void
bam_streamer::
report_state(std::ostream& os) const
{
const bam_record* bamp(get_record_ptr());
os << "\tbam_stream_label: " << name() << "\n";
if (_is_region && (! _region.empty()))
{
os << "\tbam_stream_selected_region: " << _region << "\n";
}
if (nullptr != bamp)
{
os << "\tbam_stream_record_no: " << record_no() << "\n";
os << "\tbam_record QNAME/read_number: " << bamp->qname() << "/" << bamp->read_no() << "\n";
const char* chrom_name(target_id_to_name(bamp->target_id()));
os << "\tbam record RNAME: " << chrom_name << "\n";
os << "\tbam record POS: " << bamp->pos() << "\n";
}
else
{
os << "\tno bam record currently set\n";
}
}
void
tabix_streamer::
report_state(std::ostream& os) const {
const char* line(getline());
os << "\tvcf_stream_label: " << name() << "\n";
if (NULL != line) {
os << "\tvcf_stream_record_no: " << record_no() << "\n"
<< "\tvcf_record: '" << line << "'\n";
} else {
os << "\tno vcf record currently set\n";
}
}