void initial_params::save() { adstring extension; if (current_phase == max_number_phases) { extension = "ar"; } else if (current_phase >= 10) { extension = str(current_phase); } else { extension = "0" + str(current_phase); } { adstring tadstring=ad_comm::adprogram_name + adstring(".p") + extension; ofstream parfile((char*)tadstring); if (parfile.good()) { parfile << setshowpoint() << "# Number of parameters = " << initial_params::nvarcalc() << " Objective function value = " << *objective_function_value::pobjfun << " Maximum gradient component = " << objective_function_value::gmax << endl; for (int i = 0; i < num_initial_params; ++i) { varsptr[i]->save_value(parfile); } } } { adstring tadstring = ad_comm::adprogram_name + adstring(".b") + extension; uostream barfile((char*)tadstring); if (barfile.good()) { for (int i = 0; i < num_initial_params; ++i) { (varsptr[i])->bsave_value(barfile); } } } }
/** * Description not yet available. * \param */ void function_minimizer::constraint_report() { adstring tmp; if (initial_params::current_phase==initial_params::max_number_phases) { tmp="on"; } else if (initial_params::current_phase>=10) { tmp=str(initial_params::current_phase); } else { tmp="0" + str(initial_params::current_phase); } { adstring tadstring=ad_comm::adprogram_name + adstring(".c") + tmp; ofstream ofs((char*)tadstring); ofs << setshowpoint(); ofs << "# Objective function value = " << endl << " " << *objective_function_value::pobjfun << endl; if (function_minimizer::ph) { ofs << "# Equality constraint values: "<< endl; named_dvar_vector & w = *function_minimizer::ph; for (int i=w.indexmin();i<=w.indexmax();i++) { adstring ads= adstring(w.label().mychar()) + "(" + str(i) + ") "; if (i<10) ofs << " "; else if (i<100) ofs << " "; else ofs << " "; ofs << ads << w(i)<< endl; } } if (function_minimizer::pg) { ofs << "# Inequality constraint values: "<< endl; named_dvar_vector & w = *function_minimizer::pg; for (int i=w.indexmin();i<=w.indexmax();i++) { if (i<10) ofs << " "; else if (i<100) ofs << " "; else ofs << " "; adstring ads= adstring(w.label().mychar()) + "(" + str(i) + ") "; ofs << ads << w(i)<< endl; } } ofs << "#exit condition: "; switch(function_minimizer::constraint_exit_number) { case 1: ofs << "Error calculatinumberv constraint" <<endl; break; case 2: ofs << "Error calculatinumberv objective function" <<endl; break; case 7: ofs << "Current search direction is not feasible" << endl; break; case 11: ofs << "Kuhn-Tucker conditions satisfied" << endl; break; case 15: ofs << "Function munimxizer not makinumberv enough progress -- " "Is answer attained?" << endl; break; default: ofs << "Unknown error" <<endl; break; } } }
/** * Description not yet available. * \param */ void laplace_approximation_calculator:: do_newton_raphson_banded(function_minimizer * pfmin,double f_from_1, int& no_converge_flag) { //quadratic_prior * tmpptr=quadratic_prior::ptr[0]; //cout << tmpptr << endl; laplace_approximation_calculator::where_are_we_flag=2; double maxg=fabs(evaluate_function(uhat,pfmin)); laplace_approximation_calculator::where_are_we_flag=0; dvector uhat_old(1,usize); for(int ii=1;ii<=num_nr_iters;ii++) { // test newton raphson switch(hesstype) { case 3: bHess->initialize(); break; case 4: Hess.initialize(); break; default: cerr << "Illegal value for hesstype here" << endl; ad_exit(1); } grad.initialize(); //int check=initial_params::stddev_scale(scale,uhat); //check=initial_params::stddev_curvscale(curv,uhat); //max_separable_g=0.0; sparse_count = 0; step=get_newton_raphson_info_banded(pfmin); //if (bHess) // cout << "norm(*bHess) = " << norm(*bHess) << endl; //cout << "norm(Hess) = " << norm(Hess) << endl; //cout << grad << endl; //check_pool_depths(); if (!initial_params::mc_phase) cout << "Newton raphson " << ii << " "; if (quadratic_prior::get_num_quadratic_prior()>0) { quadratic_prior::get_cHessian_contribution(Hess,xsize); quadratic_prior::get_cgradient_contribution(grad,xsize); } int ierr=0; if (hesstype==3) { if (use_dd_nr==0) { banded_lower_triangular_dmatrix bltd=choleski_decomp(*bHess,ierr); if (ierr && no_converge_flag ==0) { no_converge_flag=1; //break; } if (ierr) { double oldval; evaluate_function(oldval,uhat,pfmin); uhat=banded_calculations_trust_region_approach(uhat,pfmin); } else { if (dd_nr_flag==0) { dvector v=solve(bltd,grad); step=-solve_trans(bltd,v); //uhat_old=uhat; uhat+=step; } else { #if defined(USE_DD_STUFF) int n=grad.indexmax(); maxg=fabs(evaluate_function(uhat,pfmin)); uhat=dd_newton_raphson2(grad,*bHess,uhat); #else cerr << "high precision Newton Raphson not implemented" << endl; ad_exit(1); #endif } maxg=fabs(evaluate_function(uhat,pfmin)); if (f_from_1< pfmin->lapprox->fmc1.fbest) { uhat=banded_calculations_trust_region_approach(uhat,pfmin); maxg=fabs(evaluate_function(uhat,pfmin)); } } } else { cout << "error not used" << endl; ad_exit(1); /* banded_symmetric_ddmatrix bHessdd=banded_symmetric_ddmatrix(*bHess); ddvector gradd=ddvector(grad); //banded_lower_triangular_ddmatrix bltdd=choleski_decomp(bHessdd,ierr); if (ierr && no_converge_flag ==0) { no_converge_flag=1; break; } if (ierr) { double oldval; evaluate_function(oldval,uhat,pfmin); uhat=banded_calculations_trust_region_approach(uhat,pfmin); maxg=fabs(evaluate_function(uhat,pfmin)); } else { ddvector v=solve(bHessdd,gradd); step=-make_dvector(v); //uhat_old=uhat; uhat=make_dvector(ddvector(uhat)+step); maxg=fabs(evaluate_function(uhat,pfmin)); if (f_from_1< pfmin->lapprox->fmc1.fbest) { uhat=banded_calculations_trust_region_approach(uhat,pfmin); maxg=fabs(evaluate_function(uhat,pfmin)); } } */ } if (maxg < 1.e-13) { break; } } else if (hesstype==4) { dvector step; # if defined(USE_ATLAS) if (!ad_comm::no_atlas_flag) { step=-atlas_solve_spd(Hess,grad,ierr); } else { dmatrix A=choleski_decomp_positive(Hess,ierr); if (!ierr) { step=-solve(Hess,grad); //step=-solve(A*trans(A),grad); } } if (!ierr) break; # else if (sparse_hessian_flag) { //step=-solve(*sparse_triplet,Hess,grad,*sparse_symbolic); dvector temp=solve(*sparse_triplet2,grad,*sparse_symbolic2,ierr); if (ierr) { step=-temp; } else { cerr << "matrix not pos definite in sparse choleski" << endl; pfmin->bad_step_flag=1; int on; int nopt; if ((on=option_match(ad_comm::argc,ad_comm::argv,"-ieigvec",nopt)) >-1) { dmatrix M=make_dmatrix(*sparse_triplet2); ofstream ofs3("inner-eigvectors"); ofs3 << "eigenvalues and eigenvectors " << endl; dvector v=eigenvalues(M); dmatrix ev=trans(eigenvectors(M)); ofs3 << "eigenvectors" << endl; int i; for (i=1;i<=ev.indexmax();i++) { ofs3 << setw(4) << i << " " << setshowpoint() << setw(14) << setprecision(10) << v(i) << " " << setshowpoint() << setw(14) << setprecision(10) << ev(i) << endl; } } } //cout << norm2(step-tmpstep) << endl; //dvector step1=-solve(Hess,grad); //cout << norm2(step-step1) << endl; } else { step=-solve(Hess,grad); } # endif if (pmin->bad_step_flag) break; uhat_old=uhat; uhat+=step; double maxg_old=maxg; maxg=fabs(evaluate_function(uhat,pfmin)); if (maxg>maxg_old) { uhat=uhat_old; evaluate_function(uhat,pfmin); break; } if (maxg < 1.e-13) { break; } } if (sparse_hessian_flag==0) { for (int i=1;i<=usize;i++) { y(i+xsize)=uhat(i); } } else { for (int i=1;i<=usize;i++) { value(y(i+xsize))=uhat(i); } } } }
/** Symmetrize and invert the hessian */ void function_minimizer::hess_inv(void) { initial_params::set_inactive_only_random_effects(); int nvar=initial_params::nvarcalc(); // get the number of active parameters independent_variables x(1,nvar); initial_params::xinit(x); // get the initial values into the x vector //double f; dmatrix hess(1,nvar,1,nvar); uistream ifs("admodel.hes"); int file_nvar = 0; ifs >> file_nvar; if (nvar != file_nvar) { cerr << "Number of active variables in file mod_hess.rpt is wrong" << endl; } for (int i = 1;i <= nvar; i++) { ifs >> hess(i); if (!ifs) { cerr << "Error reading line " << i << " of the hessian" << " in routine hess_inv()" << endl; exit(1); } } int hybflag = 0; ifs >> hybflag; dvector sscale(1,nvar); ifs >> sscale; if (!ifs) { cerr << "Error reading sscale" << " in routine hess_inv()" << endl; } double maxerr=0.0; for (int i = 1;i <= nvar; i++) { for (int j=1;j<i;j++) { double tmp=(hess(i,j)+hess(j,i))/2.; double tmp1=fabs(hess(i,j)-hess(j,i)); tmp1/=(1.e-4+fabs(hess(i,j))+fabs(hess(j,i))); if (tmp1>maxerr) maxerr=tmp1; hess(i,j)=tmp; hess(j,i)=tmp; } } /* if (maxerr>1.e-2) { cerr << "warning -- hessian aprroximation is poor" << endl; } */ for (int i = 1;i <= nvar; i++) { int zero_switch=0; for (int j=1;j<=nvar;j++) { if (hess(i,j)!=0.0) { zero_switch=1; } } if (!zero_switch) { cerr << " Hessian is 0 in row " << i << endl; cerr << " This means that the derivative if probably identically 0 " " for this parameter" << endl; } } int ssggnn; ln_det(hess,ssggnn); int on1=0; { ofstream ofs3((char*)(ad_comm::adprogram_name + adstring(".eva"))); { dvector se=eigenvalues(hess); ofs3 << setshowpoint() << setw(14) << setprecision(10) << "unsorted:\t" << se << endl; se=sort(se); ofs3 << setshowpoint() << setw(14) << setprecision(10) << "sorted:\t" << se << endl; if (se(se.indexmin())<=0.0) { negative_eigenvalue_flag=1; cout << "Warning -- Hessian does not appear to be" " positive definite" << endl; } } ivector negflags(0,hess.indexmax()); int num_negflags=0; { int on = option_match(ad_comm::argc,ad_comm::argv,"-eigvec"); on1=option_match(ad_comm::argc,ad_comm::argv,"-spmin"); if (on > -1 || on1 >-1 ) { ofs3 << setshowpoint() << setw(14) << setprecision(10) << eigenvalues(hess) << endl; dmatrix ev=trans(eigenvectors(hess)); ofs3 << setshowpoint() << setw(14) << setprecision(10) << ev << endl; for (int i=1;i<=ev.indexmax();i++) { double lam=ev(i)*hess*ev(i); ofs3 << setshowpoint() << setw(14) << setprecision(10) << lam << " " << ev(i)*ev(i) << endl; if (lam<0.0) { num_negflags++; negflags(num_negflags)=i; } } if ( (on1>-1) && (num_negflags>0)) // we will try to get away from { // saddle point negative_eigenvalue_flag=0; spminflag=1; if(negdirections) { delete negdirections; } negdirections = new dmatrix(1,num_negflags); for (int i=1;i<=num_negflags;i++) { (*negdirections)(i)=ev(negflags(i)); } } int on2 = option_match(ad_comm::argc,ad_comm::argv,"-cross"); if (on2>-1) { // saddle point dmatrix cross(1,ev.indexmax(),1,ev.indexmax()); for (int i = 1;i <= ev.indexmax(); i++) { for (int j=1;j<=ev.indexmax();j++) { cross(i,j)=ev(i)*ev(j); } } ofs3 << endl << " e(i)*e(j) "; ofs3 << endl << cross << endl; } } } if (spminflag==0) { if (num_negflags==0) { hess=inv(hess); int on=0; if ( (on=option_match(ad_comm::argc,ad_comm::argv,"-eigvec"))>-1) { int i; ofs3 << "choleski decomp of correlation" << endl; dmatrix ch=choleski_decomp(hess); for (i=1;i<=ch.indexmax();i++) ofs3 << ch(i)/norm(ch(i)) << endl; ofs3 << "parameterization of choleski decomnp of correlation" << endl; for (i=1;i<=ch.indexmax();i++) { dvector tmp=ch(i)/norm(ch(i)); ofs3 << tmp(1,i)/tmp(i) << endl; } } } } } if (spminflag==0) { if (on1<0) { for (int i = 1;i <= nvar; i++) { if (hess(i,i) <= 0.0) { hess_errorreport(); ad_exit(1); } } } { adstring tmpstring="admodel.cov"; if (ad_comm::wd_flag) tmpstring = ad_comm::adprogram_name + ".cov"; uostream ofs((char*)tmpstring); ofs << nvar << hess; ofs << gradient_structure::Hybrid_bounded_flag; ofs << sscale; } } }