/* clone a node */
stTree *stTree_cloneNode(stTree *node) {
stTree *node2 = stTree_construct();
stTree_setBranchLength(node2, stTree_getBranchLength(node));
stTree_setClientData(node2, stTree_getClientData(node));
stTree_setLabel(node2, stTree_getLabel(node));
return node2;
}
void makeEventHeadersAlphaNumericFn(stTree *tree) {
char *cA = makeAlphaNumeric(stTree_getLabel(tree));
stTree_setLabel(tree, cA);
free(cA);
for (int64_t i = 0; i < stTree_getChildNumber(tree); i++) {
makeEventHeadersAlphaNumericFn(stTree_getChild(tree, i));
}
}
static stTree *eventTree_getStTree_R(Event *event) {
stTree *ret = stTree_construct();
stTree_setLabel(ret, stString_print("%" PRIi64, event_getName(event)));
stTree_setBranchLength(ret, event_getBranchLength(event));
for(int64_t i = 0; i < event_getChildNumber(event); i++) {
Event *child = event_getChild(event, i);
stTree *childStTree = eventTree_getStTree_R(child);
stTree_setParent(childStTree, ret);
}
return ret;
}
/* construct an ETree node from a malnComp */
static stTree *malnCompToETreeNode(struct malnComp *comp) {
stTree *eTree = stTree_construct();
stTree_setLabel(eTree, comp->seq->orgSeqName);
return eTree;
}
/*
* Sets the label, if the token is a label and updates the token.
*/
static void tree_parseNewickString_getLabel(char **token, char **newickTreeString, stTree *tree) {
if(**token != ':' && **token != ',' && **token != ';' && **token != ')') {
stTree_setLabel(tree, *token);
tree_parseNewickTreeString_getNextToken(token, newickTreeString);
}
}
