/* Takes node->command and wraps it in wrapper_command. Then, if in monitor
* * mode, wraps the wrapped command in the monitor command. */
void makeflow_wrap_wrapper( struct batch_task *task, struct dag_node *n, struct makeflow_wrapper *w )
{
if(!w) return ;
char *nodeid = string_format("%d",n->nodeid);
char *wrap_tmp = string_replace_percents(w->command, nodeid);
free(nodeid);
batch_task_wrap_command(task, wrap_tmp);
free(wrap_tmp);
}
/* Takes node->command and wraps it in wrapper_command. Then, if in monitor
* * mode, wraps the wrapped command in the monitor command. */
char *makeflow_wrap_wrapper( char *command, struct dag_node *n, struct makeflow_wrapper *w )
{
if(!w) return xxstrdup(command);
char *nodeid = string_format("%d",n->nodeid);
char *wrap_tmp = string_replace_percents(w->command, nodeid);
free(nodeid);
char *result = string_wrap_command(command, wrap_tmp);
free(wrap_tmp);
return result;
}
/** Wraps the specified command using string_wrap_command.
See stringtools for a more detailed example of its use.
Frees the previously set command after wrapping.
*/
void batch_task_wrap_command(struct batch_task *t, const char *command)
{
if(!command) return;
char *id = string_format("%d",t->taskid);
char *wrap_tmp = string_replace_percents(command, id);
free(id);
char *result = string_wrap_command(t->command, wrap_tmp);
free(wrap_tmp);
free(t->command);
t->command = result;
}
struct list *makeflow_wrapper_generate_files( struct list *result, struct list *input, struct dag_node *n, struct makeflow_wrapper *w)
{
char *f;
char *nodeid = string_format("%d",n->nodeid);
struct list *files = list_create();
list_first_item(input);
while((f = list_next_item(input)))
{
char *filename = string_replace_percents(f, nodeid);
char *f = xxstrdup(filename);
free(filename);
char *remote, *p;
struct dag_file *file;
p = strchr(f, '=');
if(p) {
*p = 0;
file = dag_file_lookup_or_create(n->d, f);
if(!n->local_job && !itable_lookup(w->remote_names, (uintptr_t) file)){
remote = xxstrdup(p+1);
itable_insert(w->remote_names, (uintptr_t) file, (void *)remote);
hash_table_insert(w->remote_names_inv, remote, (void *)file);
}
*p = '=';
} else {
file = dag_file_lookup_or_create(n->d, f);
}
free(f);
list_push_tail(files, file);
}
free(nodeid);
result = list_splice(result, files);
return result;
}
void makeflow_wrapper_generate_files( struct batch_task *task, struct list *input, struct list *output, struct dag_node *n, struct makeflow_wrapper *w)
{
char *f;
char *nodeid = string_format("%d",n->nodeid);
list_first_item(input);
while((f = list_next_item(input)))
{
char *filename = string_replace_percents(f, nodeid);
char *f = xxstrdup(filename);
free(filename);
char *remote, *p;
struct dag_file *file;
p = strchr(f, '=');
if(p) {
*p = 0;
file = dag_file_lookup_or_create(n->d, f);
if(!n->local_job && !itable_lookup(w->remote_names, (uintptr_t) file)){
remote = xxstrdup(p+1);
itable_insert(w->remote_names, (uintptr_t) file, (void *)remote);
hash_table_insert(w->remote_names_inv, remote, (void *)file);
makeflow_hook_add_input_file(n->d, task, f, remote, file->type);
} else {
makeflow_hook_add_output_file(n->d, task, f, NULL, file->type);
}
*p = '=';
} else {
file = dag_file_lookup_or_create(n->d, f);
makeflow_hook_add_input_file(n->d, task, f, NULL, file->type);
}
free(f);
}
list_first_item(output);
while((f = list_next_item(output)))
{
char *filename = string_replace_percents(f, nodeid);
char *f = xxstrdup(filename);
free(filename);
char *remote, *p;
struct dag_file *file;
p = strchr(f, '=');
if(p) {
*p = 0;
file = dag_file_lookup_or_create(n->d, f);
if(!n->local_job && !itable_lookup(w->remote_names, (uintptr_t) file)){
remote = xxstrdup(p+1);
itable_insert(w->remote_names, (uintptr_t) file, (void *)remote);
hash_table_insert(w->remote_names_inv, remote, (void *)file);
makeflow_hook_add_output_file(n->d, task, f, remote, file->type);
} else {
makeflow_hook_add_output_file(n->d, task, f, NULL, file->type);
}
*p = '=';
} else {
file = dag_file_lookup_or_create(n->d, f);
makeflow_hook_add_output_file(n->d, task, f, NULL, file->type);
}
free(f);
}
free(nodeid);
}
