avtDataObject_p
avtEvalTransformExpression::TransformData(avtDataObject_p input)
{
vtkMatrix4x4 *mat = vtkMatrix4x4::New();
mat->SetElement(0, 0, inputParameters[0]);
mat->SetElement(0, 1, inputParameters[1]);
mat->SetElement(0, 2, inputParameters[2]);
mat->SetElement(1, 0, inputParameters[3]);
mat->SetElement(1, 1, inputParameters[4]);
mat->SetElement(1, 2, inputParameters[5]);
mat->SetElement(2, 0, inputParameters[6]);
mat->SetElement(2, 1, inputParameters[7]);
mat->SetElement(2, 2, inputParameters[8]);
avtDataset_p ds;
CopyTo(ds, input);
avtSourceFromAVTDataset termsrc(ds);
avtCustomTransform transform;
transform.SetMatrix(mat);
transform.SetInput(termsrc.GetOutput());
avtDataObject_p output = transform.GetOutput();
output->Update(GetGeneralContract());
mat->Delete();
return output;
}
// ****************************************************************************
// Method: avtConnComponentsWeightedVariableQuery::ApplyFilters
//
// Purpose:
// Applies the filters to the input.
//
// Programmer: Cyrus Harrison
// Creation: February 2, 2007
//
// Modifications:
// Cyrus Harrison, Mon Jun 6 17:04:12 PDT 2011
// Support lines.
//
// ****************************************************************************
avtDataObject_p
avtConnComponentsWeightedVariableQuery::ApplyFilters(avtDataObject_p inData)
{
//
// Create an artificial pipeline.
//
avtDataset_p ds;
CopyTo(ds, inData);
avtSourceFromAVTDataset termsrc(ds);
avtDataObject_p dob = termsrc.GetOutput();
// add either lengthFilter, areaFilter, or volumeFilter based on input dimension
int topo = GetInput()->GetInfo().GetAttributes().GetTopologicalDimension();
if (topo == 1)
{
debug5 << "ConnComponentsWeightedVariable query using length" << endl;
lengthFilter->SetInput(dob);
dob = lengthFilter->GetOutput();
}
else if (topo == 2)
{
if (GetInput()->GetInfo().GetAttributes().GetMeshCoordType()== AVT_XY)
{
debug5 << "ConnComponentsWeightedVariable query using "
<< "Area" << endl;
areaFilter->SetInput(dob);
dob = areaFilter->GetOutput();
}
else
{
debug5 << "ConnComponentsWeightedVariable query using "
<< "RevolvedVolume" << endl;
revolvedVolumeFilter->SetInput(dob);
dob = revolvedVolumeFilter->GetOutput();
}
}
else
{
debug5 << "ConnComponentsWeightedVariable query using "
<< "Volume" << endl;
volumeFilter->SetInput(dob);
dob = volumeFilter->GetOutput();
}
cclFilter->SetInput(dob);
dob = cclFilter->GetOutput();
avtContract_p contract =
inData->GetOriginatingSource()->GetGeneralContract();
cclFilter->GetOutput()->Update(contract);
return cclFilter->GetOutput();
}
void
avtLineScanQuery::Execute(avtDataTree_p tree)
{
avtDataset_p input = GetTypedInput();
int numPasses = numLines / numLinesPerIteration;
if (numLines % numLinesPerIteration != 0)
numPasses++;
avtContract_p contract =
input->GetOriginatingSource()->GetGeneralContract();
if (GetInput()->GetInfo().GetAttributes().ValidActiveVariable())
varname = GetInput()->GetInfo().GetAttributes().GetVariableName();
else
varname = contract->GetDataRequest()->GetVariable();
for (int i = 0 ; i < numPasses ; i++)
{
int numForLast = (numLines % numLinesPerIteration);
numForLast = (numForLast == 0 ? numLinesPerIteration : numForLast);
int linesForThisPass = (i == numPasses-1 ? numForLast
: numLinesPerIteration);
//
// Create an artificial pipeline.
//
avtDataset_p ds;
CopyTo(ds, input);
avtSourceFromAVTDataset termsrc(ds);
avtDataObject_p dob = termsrc.GetOutput();
avtLineScanFilter *filt = CreateLineScanFilter();
filt->SetNumberOfLines(linesForThisPass);
filt->SetRandomSeed(i);
filt->SetInput(dob);
//
// Cause our artificial pipeline to execute.
//
filt->GetOutput()->Update(contract);
lines = filt->GetLines();
avtDataset_p ds2 = filt->GetTypedOutput();
avtDataTree_p tree = ds2->GetDataTree();
ExecuteTree(tree);
lines = NULL;
delete filt;
//
// Reset the timeout for the next iteration.
//
avtCallback::ResetTimeout(60*5);
}
}
avtDataObject_p
avtActualDataMinMaxQuery::ApplyFilters(avtDataObject_p inData)
{
Preparation(inData);
bool zonesPreserved = GetInput()->GetInfo().GetValidity().GetZonesPreserved();
zonesPreserved = (bool)UnifyMinimumValue((int)zonesPreserved);
if (!timeVarying && zonesPreserved)
{
avtContract_p contract =
inData->GetOriginatingSource()->GetGeneralContract();
avtDataset_p ds;
CopyTo(ds, inData);
avtSourceFromAVTDataset termsrc(ds);
avtDataObject_p obj = termsrc.GetOutput();
condense->SetInput(obj);
avtDataObject_p retObj = condense->GetOutput();
retObj->Update(contract);
return retObj;
}
else
{
avtDataRequest_p oldSpec = inData->GetOriginatingSource()->
GetGeneralContract()->GetDataRequest();
avtDataRequest_p newDS = new
avtDataRequest(oldSpec, querySILR);
newDS->SetTimestep(queryAtts.GetTimeStep());
newDS->SetVariable(queryAtts.GetVariables()[0].c_str());
if (!zonesPreserved)
newDS->TurnZoneNumbersOn();
avtContract_p contract =
new avtContract(newDS, queryAtts.GetPipeIndex());
avtDataObject_p temp;
CopyTo(temp, inData);
condense->SetInput(temp);
avtDataObject_p retObj = condense->GetOutput();
retObj->Update(contract);
return retObj;
}
}
avtDataObject_p
avtEvalPointExpression::TransformData(avtDataObject_p input)
{
//
// Gameplan: For each point (X,Y,Z), the vector to a point (X0, Y0, Z0)
// is (X0-X, Y0-Y, Z0-Z). So we want to move 2*(X0-X, Y0-Y, Z0-Z).
// Then the final point is (2X0-X, 2Y0-Y, 2Z0-Z). So set up a transform
// that does this.
//
double X = inputParameters[0];
double Y = inputParameters[1];
double Z = inputParameters[2];
vtkMatrix4x4 *mat = vtkMatrix4x4::New();
mat->SetElement(0, 0, -1);
mat->SetElement(1, 1, -1);
mat->SetElement(2, 2, -1);
mat->SetElement(0, 3, +2.*X);
mat->SetElement(1, 3, +2.*Y);
mat->SetElement(2, 3, +2.*Z);
avtDataset_p ds;
CopyTo(ds, input);
avtSourceFromAVTDataset termsrc(ds);
avtCustomTransform transform;
transform.SetMatrix(mat);
transform.SetInput(termsrc.GetOutput());
avtDataObject_p output = transform.GetOutput();
output->Update(GetGeneralContract());
mat->Delete();
return output;
}
// ****************************************************************************
// Method: avtConnComponentsLengthQuery::ApplyFilters
//
// Purpose:
// Constructs an artificial pipeline with the connected components and
// area filters necessary to obtain per component area.
//
// Programmer: Cyrus Harrison
// Creation: Wed Jun 15 13:09:43 PDT 2011
//
// ****************************************************************************
avtDataObject_p
avtConnComponentsLengthQuery::ApplyFilters(avtDataObject_p inData)
{
// Create an artificial pipeline.
avtDataset_p ds;
CopyTo(ds, inData);
avtSourceFromAVTDataset termsrc(ds);
avtDataObject_p dob = termsrc.GetOutput();
// add the area filter to the pipeline
lengthFilter->SetInput(dob);
dob = lengthFilter->GetOutput();
// add the ccl filter to the pipeline
cclFilter->SetInput(dob);
dob = cclFilter->GetOutput();
avtContract_p contract =
inData->GetOriginatingSource()->GetGeneralContract();
cclFilter->GetOutput()->Update(contract);
return cclFilter->GetOutput();
}
void
avtGhostZoneAndFacelistFilter::Execute(void)
{
int timingIndex = visitTimer->StartTimer();
avtDataObject_p dObj = GetInput();
avtDataValidity &v = dObj->GetInfo().GetValidity();
// Make sure this is the latest info. This changes under very bizarre
// circumstances. ['3352].
avtDataAttributes &a = dObj->GetInfo().GetAttributes();
useGhostFilter = (a.GetContainsGhostZones()!=AVT_NO_GHOSTS ? true : false);
avtDataset_p ds;
CopyTo(ds, dObj);
avtSourceFromAVTDataset termsrc(ds);
avtDataObject_p data = termsrc.GetOutput();
avtContract_p contractForDB = GetGeneralContract();
avtDataRequest_p wrongVar = contractForDB->GetDataRequest();
avtDataRequest_p correctVar = new avtDataRequest(wrongVar, pipelineVariable);
// By copying the "correct var", our mechanism for telling the SIL to
// not be used is ignored. So turn it back on.
correctVar->GetSIL().useRestriction = false;
correctVar->GetSIL().dataChunk = -1;
avtContract_p goodSpec = new avtContract(contractForDB, correctVar);
if (useFaceFilter && !useGhostFilter)
{
debug5 << "Using facelist filter only." << endl;
faceFilter->SetInput(data);
faceFilter->Update(goodSpec);
GetOutput()->Copy(*(faceFilter->GetOutput()));
}
else if (useGhostFilter && !useFaceFilter)
{
debug5 << "Using ghostzone filter only." << endl;
ghostFilter->SetInput(data);
ghostFilter->Update(goodSpec);
GetOutput()->Copy(*(ghostFilter->GetOutput()));
}
else if (!useGhostFilter && !useFaceFilter)
{
debug5 << "Not applying ghost zone or facelist filter." << endl;
GetOutput()->Copy(*dObj);
}
else
{
// if we are using all the data, apply the facelist filter first.
bool faceFirst = v.GetUsingAllDomains() ||
(a.GetContainsGhostZones() == AVT_CREATED_GHOSTS);
if (faceFirst)
{
debug5 << "Using facelist filter before ghostzone filter." << endl;
if (GetInput()->GetInfo().GetAttributes().
GetContainsExteriorBoundaryGhosts())
{
debug5 << "But there are exterior boundaries, so doing a ghost"
<< " before that!" << endl;
exteriorBoundaryGhostFilter->SetInput(data);
data = exteriorBoundaryGhostFilter->GetOutput();
}
faceFilter->SetInput(data);
ghostFilter->SetInput(faceFilter->GetOutput());
ghostFilter->Update(goodSpec);
GetOutput()->Copy(*(ghostFilter->GetOutput()));
}
else
{
debug5 << "Using ghostzone filter before facelist filter." << endl;
ghostFilter->SetInput(data);
faceFilter->SetInput(ghostFilter->GetOutput());
faceFilter->Update(goodSpec);
GetOutput()->Copy(*(faceFilter->GetOutput()));
}
}
visitTimer->StopTimer(timingIndex, "GhostZone And Facelist Filter");
visitTimer->DumpTimings();
}
void
avtResampleFilter::ResampleInput(void)
{
int i, j, k;
avtDataset_p output = GetTypedOutput();
double bounds[6] = { 0, 0, 0, 0, 0, 0 };
bool is3D = GetBounds(bounds);
debug4 << "Resampling over space: " << bounds[0] << ", " << bounds[1]
<< ": " << bounds[2] << ", " << bounds[3] << ": " << bounds[4]
<< ", " << bounds[5] << endl;
//
// Our resampling leaves some invalid values in the data range. The
// easiest way to bypass this is to get the data range from the input and
// pass it along (since resampling does not change it in theory).
//
double range[2];
if (GetInput()->GetInfo().GetAttributes().ValidActiveVariable())
{
GetDataExtents(range);
output->GetInfo().GetAttributes().GetDesiredDataExtents()->Set(range);
}
avtViewInfo view;
double scale[3];
CreateViewFromBounds(view, bounds, scale);
//
// What we want the width, height, and depth to be depends on the
// attributes.
//
int width, height, depth;
GetDimensions(width, height, depth, bounds, is3D);
//
// If there are no variables, then just create the mesh and exit.
//
bool thereAreNoVariables =
(GetInput()->GetInfo().GetAttributes().GetNumberOfVariables() <= 0);
if (thereAreNoVariables)
{
if (PAR_Rank() == 0)
{
vtkRectilinearGrid *rg = CreateGrid(bounds, width, height, depth,
0, width, 0, height, cellCenteredOutput, is3D);
avtDataTree_p tree = new avtDataTree(rg, 0);
rg->Delete();
SetOutputDataTree(tree);
}
else
{
//
// Putting in a NULL data tree can lead to seg faults, etc.
//
avtDataTree_p dummy = new avtDataTree();
SetOutputDataTree(dummy);
}
return;
}
//
// World space is a right-handed coordinate system. Image space (as used
// in the sample point extractor) is a left-handed coordinate system.
// This is because large X is at the right and large Y is at the top.
// The z-buffer has the closest points at z=0, so Z is going away from the
// screen ===> left handed coordinate system. If we reflect across X,
// then this will account for the difference between the coordinate
// systems.
//
scale[0] *= -1.;
//
// We don't want an Update to go all the way up the pipeline, so make
// a terminating source corresponding to our input.
//
avtDataset_p ds;
avtDataObject_p dObj = GetInput();
CopyTo(ds, dObj);
avtSourceFromAVTDataset termsrc(ds);
//
// The sample point extractor expects everything to be in image space.
//
avtWorldSpaceToImageSpaceTransform trans(view, scale);
trans.SetInput(termsrc.GetOutput());
bool doKernel =
(GetInput()->GetInfo().GetAttributes().GetTopologicalDimension() == 0);
avtSamplePointExtractor extractor(width, height, depth);
extractor.SendCellsMode(false);
extractor.Set3DMode(is3D);
extractor.SetInput(trans.GetOutput());
if (doKernel)
extractor.SetKernelBasedSampling(true);
avtSamplePoints_p samples = extractor.GetTypedOutput();
//
// If the selection this filter exists to create has already been handled,
// or if there are no pieces for this processor to process, then we can skip
// execution. But, take care to emulate the same collective
// calls other processors may make before returning.
//
if (GetInput()->GetInfo().GetAttributes().GetSelectionApplied(selID))
{
debug1 << "Bypassing Resample operator because database plugin "
"claims to have applied the selection already" << endl;
SetOutputDataTree(GetInputDataTree());
// we can save a lot of time if we know everyone can bypass
if (UnifyMaximumValue(0) == 0)
return;
// here is some dummied up code to match collective calls below
int effectiveVars = samples->GetNumberOfRealVariables();
double *ptrtmp = new double[width*height*depth];
for (int jj = 0; jj < width*height*depth; jj++)
ptrtmp[jj] = -FLT_MAX;
for (i = 0 ; i < effectiveVars ; i++)
Collect(ptrtmp, width*height*depth);
delete [] ptrtmp;
return;
}
else
{
UnifyMaximumValue(1);
}
//
//
// PROBLEM SIZED WORK OCCURS BEYOND THIS POINT
// If you add (or remove) collective calls below this point, make sure to
// put matching sequence into bypass code above
//
//
avtSamplePointCommunicator communicator;
avtImagePartition partition(width, height, PAR_Size(), PAR_Rank());
communicator.SetImagePartition(&partition);
bool doDistributedResample = false;
#ifdef PARALLEL
doDistributedResample = atts.GetDistributedResample();
#endif
if (doDistributedResample)
{
partition.SetShouldProduceOverlaps(true);
avtDataObject_p dob;
CopyTo(dob, samples);
communicator.SetInput(dob);
samples = communicator.GetTypedOutput();
}
// Always set up an arbitrator, even if user selected random.
bool arbLessThan = !atts.GetUseArbitrator() || atts.GetArbitratorLessThan();
std::string arbName = atts.GetArbitratorVarName();
if (arbName == "default")
arbName = primaryVariable;
extractor.SetUpArbitrator(arbName, arbLessThan);
//
// Since this is Execute, forcing an update is okay...
//
samples->Update(GetGeneralContract());
if (samples->GetInfo().GetValidity().HasErrorOccurred())
{
GetOutput()->GetInfo().GetValidity().ErrorOccurred();
GetOutput()->GetInfo().GetValidity().SetErrorMessage(
samples->GetInfo().GetValidity().GetErrorMessage());
}
//
// Create a rectilinear dataset that is stretched according to the
// original bounds.
//
int width_start = 0;
int width_end = width;
int height_start = 0;
int height_end = height;
if (doDistributedResample)
{
partition.GetThisPartition(width_start, width_end, height_start,
height_end);
width_end += 1;
height_end += 1;
}
//
// If we have more processors than domains, we have to handle that
// gracefully. Communicate how many variables there are so that those
// that don't have data can play well.
//
int realVars = samples->GetNumberOfRealVariables();
int numArrays = realVars;
if (doKernel)
numArrays++;
vtkDataArray **vars = new vtkDataArray*[numArrays];
for (i = 0 ; i < numArrays ; i++)
{
vars[i] = vtkDoubleArray::New();
if (doKernel && (i == numArrays-1))
vars[i]->SetNumberOfComponents(1);
else
{
vars[i]->SetNumberOfComponents(samples->GetVariableSize(i));
vars[i]->SetName(samples->GetVariableName(i).c_str());
}
}
if (doKernel)
samples->GetVolume()->SetUseKernel(true);
avtImagePartition *ip = NULL;
if (doDistributedResample)
ip = &partition;
// We want all uncovered regions to get the default value. That is
// what the first argument of GetVariables is for. But if the
// default value is large, then it will screw up the collect call below,
// which uses MPI_MAX for an all reduce. So give uncovered regions very
// small values now (-FLT_MAX) and then replace them later.
double defaultPlaceholder = -FLT_MAX;
samples->GetVolume()->GetVariables(defaultPlaceholder, vars,
numArrays, ip);
if (!doDistributedResample)
{
//
// Collect will perform the parallel collection. Does nothing in
// serial. This will only be valid on processor 0.
//
for (i = 0 ; i < numArrays ; i++)
{
double *ptr = (double *) vars[i]->GetVoidPointer(0);
Collect(ptr, vars[i]->GetNumberOfComponents()*width*height*depth);
}
}
// Now replace the -FLT_MAX's with the default value. (See comment above.)
for (i = 0 ; i < numArrays ; i++)
{
int numTups = vars[i]->GetNumberOfComponents()
* vars[i]->GetNumberOfTuples();
if (numTups > 0)
{
double *ptr = (double *) vars[i]->GetVoidPointer(0);
for (j = 0 ; j < numTups ; j++)
ptr[j] = (ptr[j] == defaultPlaceholder
? atts.GetDefaultVal()
: ptr[j]);
}
}
bool iHaveData = false;
if (doDistributedResample)
iHaveData = true;
if (PAR_Rank() == 0)
iHaveData = true;
if (height_end > height)
iHaveData = false;
if (iHaveData)
{
vtkRectilinearGrid *rg = CreateGrid(bounds, width, height, depth,
width_start, width_end, height_start,
height_end, cellCenteredOutput, is3D);
if (doKernel)
{
double min_weight = avtPointExtractor::GetMinimumWeightCutoff();
vtkDataArray *weights = vars[numArrays-1];
int numVals = weights->GetNumberOfTuples();
for (i = 0 ; i < realVars ; i++)
{
for (j = 0 ; j < vars[i]->GetNumberOfComponents() ; j++)
{
for (k = 0 ; k < numVals ; k++)
{
double weight = weights->GetTuple1(k);
if (weight <= min_weight)
vars[i]->SetComponent(k, j, atts.GetDefaultVal());
else
vars[i]->SetComponent(k, j,
vars[i]->GetComponent(k, j) / weight);
}
}
}
}
//
// Attach these variables to our rectilinear grid.
//
for (i = 0 ; i < realVars ; i++)
{
const char *varname = vars[i]->GetName();
if (strcmp(varname, primaryVariable) == 0)
{
if (vars[i]->GetNumberOfComponents() == 3)
if (cellCenteredOutput)
rg->GetCellData()->SetVectors(vars[i]);
else
rg->GetPointData()->SetVectors(vars[i]);
else if (vars[i]->GetNumberOfComponents() == 1)
{
if (cellCenteredOutput)
{
rg->GetCellData()->AddArray(vars[i]);
rg->GetCellData()->SetScalars(vars[i]);
}
else
{
rg->GetPointData()->AddArray(vars[i]);
rg->GetPointData()->SetScalars(vars[i]);
}
}
else
{
if (cellCenteredOutput)
rg->GetCellData()->AddArray(vars[i]);
else
rg->GetPointData()->AddArray(vars[i]);
}
}
else
{
if (cellCenteredOutput)
rg->GetCellData()->AddArray(vars[i]);
else
rg->GetPointData()->AddArray(vars[i]);
}
}
avtDataTree_p tree = new avtDataTree(rg, 0);
rg->Delete();
SetOutputDataTree(tree);
}
else
{
//
// Putting in a NULL data tree can lead to seg faults, etc.
//
avtDataTree_p dummy = new avtDataTree();
SetOutputDataTree(dummy);
}
for (i = 0 ; i < numArrays ; i++)
{
vars[i]->Delete();
}
delete [] vars;
}
void
avtSurfCompPrepFilter::Execute(void)
{
avtDataObject_p dObj = GetInput();
avtDataset_p ds;
CopyTo(ds, dObj);
avtSourceFromAVTDataset termsrc(ds);
avtDataObject_p data = termsrc.GetOutput();
//
// To do our sampling, we will first convert to the appropriate coordinate
// system -- cartesian, cylindrical, or spherical.
//
avtCoordSystemConvert toCoordSys;
toCoordSys.SetInputCoordSys(avtCoordSystemConvert::CARTESIAN);
switch (atts.GetCoordSystem())
{
case SurfCompPrepAttributes::Cartesian:
toCoordSys.SetOutputCoordSys(avtCoordSystemConvert::CARTESIAN);
break;
case SurfCompPrepAttributes::Cylindrical:
toCoordSys.SetOutputCoordSys(avtCoordSystemConvert::CYLINDRICAL);
break;
case SurfCompPrepAttributes::Spherical:
toCoordSys.SetOutputCoordSys(avtCoordSystemConvert::SPHERICAL);
break;
}
toCoordSys.SetInput(data);
//
// The extractor only extracts sample points within the view frustum
// {(-1., 1.), (-1., 1.), (0., 1)}. So transform our data into that space.
//
avtSimilarityTransformFilter transToFrustum;
SimilarityTransformAttributes st_atts;
st_atts.SetDoScale(1);
st_atts.SetDoTranslate(1);
switch (atts.GetCoordSystem())
{
case SurfCompPrepAttributes::Cartesian:
{
double X1 = atts.GetXStart();
double X2 = atts.GetXStop();
double center = (X1 + X2) / 2;
double range = X2 - X1;
range = (range == 0. ? 1 : range);
double scale = 2. / range;
st_atts.SetScaleX(scale);
st_atts.SetTranslateX(-center*scale);
double Y1 = atts.GetYStart();
double Y2 = atts.GetYStop();
center = (Y1 + Y2) / 2;
range = Y2 - Y1;
range = (range == 0. ? 1 : range);
scale = 2. / range;
st_atts.SetTranslateY(-center*scale);
st_atts.SetScaleY(scale);
double Z1 = atts.GetZStart();
double Z2 = atts.GetZStop();
center = (Z1 + Z2) / 2;
range = Z2 - Z1;
range = (range == 0. ? 1 : range);
scale = 1. / range;
st_atts.SetScaleZ(scale);
st_atts.SetTranslateZ(0.5-center*scale);
break;
}
case SurfCompPrepAttributes::Cylindrical:
{
double X1 = atts.GetThetaStart() * DegreesToRadians();
double X2 = atts.GetThetaStop() * DegreesToRadians();
double center = (X1 + X2) / 2;
double range = X2 - X1;
range = (range == 0. ? 1 : range);
double scale = 2. / range;
st_atts.SetScaleX(scale);
st_atts.SetTranslateX(-center*scale);
double Y1 = atts.GetZStart();
double Y2 = atts.GetZStop();
center = (Y1 + Y2) / 2;
range = Y2 - Y1;
range = (range == 0. ? 1 : range);
scale = 2. / range;
st_atts.SetScaleY(scale);
st_atts.SetTranslateY(-center*scale);
double Z1 = atts.GetStartRadius();
double Z2 = atts.GetEndRadius();
center = (Z1 + Z2) / 2;
range = Z2 - Z1;
range = (range == 0. ? 1 : range);
scale = 1. / range;
st_atts.SetScaleZ(scale);
st_atts.SetTranslateZ(0.5-center*scale);
break;
}
case SurfCompPrepAttributes::Spherical:
{
double X1 = atts.GetThetaStart() * DegreesToRadians();
double X2 = atts.GetThetaStop() * DegreesToRadians();
double center = (X1 + X2) / 2;
double range = X2 - X1;
range = (range == 0. ? 1 : range);
double scale = 2. / range;
st_atts.SetScaleX(scale);
st_atts.SetTranslateX(-center*scale);
double Y1 = atts.GetPhiStart() * DegreesToRadians();
double Y2 = atts.GetPhiStop() * DegreesToRadians();
center = (Y1 + Y2) / 2;
range = Y2 - Y1;
range = (range == 0. ? 1 : range);
scale = 2. / range;
st_atts.SetScaleY(scale);
st_atts.SetTranslateY(-center*scale);
double Z1 = atts.GetStartRadius();
double Z2 = atts.GetEndRadius();
center = (Z1 + Z2) / 2;
range = Z2 - Z1;
range = (range == 0. ? 1 : range);
scale = 1. / range;
st_atts.SetScaleZ(scale);
st_atts.SetTranslateZ(0.5-center*scale);
break;
}
}
transToFrustum.SetAtts(&st_atts);
transToFrustum.SetInput(toCoordSys.GetOutput());
//
// The sample point extractor will do the actually extracting. The number
// of samples in each dimension depends on the attributes and what
// coordinate system we are in.
//
int numX = 0;
int numY = 0;
int numZ = 0;
switch (atts.GetCoordSystem())
{
case SurfCompPrepAttributes::Cartesian:
{
numX = atts.GetXSteps();
numY = atts.GetYSteps();
numZ = atts.GetZSteps();
break;
}
case SurfCompPrepAttributes::Cylindrical:
{
numX = atts.GetThetaSteps();
numY = atts.GetZSteps();
numZ = atts.GetRadiusSteps();
break;
}
case SurfCompPrepAttributes::Spherical:
{
numX = atts.GetThetaSteps();
numY = atts.GetPhiSteps();
numZ = atts.GetRadiusSteps();
break;
}
}
avtSamplePointExtractor extractor(numX, numY, numZ);
extractor.SetInput(transToFrustum.GetOutput());
avtDataObject_p dob = extractor.GetOutput();
avtImagePartition imagePartition(numX, numY);
#ifdef PARALLEL
//
// If we are in parallel, we will need to communicate the sample points
// so that we can correctly infer the surface in the next step.
//
avtSamplePointCommunicator sampCommunicator;
sampCommunicator.SetImagePartition(&imagePartition);
sampCommunicator.SetInput(dob);
dob = sampCommunicator.GetOutput();
#else
//
// The sample communicator will make this gets called, so we only need
// to call this if we are not using that module.
//
int *dummy = new int[numY];
for (int i = 0 ; i < numY ; i++)
dummy[i] = 500;
imagePartition.EstablishPartitionBoundaries(dummy);
delete [] dummy;
#endif
//
// The sample point to surface filter will determine a surface from the
// sample points. The surface can be the front surface, the back
// surface, and the middle surface. The output surface will still be
// in the image frustum.
//
SurfaceType st = NOT_SPECIFIED;
switch (atts.GetSurfaceType())
{
case SurfCompPrepAttributes::Closest:
st = FRONT_SURFACE;
break;
case SurfCompPrepAttributes::Average:
st = MIDDLE_SURFACE;
break;
case SurfCompPrepAttributes::Farthest:
st = BACK_SURFACE;
break;
}
avtSamplePointToSurfaceFilter sampsToSurface;
sampsToSurface.SetImagePartition(&imagePartition);
sampsToSurface.SetSurfaceType(st);
sampsToSurface.SetInput(dob);
//
// Now transform the data out of the image frustum and back into the
// coordinate system space.
//
avtSimilarityTransformFilter outOfFrustum;
st_atts.SetDoScale(1);
st_atts.SetDoTranslate(1);
switch (atts.GetCoordSystem())
{
case SurfCompPrepAttributes::Cartesian:
{
double X1 = atts.GetXStart();
double X2 = atts.GetXStop();
double center = (X1 + X2) / 2;
double range = X2 - X1;
range = (range == 0. ? 1 : range);
double scale = range / 2.;
st_atts.SetTranslateX(center);
st_atts.SetScaleX(scale);
double Y1 = atts.GetYStart();
double Y2 = atts.GetYStop();
center = (Y1 + Y2) / 2;
range = Y2 - Y1;
range = (range == 0. ? 1 : range);
scale = range / 2.;
st_atts.SetScaleY(scale);
st_atts.SetTranslateY(center);
double Z1 = atts.GetZStart();
double Z2 = atts.GetZStop();
center = (Z1 + Z2) / 2;
range = Z2 - Z1;
range = (range == 0. ? 1 : range);
scale = range;
st_atts.SetScaleZ(scale);
st_atts.SetTranslateZ(center - 0.5*scale);
break;
}
case SurfCompPrepAttributes::Cylindrical:
{
double X1 = atts.GetThetaStart() * DegreesToRadians();
double X2 = atts.GetThetaStop() * DegreesToRadians();
double center = (X1 + X2) / 2;
double range = X2 - X1;
range = (range == 0. ? 1 : range);
double scale = range / 2.;
st_atts.SetScaleX(scale);
st_atts.SetTranslateX(center);
double Y1 = atts.GetZStart();
double Y2 = atts.GetZStop();
center = (Y1 + Y2) / 2;
range = Y2 - Y1;
range = (range == 0. ? 1 : range);
scale = range / 2.;
st_atts.SetScaleY(scale);
st_atts.SetTranslateY(center);
double Z1 = atts.GetStartRadius();
double Z2 = atts.GetEndRadius();
center = (Z1 + Z2) / 2;
range = Z2 - Z1;
range = (range == 0. ? 1 : range);
scale = range;
st_atts.SetScaleZ(scale);
st_atts.SetTranslateZ(center - 0.5*scale);
break;
}
case SurfCompPrepAttributes::Spherical:
{
double X1 = atts.GetThetaStart() * DegreesToRadians();
double X2 = atts.GetThetaStop() * DegreesToRadians();
double center = (X1 + X2) / 2;
st_atts.SetTranslateX(center);
double range = X2 - X1;
range = (range == 0. ? 1 : range);
double scale = range / 2.;
st_atts.SetScaleX(scale);
double Y1 = atts.GetPhiStart() * DegreesToRadians();
double Y2 = atts.GetPhiStop() * DegreesToRadians();
center = (Y1 + Y2) / 2;
st_atts.SetTranslateY(center);
range = Y2 - Y1;
range = (range == 0. ? 1 : range);
scale = range / 2.;
st_atts.SetScaleY(scale);
double Z1 = atts.GetStartRadius();
double Z2 = atts.GetEndRadius();
center = (Z1 + Z2) / 2;
range = Z2 - Z1;
range = (range == 0. ? 1 : range);
scale = range;
st_atts.SetScaleZ(scale);
st_atts.SetTranslateZ(center - 0.5*scale);
break;
}
}
outOfFrustum.SetAtts(&st_atts);
outOfFrustum.SetInput(sampsToSurface.GetOutput());
//
// We are now back in the coordinate system. Let's get back to Cartesian
// coordinates.
//
avtCoordSystemConvert backToCartesian;
switch (atts.GetCoordSystem())
{
case SurfCompPrepAttributes::Cartesian:
backToCartesian.SetInputCoordSys(avtCoordSystemConvert::CARTESIAN);
break;
case SurfCompPrepAttributes::Cylindrical:
backToCartesian.SetInputCoordSys(avtCoordSystemConvert::CYLINDRICAL);
break;
case SurfCompPrepAttributes::Spherical:
backToCartesian.SetInputCoordSys(avtCoordSystemConvert::SPHERICAL);
break;
}
backToCartesian.SetOutputCoordSys(avtCoordSystemConvert::CARTESIAN);
backToCartesian.SetInput(outOfFrustum.GetOutput());
//
// The last few hundred lines of code have set up a network. Now force
// that network to execute.
//
backToCartesian.Update(GetGeneralContract());
//
// Now copy the output of that execution to be the output of this filter.
//
GetOutput()->Copy(*(backToCartesian.GetOutput()));
}
avtImage_p
avtVolumeFilter::RenderImage(avtImage_p opaque_image,
const WindowAttributes &window)
{
if (atts.GetRendererType() == VolumeAttributes::RayCastingSLIVR){
return RenderImageRaycastingSLIVR(opaque_image,window);
}
//
// We need to create a dummy pipeline with the volume renderer that we
// can force to execute within our "Execute". Start with the source.
//
avtSourceFromAVTDataset termsrc(GetTypedInput());
//
// Set up the volume renderer.
//
avtRayTracer *software = new avtRayTracer;
software->SetInput(termsrc.GetOutput());
software->InsertOpaqueImage(opaque_image);
software->SetRayCastingSLIVR(false);
unsigned char vtf[4*256];
atts.GetTransferFunction(vtf);
avtOpacityMap om(256);
if ((atts.GetRendererType() == VolumeAttributes::RayCasting) && (atts.GetSampling() == VolumeAttributes::Trilinear))
om.SetTable(vtf, 256, atts.GetOpacityAttenuation()*2.0 - 1.0, atts.GetRendererSamples());
else
om.SetTable(vtf, 256, atts.GetOpacityAttenuation());
double actualRange[2];
bool artificialMin = atts.GetUseColorVarMin();
bool artificialMax = atts.GetUseColorVarMax();
if (!artificialMin || !artificialMax)
{
GetDataExtents(actualRange, primaryVariable);
UnifyMinMax(actualRange, 2);
}
double range[2];
range[0] = (artificialMin ? atts.GetColorVarMin() : actualRange[0]);
range[1] = (artificialMax ? atts.GetColorVarMax() : actualRange[1]);
if (atts.GetScaling() == VolumeAttributes::Log)
{
if (artificialMin)
if (range[0] > 0)
range[0] = log10(range[0]);
if (artificialMax)
if (range[1] > 0)
range[1] = log10(range[1]);
}
else if (atts.GetScaling() == VolumeAttributes::Skew)
{
if (artificialMin)
{
double newMin = vtkSkewValue(range[0], range[0], range[1],
atts.GetSkewFactor());
range[0] = newMin;
}
if (artificialMax)
{
double newMax = vtkSkewValue(range[1], range[0], range[1],
atts.GetSkewFactor());
range[1] = newMax;
}
}
om.SetMin(range[0]);
om.SetMax(range[1]);
if (atts.GetRendererType() == VolumeAttributes::RayCastingIntegration)
{
if (!artificialMin)
range[0] = 0.;
if (!artificialMax)
{
/* Don't need this code, because the rays will be in depth ... 0->1.
double bounds[6];
GetSpatialExtents(bounds);
UnifyMinMax(bounds, 6);
double diag = sqrt((bounds[1]-bounds[0])*(bounds[1]-bounds[0]) +
(bounds[3]-bounds[2])*(bounds[3]-bounds[2]) +
(bounds[5]-bounds[4])*(bounds[5]-bounds[4]));
range[1] = (actualRange[1]*diag) / 2.;
*/
range[1] = (actualRange[1]) / 4.;
}
}
//
// Determine which variables to use and tell the ray function.
//
VarList vl;
avtDataset_p input = GetTypedInput();
avtDatasetExaminer::GetVariableList(input, vl);
int primIndex = -1;
int opacIndex = -1;
int gradIndex = -1;
int count = 0;
char gradName[128];
const char *gradvar = atts.GetOpacityVariable().c_str();
if (strcmp(gradvar, "default") == 0)
gradvar = primaryVariable;
// This name is explicitly sent to the avtGradientExpression in
// the avtVolumePlot.
SNPRINTF(gradName, 128, "_%s_gradient", gradvar);
for (int i = 0 ; i < vl.nvars ; i++)
{
if ((strstr(vl.varnames[i].c_str(), "vtk") != NULL) &&
(strstr(vl.varnames[i].c_str(), "avt") != NULL))
continue;
if (vl.varnames[i] == primaryVariable)
{
primIndex = count;
}
if (vl.varnames[i] == atts.GetOpacityVariable())
{
opacIndex = count;
}
if (vl.varnames[i] == gradName)
{
gradIndex = count;
}
count += vl.varsizes[i];
}
if (primIndex == -1)
{
if (vl.nvars <= 0)
{
debug1 << "Could not locate primary variable "
<< primaryVariable << ", assuming that we are running "
<< "in parallel and have more processors than domains."
<< endl;
}
else
{
EXCEPTION1(InvalidVariableException, primaryVariable);
}
}
if (opacIndex == -1)
{
if (atts.GetOpacityVariable() == "default")
{
opacIndex = primIndex;
}
else if (vl.nvars <= 0)
{
debug1 << "Could not locate opacity variable "
<< atts.GetOpacityVariable().c_str() << ", assuming that we "
<< "are running in parallel and have more processors "
<< "than domains." << endl;
}
else
{
EXCEPTION1(InvalidVariableException,atts.GetOpacityVariable());
}
}
if ( atts.GetRendererType() != VolumeAttributes::RayCastingIntegration &&
atts.GetLightingFlag() &&
gradIndex == -1)
{
if (vl.nvars <= 0)
{
debug1 << "Could not locate gradient variable, assuming that we "
<< "are running in parallel and have more processors "
<< "than domains." << endl;
}
else
{
EXCEPTION1(InvalidVariableException,gradName);
}
}
int newPrimIndex = UnifyMaximumValue(primIndex);
if (primIndex >= 0 && newPrimIndex != primIndex)
{
//
// We shouldn't ever have different orderings for our variables.
//
EXCEPTION1(InvalidVariableException, primaryVariable);
}
primIndex = newPrimIndex;
int newOpacIndex = UnifyMaximumValue(opacIndex);
if (opacIndex >= 0 && newOpacIndex != opacIndex)
{
//
// We shouldn't ever have different orderings for our variables.
//
EXCEPTION1(InvalidVariableException, atts.GetOpacityVariable());
}
opacIndex = newOpacIndex;
int newGradIndex = UnifyMaximumValue(gradIndex);
if (gradIndex >= 0 && newGradIndex != gradIndex)
{
//
// We shouldn't ever have different orderings for our variables.
//
EXCEPTION1(InvalidVariableException, gradName);
}
gradIndex = newGradIndex;
//
// Set up lighting
//
avtFlatLighting fl;
avtLightingModel *lm = &fl;
double gradMax = 0.0, lightingPower = 1.0;
if (atts.GetLowGradientLightingReduction() != VolumeAttributes::Off)
{
gradMax = atts.GetLowGradientLightingClampValue();
if (atts.GetLowGradientLightingClampFlag() == false)
{
double gradRange[2] = {0,0};
GetDataExtents(gradRange, gradName);
gradMax = gradRange[1];
}
switch (atts.GetLowGradientLightingReduction())
{
case VolumeAttributes::Lowest: lightingPower = 1./16.; break;
case VolumeAttributes::Lower: lightingPower = 1./8.; break;
case VolumeAttributes::Low: lightingPower = 1./4.; break;
case VolumeAttributes::Medium: lightingPower = 1./2.; break;
case VolumeAttributes::High: lightingPower = 1.; break;
case VolumeAttributes::Higher: lightingPower = 2.; break;
case VolumeAttributes::Highest: lightingPower = 4.; break;
default: break;
}
}
avtPhong phong(gradMax, lightingPower);
if (atts.GetLightingFlag())
{
lm = &phong;
}
else
{
lm = &fl;
}
avtOpacityMap *om2 = NULL;
if (primIndex == opacIndex)
{
// Note that we are forcing the color variables range onto the
// opacity variable.
om2 = &om;
}
else
{
om2 = new avtOpacityMap(256);
om2->SetTable(vtf, 256, atts.GetOpacityAttenuation());
double range[2];
bool artificialMin = atts.GetUseOpacityVarMin();
bool artificialMax = atts.GetUseOpacityVarMax();
if (!artificialMin || !artificialMax)
{
InputSetActiveVariable(atts.GetOpacityVariable().c_str());
avtDatasetExaminer::GetDataExtents(input, range);
UnifyMinMax(range, 2);
InputSetActiveVariable(primaryVariable);
}
range[0] = (artificialMin ? atts.GetOpacityVarMin() : range[0]);
range[1] = (artificialMax ? atts.GetOpacityVarMax() : range[1]);
om2->SetMin(range[0]);
om2->SetMax(range[1]);
// LEAK!!
}
avtCompositeRF *compositeRF = new avtCompositeRF(lm, &om, om2);
if (atts.GetRendererType() == VolumeAttributes::RayCasting && atts.GetSampling() == VolumeAttributes::Trilinear){
compositeRF->SetTrilinearSampling(true);
double *matProp = atts.GetMaterialProperties();
double materialPropArray[4];
materialPropArray[0] = matProp[0];
materialPropArray[1] = matProp[1];
materialPropArray[2] = matProp[2];
materialPropArray[3] = matProp[3];
compositeRF->SetMaterial(materialPropArray);
}
else
compositeRF->SetTrilinearSampling(false);
avtIntegrationRF *integrateRF = new avtIntegrationRF(lm);
compositeRF->SetColorVariableIndex(primIndex);
compositeRF->SetOpacityVariableIndex(opacIndex);
if (atts.GetLightingFlag())
compositeRF->SetGradientVariableIndex(gradIndex);
integrateRF->SetPrimaryVariableIndex(primIndex);
integrateRF->SetRange(range[0], range[1]);
if (atts.GetSampling() == VolumeAttributes::KernelBased)
{
software->SetKernelBasedSampling(true);
compositeRF->SetWeightVariableIndex(count);
}
if (atts.GetRendererType() == VolumeAttributes::RayCasting && atts.GetSampling() == VolumeAttributes::Trilinear)
software->SetTrilinear(true);
else
software->SetTrilinear(false);
if (atts.GetRendererType() == VolumeAttributes::RayCastingIntegration)
software->SetRayFunction(integrateRF);
else
software->SetRayFunction(compositeRF);
software->SetSamplesPerRay(atts.GetSamplesPerRay());
const int *size = window.GetSize();
software->SetScreen(size[0], size[1]);
const View3DAttributes &view = window.GetView3D();
avtViewInfo vi;
CreateViewInfoFromViewAttributes(vi, view);
avtDataObject_p inputData = GetInput();
int width_,height_,depth_;
if (GetLogicalBounds(inputData, width_,height_,depth_))
{
// if we have logical bounds, compute the slices automatically
double viewDirection[3];
int numSlices;
viewDirection[0] = (view.GetViewNormal()[0] > 0)? view.GetViewNormal()[0]: -view.GetViewNormal()[0];
viewDirection[1] = (view.GetViewNormal()[1] > 0)? view.GetViewNormal()[1]: -view.GetViewNormal()[1];
viewDirection[2] = (view.GetViewNormal()[2] > 0)? view.GetViewNormal()[2]: -view.GetViewNormal()[2];
numSlices = (width_*viewDirection[0] + height_*viewDirection[1] + depth_*viewDirection[2]) * atts.GetRendererSamples();
if (atts.GetRendererType() == VolumeAttributes::RayCasting && atts.GetSampling() == VolumeAttributes::Trilinear)
software->SetSamplesPerRay(numSlices);
}
software->SetView(vi);
if (atts.GetRendererType() == VolumeAttributes::RayCastingIntegration)
{
integrateRF->SetDistance(view.GetFarPlane()-view.GetNearPlane());
integrateRF->SetWindowSize(size[0], size[1]);
}
double view_dir[3];
view_dir[0] = vi.focus[0] - vi.camera[0];
view_dir[1] = vi.focus[1] - vi.camera[1];
view_dir[2] = vi.focus[2] - vi.camera[2];
double mag = sqrt(view_dir[0]*view_dir[0] + view_dir[1]*view_dir[1]
+ view_dir[2]*view_dir[2]);
if (mag != 0.) // only 0 if focus and camera are the same
{
view_dir[0] /= mag;
view_dir[1] /= mag;
view_dir[2] /= mag;
}
lm->SetViewDirection(view_dir);
lm->SetViewUp(vi.viewUp);
lm->SetLightInfo(window.GetLights());
const RenderingAttributes &render_atts = window.GetRenderAtts();
if (render_atts.GetSpecularFlag())
{
lm->SetSpecularInfo(render_atts.GetSpecularFlag(),
render_atts.GetSpecularCoeff(),
render_atts.GetSpecularPower());
}
//
// Set the volume renderer's background color and mode from the
// window attributes.
//
software->SetBackgroundMode(window.GetBackgroundMode());
software->SetBackgroundColor(window.GetBackground());
software->SetGradientBackgroundColors(window.GetGradBG1(),
window.GetGradBG2());
//
// We have to set up a sample point "arbitrator" to allow small cells
// to be included in the final picture.
//
avtOpacityMapSamplePointArbitrator arb(om2, opacIndex);
avtRay::SetArbitrator(&arb);
//
// Do the funny business to force an update.
//
avtDataObject_p dob = software->GetOutput();
dob->Update(GetGeneralContract());
if (atts.GetRendererType() == VolumeAttributes::RayCastingIntegration)
integrateRF->OutputRawValues("integration.data");
//
// Free up some memory and clean up.
//
delete software;
avtRay::SetArbitrator(NULL);
delete compositeRF;
delete integrateRF;
//
// Copy the output of the volume renderer to our output.
//
avtImage_p output;
CopyTo(output, dob);
return output;
}
avtImage_p
avtVolumeFilter::RenderImageRaycastingSLIVR(avtImage_p opaque_image,
const WindowAttributes &window)
{
//
// We need to create a dummy pipeline with the volume renderer that we
// can force to execute within our "Execute". Start with the source.
//
avtSourceFromAVTDataset termsrc(GetTypedInput());
//
// Set up the volume renderer.
//
avtRayTracer *software = new avtRayTracer;
software->SetInput(termsrc.GetOutput());
software->InsertOpaqueImage(opaque_image);
unsigned char vtf[4*256];
atts.GetTransferFunction(vtf);
avtOpacityMap om(256);
om.SetTableFloat(vtf, 256, atts.GetOpacityAttenuation()*2.0 - 1.0, atts.GetRendererSamples());
double actualRange[2];
bool artificialMin = atts.GetUseColorVarMin();
bool artificialMax = atts.GetUseColorVarMax();
if (!artificialMin || !artificialMax)
{
GetDataExtents(actualRange, primaryVariable);
UnifyMinMax(actualRange, 2);
}
double range[2];
range[0] = (artificialMin ? atts.GetColorVarMin() : actualRange[0]);
range[1] = (artificialMax ? atts.GetColorVarMax() : actualRange[1]);
if (atts.GetScaling() == VolumeAttributes::Log)
{
if (artificialMin)
if (range[0] > 0)
range[0] = log10(range[0]);
if (artificialMax)
if (range[1] > 0)
range[1] = log10(range[1]);
}
else if (atts.GetScaling() == VolumeAttributes::Skew)
{
if (artificialMin)
{
double newMin = vtkSkewValue(range[0], range[0], range[1],
atts.GetSkewFactor());
range[0] = newMin;
}
if (artificialMax)
{
double newMax = vtkSkewValue(range[1], range[0], range[1],
atts.GetSkewFactor());
range[1] = newMax;
}
}
om.SetMin(range[0]);
om.SetMax(range[1]);
//
// Determine which variables to use and tell the ray function.
//
VarList vl;
avtDataset_p input = GetTypedInput();
avtDatasetExaminer::GetVariableList(input, vl);
int primIndex = -1;
int opacIndex = -1;
int count = 0;
char gradName[128];
const char *gradvar = atts.GetOpacityVariable().c_str();
if (strcmp(gradvar, "default") == 0)
gradvar = primaryVariable;
// This name is explicitly sent to the avtGradientExpression in
// the avtVolumePlot.
SNPRINTF(gradName, 128, "_%s_gradient", gradvar);
for (int i = 0 ; i < vl.nvars ; i++)
{
if ((strstr(vl.varnames[i].c_str(), "vtk") != NULL) &&
(strstr(vl.varnames[i].c_str(), "avt") != NULL))
continue;
if (vl.varnames[i] == primaryVariable)
{
primIndex = count;
}
if (vl.varnames[i] == atts.GetOpacityVariable())
{
opacIndex = count;
}
// if (vl.varnames[i] == gradName)
// {
// gradIndex = count;
// }
count += vl.varsizes[i];
}
if (primIndex == -1)
{
if (vl.nvars <= 0)
{
debug1 << "Could not locate primary variable "
<< primaryVariable << ", assuming that we are running "
<< "in parallel and have more processors than domains."
<< endl;
}
else
{
EXCEPTION1(InvalidVariableException, primaryVariable);
}
}
if (opacIndex == -1)
{
if (atts.GetOpacityVariable() == "default")
{
opacIndex = primIndex;
}
else if (vl.nvars <= 0)
{
debug1 << "Could not locate opacity variable "
<< atts.GetOpacityVariable().c_str() << ", assuming that we "
<< "are running in parallel and have more processors "
<< "than domains." << endl;
}
else
{
EXCEPTION1(InvalidVariableException,atts.GetOpacityVariable());
}
}
//
// Set up lighting
//
avtFlatLighting fl;
avtLightingModel *lm = &fl;
if (atts.GetLightingFlag())
software->SetLighting(true);
else
software->SetLighting(false);
avtCompositeRF *compositeRF = new avtCompositeRF(lm, &om, &om);
double *matProp = atts.GetMaterialProperties();
double materialPropArray[4];
materialPropArray[0] = matProp[0];
materialPropArray[1] = matProp[1];
materialPropArray[2] = matProp[2];
materialPropArray[3] = matProp[3];
software->SetMatProperties(materialPropArray);
software->SetRayCastingSLIVR(true);
software->SetTrilinear(false);
software->SetTransferFn(&om);
software->SetRayFunction(compositeRF); // unsure about this one. RayFunction seems important
software->SetSamplesPerRay(atts.GetSamplesPerRay());
const int *size = window.GetSize();
software->SetScreen(size[0], size[1]);
const View3DAttributes &view = window.GetView3D();
avtViewInfo vi;
CreateViewInfoFromViewAttributes(vi, view);
avtDataObject_p inputData = GetInput();
int width_,height_,depth_;
if (GetLogicalBounds(inputData, width_,height_,depth_))
{
double viewDirection[3];
int numSlices;
viewDirection[0] = (view.GetViewNormal()[0] > 0)? view.GetViewNormal()[0]: -view.GetViewNormal()[0];
viewDirection[1] = (view.GetViewNormal()[1] > 0)? view.GetViewNormal()[1]: -view.GetViewNormal()[1];
viewDirection[2] = (view.GetViewNormal()[2] > 0)? view.GetViewNormal()[2]: -view.GetViewNormal()[2];
numSlices = (width_*viewDirection[0] + height_*viewDirection[1] + depth_*viewDirection[2]) * atts.GetRendererSamples();
software->SetSamplesPerRay(numSlices);
debug5 << "RayCastingSLIVR - slices: "<< numSlices << " : " << width_ << " , " << height_ << " , " << depth_ << endl;
}
software->SetView(vi);
double view_dir[3];
view_dir[0] = vi.focus[0] - vi.camera[0];
view_dir[1] = vi.focus[1] - vi.camera[1];
view_dir[2] = vi.focus[2] - vi.camera[2];
double mag = sqrt(view_dir[0]*view_dir[0] + view_dir[1]*view_dir[1]
+ view_dir[2]*view_dir[2]);
if (mag != 0.) // only 0 if focus and camera are the same
{
view_dir[0] /= mag;
view_dir[1] /= mag;
view_dir[2] /= mag;
}
software->SetViewDirection(view_dir);
software->SetViewUp(vi.viewUp);
double tempLightDir[3];
tempLightDir[0] = ((window.GetLights()).GetLight(0)).GetDirection()[0];
tempLightDir[1] = ((window.GetLights()).GetLight(0)).GetDirection()[1];
tempLightDir[2] = ((window.GetLights()).GetLight(0)).GetDirection()[2];
software->SetLightDirection(tempLightDir);
vtkCamera *camera = vtkCamera::New();
vi.SetCameraFromView(camera);
vtkMatrix4x4 *cameraMatrix = camera->GetViewTransformMatrix();
double modelViewMatrix[16];
modelViewMatrix[0] = cameraMatrix->GetElement(0,0);
modelViewMatrix[1] = cameraMatrix->GetElement(0,1);
modelViewMatrix[2] = cameraMatrix->GetElement(0,2);
modelViewMatrix[3] = cameraMatrix->GetElement(0,3);
modelViewMatrix[4] = cameraMatrix->GetElement(1,0);
modelViewMatrix[5] = cameraMatrix->GetElement(1,1);
modelViewMatrix[6] = cameraMatrix->GetElement(1,2);
modelViewMatrix[7] = cameraMatrix->GetElement(1,3);
modelViewMatrix[8] = cameraMatrix->GetElement(2,0);
modelViewMatrix[9] = cameraMatrix->GetElement(2,1);
modelViewMatrix[10] = cameraMatrix->GetElement(2,2);
modelViewMatrix[11] = cameraMatrix->GetElement(2,3);
modelViewMatrix[12] = cameraMatrix->GetElement(3,0);
modelViewMatrix[13] = cameraMatrix->GetElement(3,1);
modelViewMatrix[14] = cameraMatrix->GetElement(3,2);
modelViewMatrix[15] = cameraMatrix->GetElement(3,3);
software->SetModelViewMatrix(modelViewMatrix);
//
// Set the volume renderer's background color and mode from the
// window attributes.
//
software->SetBackgroundMode(window.GetBackgroundMode());
software->SetBackgroundColor(window.GetBackground());
software->SetGradientBackgroundColors(window.GetGradBG1(),
window.GetGradBG2());
//
// Do the funny business to force an update. ... and called avtDataObject
//
avtDataObject_p dob = software->GetOutput();
dob->Update(GetGeneralContract());
//
// Free up some memory and clean up.
//
delete software;
avtRay::SetArbitrator(NULL);
delete compositeRF;
//
// Copy the output of the volume renderer to our output.
//
avtImage_p output;
CopyTo(output, dob);
return output;
}
void
avtCracksClipperFilter::Execute(void)
{
#ifdef ENGINE
//
// Create an artificial pipeline.
//
avtDataObject_p dObj = GetInput();
avtDataset_p ds;
CopyTo(ds, dObj);
avtSourceFromAVTDataset termsrc(ds);
avtDataObject_p data = termsrc.GetOutput();
//
// Do the work of removing cracks
//
avtRemoveCracksFilter removeCracks;
removeCracks.SetAtts(&atts);
removeCracks.SetInput(data);
if (calculateDensity)
{
//
// Calculate volume for the new cells
//
avtVMetricVolume volume;
volume.SetOutputVariableName("ccvol");
volume.SetInput(removeCracks.GetOutput());
volume.UseVerdictHex(false);
//
// Calculate density
//
avtCracksDensityFilter density;
density.SetInput(volume.GetOutput());
density.SetVarName(varname);
//
// Force the network to execute
//
density.Update(GetGeneralContract());
//
// Copy output of the exectuion to the output of this fitler.
//
GetOutput()->Copy(*(density.GetOutput()));
}
else
{
//
// Force the network to execute
//
removeCracks.Update(GetGeneralContract());
//
// Copy output of the exectuion to the output of this fitler.
//
GetOutput()->Copy(*(removeCracks.GetOutput()));
}
#endif
}
void
avtTraceHistoryFilter::PerformIteration(int time, avtDataset_p &ds, bool doDisp)
{
int i;
// Store off the original expression list.
ParsingExprList *pel = ParsingExprList::Instance();
ExpressionList orig_list = *(pel->GetList());
avtContract_p spec = GetGeneralContract();
avtDataRequest_p dataRequest = spec->GetDataRequest();
int timestep = dataRequest->GetTimestep();
int newTimeIndex = timestep-time;
if (newTimeIndex < 0)
{
EXCEPTION1(VisItException, "You asked to trace back before the first"
" dump.");
}
ExpressionList new_list = *(pel->GetList());
std::vector<std::string> vars = atts.GetVars();
for (i = 0 ; i < vars.size () ; i++)
{
AddExpression(new_list, vars[i], newTimeIndex);
}
if (doDisp)
AddExpression(new_list, atts.GetDisplacement(), newTimeIndex);
*(pel->GetList()) = new_list;
avtSourceFromAVTDataset termsrc(ds);
avtDataObject_p data = termsrc.GetOutput();
avtExpressionEvaluatorFilter eef;
eef.SetInput(data);
avtDataRequest_p dataRequest2 = new avtDataRequest(dataRequest);
for (i = 0 ; i < vars.size() ; i++)
{
char exp_name[1024];
SNPRINTF(exp_name, 1024, "AVT_TRACE_HIST_%s", vars[i].c_str());
dataRequest2->AddSecondaryVariable(exp_name);
}
if (doDisp)
{
char disp_name[1024];
SNPRINTF(disp_name, 1024, "AVT_TRACE_HIST_%s",
atts.GetDisplacement().c_str());
avtDisplaceFilter disp;
disp.SetInput(eef.GetOutput());
disp.SetVariable(disp_name);
disp.SetFactor(1.);
dataRequest2->AddSecondaryVariable(disp_name);
avtContract_p spec2 = new avtContract(spec,
dataRequest2);
disp.Update(spec2);
ds = disp.GetTypedOutput();
}
else
{
avtContract_p spec2 = new avtContract(spec,
dataRequest2);
eef.Update(spec2);
ds = eef.GetTypedOutput();
}
// Restore the original expression list ... i.e. undo the temporary
// expressions we put in.
*(pel->GetList()) = orig_list;
}