/*
* Ctor.
*/
ListOfGlobalStyles::ListOfGlobalStyles(RenderPkgNamespaces* renderns)
: ListOf(renderns)
{
//
// set the element namespace of this object
//
setElementNamespace(renderns->getURI());
}
/*
* Ctor.
*/
ListOfLineSegments::ListOfLineSegments(LayoutPkgNamespaces* layoutns)
: ListOf(layoutns)
{
//
// set the element namespace of this object
//
setElementNamespace(layoutns->getURI());
}
/*
* Ctor.
*/
ListOfSpeciesReferenceGlyphs::ListOfSpeciesReferenceGlyphs(LayoutPkgNamespaces* layoutns)
: ListOf(layoutns)
{
//
// set the element namespace of this object
//
setElementNamespace(layoutns->getURI());
}
/*
* Ctor.
*/
ListOfGlobalRenderInformation::ListOfGlobalRenderInformation(RenderPkgNamespaces* renderns)
: ListOf(renderns)
, mVersionMajor(1)
, mVersionMinor(0)
{
//
// set the element namespace of this object
//
setElementNamespace(renderns->getURI());
}
/*
* Creates a new Transformation2D object with the given SBMLNamespaces.
*
* @param sbmlns The SBML namespace for the object.
*/
Transformation2D::Transformation2D (RenderPkgNamespaces* renderns):
Transformation(renderns)
{
this->updateMatrix2D();
// set the element namespace of this object
setElementNamespace(renderns->getURI());
// connect child elements to this element.
connectToChild();
// load package extensions bound with this object (if any)
loadPlugins(renderns);
}
/*
* Creates a new RenderCubicBezier object with the given SBMLNamespaces.
*
* @param sbmlns The SBML namespace for the object.
*/
RenderCubicBezier::RenderCubicBezier (RenderPkgNamespaces* renderns):
RenderPoint(renderns)
{
if (!hasValidLevelVersionNamespaceCombination())
throw SBMLConstructorException();
// set the element namespace of this object
setElementNamespace(renderns->getURI());
// connect child elements to this element.
connectToChild();
// load package extensions bound with this object (if any)
loadPlugins(renderns);
}
/*
* Creates a new Style object with the given SBMLNamespaces.
*
* @param sbmlns The SBML namespace for the object.
*/
Style::Style (RenderPkgNamespaces* renderns):
SBase(renderns)
,mId("")
,mGroup(renderns)
{
// set the element namespace of this object
setElementNamespace(renderns->getURI());
// connect child elements to this element.
connectToChild();
// load package extensions bound with this object (if any)
loadPlugins(renderns);
}
/*
* Creates a new GlobalRenderInformation object with the given SBMLNamespaces.
*
* @param sbmlns The SBML namespace for the object.
*/
GlobalRenderInformation::GlobalRenderInformation (RenderPkgNamespaces* renderns):
RenderInformationBase(renderns), mListOfStyles(renderns)
{
if (!hasValidLevelVersionNamespaceCombination())
throw SBMLConstructorException();
// set the element namespace of this object
setElementNamespace(renderns->getURI());
// connect child elements to this element.
connectToChild();
// load package extensions bound with this object (if any)
loadPlugins(renderns);
}
/*
* Constructor which creates a GlobalStyle with the given @p id
* and all lists empty.
*
* @param id the new id for the GlobalStyle.
*
* This constructor is deprecated. The new libsbml API only has
* constructors which take the SBML level and version or one that takes
* an SBMLNamespaces object.
*/
GlobalStyle::GlobalStyle(RenderPkgNamespaces* renderns, const std::string& id):Style(renderns,id)
{
#ifdef DEPRECATION_WARNINGS
std::cerr << "Warning. GlobalStyle::GlobalStyle(const std::string& id) is deprecated." << std::endl;
#endif // DEPRECATION_WARNINGS
// set the element namespace of this object
setElementNamespace(renderns->getURI());
// connect child elements to this element.
connectToChild();
// load package extensions bound with this object (if any)
loadPlugins(renderns);
}
/*
* Constructor with id and values for the matrix.
*/
Transformation2D::Transformation2D(RenderPkgNamespaces* renderns, const double matrix[6]):Transformation(renderns)
{
#ifdef DEPRECATION_WARNINGS
std::cerr << "Warning. Transformation2D::Transformation2D(const double matrix[6]) is deprecated." << std::endl;
#endif // DEPRECATION_WARNINGS
this->setMatrix2D(matrix);
// set the element namespace of this object
setElementNamespace(renderns->getURI());
// connect child elements to this element.
connectToChild();
// load package extensions bound with this object (if any)
loadPlugins(renderns);
}
/*
* Creates a new point with the given ccordinates.
*
* @param x x coordinate of the RenderPoint object
* @param y y coordinate of the RenderPoint object
* @param z z coordinate of the RenderPoint object
* If the z value is omitted, it is set to 0.
*/
RenderPoint::RenderPoint(RenderPkgNamespaces* renderns, const RelAbsVector& x, const RelAbsVector& y, const RelAbsVector& z) :
SBase (renderns)
, mXOffset(x)
, mYOffset(y)
, mZOffset(z)
, mElementName("element")
{
// set the element namespace of this object
setElementNamespace(renderns->getURI());
// connect child elements to this element.
connectToChild();
// load package extensions bound with this object (if any)
loadPlugins(renderns);
}
/*
* Creates a curve with the given LayoutPkgNamespaces and an empty list of segments.
*/
Curve::Curve (LayoutPkgNamespaces *layoutns)
: SBase (layoutns)
,mCurveSegments(layoutns)
{
//
// set the element namespace of this object
//
setElementNamespace(layoutns->getURI());
connectToChild();
//
// load package extensions bound with this object (if any)
//
loadPlugins(layoutns);
}
/*
* Creates a new RenderCurve object with the given SBMLNamespaces.
*
* @param sbmlns The SBML namespace for the object.
*/
RenderCurve::RenderCurve (RenderPkgNamespaces* renderns):
GraphicalPrimitive1D(renderns)
,mStartHead("")
,mEndHead("")
,mListOfElements(renderns)
{
if (!hasValidLevelVersionNamespaceCombination())
throw SBMLConstructorException();
// set the element namespace of this object
setElementNamespace(renderns->getURI());
// connect child elements to this element.
connectToChild();
// load package extensions bound with this object (if any)
loadPlugins(renderns);
}
/*
* Creates a CubicBezier with the given points.
*
* @param bp1_x x coordinatee of the first base point.
* @param bp1_y y coordinatee of the first base point.
* @param bp1_z z coordinatee of the first base point.
* @param bp1_x x coordinatee of the second base point.
* @param bp1_y y coordinatee of the second base point.
* @param bp1_z z coordinatee of the second base point.
* @param bp1_x x coordinatee of the end point.
* @param bp1_y y coordinatee of the end point.
* @param bp1_z z coordinatee of the end point.
*/
RenderCubicBezier::RenderCubicBezier (RenderPkgNamespaces* renderns, const RelAbsVector& bp1_x,const RelAbsVector& bp1_y,const RelAbsVector& bp1_z,const RelAbsVector& bp2_x,const RelAbsVector& bp2_y,const RelAbsVector& bp2_z,const RelAbsVector& end_x,const RelAbsVector& end_y,const RelAbsVector& end_z):RenderPoint(renderns, end_x,end_y,end_z),
mBasePoint1_X(bp1_x),
mBasePoint1_Y(bp1_y),
mBasePoint1_Z(bp1_z),
mBasePoint2_X(bp2_x),
mBasePoint2_Y(bp2_y),
mBasePoint2_Z(bp2_z)
{
// set the element namespace of this object
setElementNamespace(renderns->getURI());
// connect child elements to this element.
connectToChild();
// load package extensions bound with this object (if any)
loadPlugins(renderns);
}
/*
* Instantiates an empty curve object with the given @p id.
* The decorations are unset and there are no curve elements.
*
* This constructor is deprecated. The new libsbml API only has
* constructors which take the SBML level and version or one that takes
* an SBMLNamespaces object.
*/
RenderCurve::RenderCurve(RenderPkgNamespaces* renderns, const std::string& id)
: GraphicalPrimitive1D(renderns, id)
, mStartHead("")
, mEndHead("")
, mListOfElements(renderns)
{
#ifdef DEPRECATION_WARNINGS
std::cerr << "Warning. RenderCurve::RenderCurve(const std::string& id) is deprecated." << std::endl;
#endif // DEPRECATION_WARNINGS
// set the element namespace of this object
setElementNamespace(renderns->getURI());
// connect child elements to this element.
connectToChild();
// load package extensions bound with this object (if any)
loadPlugins(renderns);
}
/*
* Creates a new RenderPoint object with the given SBMLNamespaces.
*
* @param sbmlns The SBML namespace for the object.
*/
RenderPoint::RenderPoint (RenderPkgNamespaces* renderns):
SBase(renderns)
,mXOffset(RelAbsVector(0.0,0.0))
,mYOffset(RelAbsVector(0.0,0.0))
,mZOffset(RelAbsVector(0.0,0.0))
,mElementName("element")
{
if (!hasValidLevelVersionNamespaceCombination())
throw SBMLConstructorException();
// set the element namespace of this object
setElementNamespace(renderns->getURI());
// connect child elements to this element.
connectToChild();
// load package extensions bound with this object (if any)
loadPlugins(renderns);
}
/*
* Constructor set position and dimensions to (0.0,0.0,0.0) and the id to a
* copy of the given string.
*/
BoundingBox::BoundingBox (LayoutPkgNamespaces* layoutns, const std::string id)
:
SBase(layoutns)
,mId (id)
,mPosition(layoutns)
,mDimensions(layoutns)
,mPositionExplicitlySet (false)
,mDimensionsExplicitlySet (false)
{
//
// set the element namespace of this object
//
setElementNamespace(layoutns->getURI());
mPosition.setElementName("position");
connectToChild();
loadPlugins(layoutns);
}
/*
* Creates a new ColorDefinition object with the given SBMLNamespaces.
*
* @param sbmlns The SBML namespace for the object.
*/
ColorDefinition::ColorDefinition (RenderPkgNamespaces* renderns) :
SBase(renderns)
,mId("")
,mRed(0)
,mGreen(0)
,mBlue(0)
,mAlpha(255)
{
if (!hasValidLevelVersionNamespaceCombination())
throw SBMLConstructorException();
// set the element namespace of this object
setElementNamespace(renderns->getURI());
// connect child elements to this element.
connectToChild();
// load package extensions bound with this object (if any)
loadPlugins(renderns);
}
/**
* Creates a new line segment with the given LayoutPkgNamespaces
*/
LineSegment::LineSegment (LayoutPkgNamespaces* layoutns)
: SBase (layoutns)
, mStartPoint(layoutns)
, mEndPoint (layoutns)
{
//
// set the element namespace of this object
//
setElementNamespace(layoutns->getURI());
this->mStartPoint.setElementName("start");
this->mEndPoint.setElementName("end");
connectToChild();
//
// load package extensions bound with this object (if any)
//
loadPlugins(layoutns);
}
BoundingBox::BoundingBox(LayoutPkgNamespaces* layoutns)
: SBase(layoutns)
,mPosition(layoutns)
,mDimensions(layoutns)
,mPositionExplicitlySet (false)
,mDimensionsExplicitlySet (false)
{
//
// set the element namespace of this object
//
setElementNamespace(layoutns->getURI());
mPosition.setElementName("position");
connectToChild();
//
// load package extensions bound with this object (if any)
//
loadPlugins(layoutns);
}
/*
* Constructor which sets the ColorDefinition to the given RGBA values.
*
* @param r Red component value. Has to be in the range of 0 to 255.
* @param g Green component value. Has to be in the range of 0 to 255.
* @param b Blue component value. Has to be in the range of 0 to 255.
* @param a Alpha component value. Has to be in the range of 0 to 255.
* The alpha component can be omitted. In that case it has a default value of 255.
*
* This constructor is deprecated. The new libsbml API only has
* constructors which take the SBML level and version or one that takes
* an SBMLNamespaces object.
*/
ColorDefinition::ColorDefinition(RenderPkgNamespaces* renderns, unsigned char r,unsigned char g,unsigned char b,unsigned char a)
:SBase(renderns)
,mId()
,mRed(r)
,mGreen(g)
,mBlue(b)
,mAlpha(a)
{
// set the element namespace of this object
setElementNamespace(renderns->getURI());
// connect child elements to this element.
connectToChild();
// load package extensions bound with this object (if any)
loadPlugins(renderns);
#ifdef DEPRECATION_WARNINGS
std::cerr << "Warning. ColorDefinition::ColorDefinition(unsigned char r,unsigned char g,unsigned char b,unsigned char a) is deprecated." << std::endl;
#endif // DEPRECATION_WARNINGS
}
/*
* Constructor which sets the id, the coordinates and the dimensions to the
* given 2D values.
*/
BoundingBox::BoundingBox (LayoutPkgNamespaces* layoutns, const std::string id,
double x, double y, double width, double height)
: SBase (layoutns)
, mId (id)
, mPosition (layoutns, x, y, 0.0)
, mDimensions(layoutns, width, height, 0.0)
,mPositionExplicitlySet (true)
,mDimensionsExplicitlySet (true)
{
//
// set the element namespace of this object
//
setElementNamespace(layoutns->getURI());
mPosition.setElementName("position");
connectToChild();
//
// load package extensions bound with this object (if any)
//
loadPlugins(layoutns);
}
/*
* Creates a new Text object with the given SBMLNamespaces.
*
* @param sbmlns The SBML namespace for the object.
*/
Text::Text (RenderPkgNamespaces* renderns)
: GraphicalPrimitive1D(renderns)
, mX(RelAbsVector(0.0,0.0))
, mY(RelAbsVector(0.0,0.0))
, mZ(RelAbsVector(0.0,0.0))
, mFontFamily("")
, mFontSize(RelAbsVector(std::numeric_limits<double>::quiet_NaN(),std::numeric_limits<double>::quiet_NaN()))
, mFontWeight(Text::WEIGHT_UNSET)
, mFontStyle(Text::STYLE_UNSET)
, mTextAnchor(Text::ANCHOR_UNSET)
, mVTextAnchor(Text::ANCHOR_UNSET)
, mText("")
{
if (!hasValidLevelVersionNamespaceCombination())
throw SBMLConstructorException();
// set the element namespace of this object
setElementNamespace(renderns->getURI());
// connect child elements to this element.
connectToChild();
// load package extensions bound with this object (if any)
loadPlugins(renderns);
}
/*
* Ctor.
*/
ListOfColorDefinitions::ListOfColorDefinitions(RenderPkgNamespaces* renderns)
: ListOf(renderns)
{
setElementNamespace(renderns->getURI());
}
