void test_stList_removeFirst(CuTest *testCase) {
setup();
int64_t i;
for(i=0; i<stringNumber; i++) {
CuAssertTrue(testCase, stList_removeFirst(list) == strings[i]);
CuAssertTrue(testCase, stList_length(list) == stringNumber-1-i);
}
teardown();
}
int main(int argc, char *argv[])
{
char *cactusDiskString = NULL;
stKVDatabaseConf *kvDatabaseConf;
CactusDisk *cactusDisk;
Flower *flower;
Flower_SequenceIterator *flowerIt;
Sequence *sequence;
struct option longopts[] = { {"cactusDisk", required_argument, NULL, 'c' },
{0, 0, 0, 0} };
int flag;
while((flag = getopt_long(argc, argv, "", longopts, NULL)) != -1) {
switch(flag) {
case 'c':
cactusDiskString = stString_copy(optarg);
break;
case '?':
default:
usage();
return 1;
}
}
if (cactusDiskString == NULL) {
st_errAbort("--cactusDisk option must be provided");
}
kvDatabaseConf = stKVDatabaseConf_constructFromString(cactusDiskString);
cactusDisk = cactusDisk_construct(kvDatabaseConf, 0);
// Get top-level flower.
flower = cactusDisk_getFlower(cactusDisk, 0);
flowerIt = flower_getSequenceIterator(flower);
while((sequence = flower_getNextSequence(flowerIt)) != NULL) {
MetaSequence *metaSequence = sequence_getMetaSequence(sequence);
const char *header;
char *firstToken, *newHeader;
stList *tokens;
// Strip the ID token from the header (should be the first
// |-separated token) and complain if there isn't one.
header = metaSequence_getHeader(metaSequence);
tokens = fastaDecodeHeader(header);
assert(stList_length(tokens) > 1);
firstToken = stList_removeFirst(tokens);
assert(!strncmp(firstToken, "id=", 3));
free(firstToken);
newHeader = fastaEncodeHeader(tokens);
metaSequence_setHeader(metaSequence, newHeader);
}
cactusDisk_write(cactusDisk);
}
