void print_size_summary(FPSetCascading4 *fp)
{
uint64_t size_B1 = b1_size,
size_B2 = fp->bloom2->tai,
size_B3 = fp->bloom3->tai,
size_B4 = fp->bloom4->tai,
size_T4 = fp->false_positives->capacity() * FPSet::bits_per_element;
double total_size = (double)(size_B1 + size_B2 + size_B3 + size_B4 + size_T4);
fprintf(stderr,"Size of the Bloom table (B1) : %.2lf MB\n", toMB((double)size_B1));
fprintf(stderr,"Size of the Bloom table (B2) : %.2lf MB\n", toMB((double)size_B2));
fprintf(stderr,"Size of the Bloom table (B3) : %.2lf MB\n", toMB((double)size_B3));
fprintf(stderr,"Size of the Bloom table (B4) : %.2lf MB\n", toMB((double)size_B4));
fprintf(stderr,"Size of the FP table (T4) : %.2lf MB\n", toMB((double)size_T4));
fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid);
}
int
QZDir::getType(QString sub)
{
if (updateZ()==QZF_NONE) return QZF_NONE;
if (sub=="." || sub=="..") return QZF_DIR;
if (m_type&QZF_ZIP) {
QCString str;
toMB(str, sub, "euc-kr");
ZEntry *entry = m_dir.z->findByName(str);
if (!entry) return QZF_NONE;
if (entry->isDir())
return QZF_DIR;
else
return QZF_FILE;
} else {
QFileInfo finfo(m_dir.q->absPath()+"/"+sub);
if (finfo.isFile()) {
QString ext = finfo.extension(false);
//printf("EXT:%s\n", (const char*)ext);
if (ext.lower()=="zip") return QZF_DIR;
return QZF_FILE;
}
if (finfo.isDir())
return QZF_DIR;
return QZF_NONE;
}
}
void print_size_summary(FPSet *fp)
{
int bits_per_FP_element = FPSet::bits_per_element;
uint64_t size_B1 = b1_size,
size_T1 = fp->capacity() * FPSet::bits_per_element;
double total_size = (double)(size_B1 + size_T1);
fprintf(stderr,"Size of the Bloom table : %.2lf MB\n", toMB(size_B1) );
fprintf(stderr," %.2lf bits / solid kmer\n", b1_size/(double)(nbkmers_solid) );
fprintf(stderr, "Size of the FP table : %lli FP x %d bits = %.2lf MB \n", fp->capacity(), bits_per_FP_element, toMB((double)(size_T1)) );
fprintf(stderr," actual implementation : %.2lf bits / solid kmer\n", size_T1/(double)nbkmers_solid);
fprintf(stderr," assuming list of kmers, i.e. sizeof(kmer_type) bits / FP : %.2lf bits / solid kmer \n\n",(fp->capacity()*sizeof(kmer_type)*8LL)/(double)(nbkmers_solid));
fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid);
}
bool
QZDir::cd(QString str)
{
if (updateZ()==QZF_NONE) return false;
if (str.left(2)=="..") {
if (!this->cdUp()) return false;
if (str.length()>3 && str.at(2)=='/')
return this->cd(str.mid(3));
return true;
}
if (m_type&QZF_ZIP) {
QCString spath;
toMB(spath, str, "euc-kr");
ZEntry *entry = m_dir.z->findByName(spath);
if (entry==NULL || !entry->isDir()){
return false;
}
m_dir.z = (ZDirEntry*)entry;
return true;
} else {
QString c_path;
c_path = m_dir.q->path();
c_path += "/" + str;
ZEntry *entry;
QCString zname, sname;
int my_type = getNames(c_path, zname, sname, &entry);
if (!(my_type&QZF_DIR))
return false;
if (my_type==QZF_DIR)
return m_dir.q->cd(str);
m_type = my_type;
entry->grab();
m_dir.z = (ZDirEntry*)entry;
return true;
}
}
/**
* Get real name for file.
*/
int
getNames(const QString &full, QCString &zname, QCString &sname, ZEntry **buf)
{
QString zip_name, suname;
int prev_type = QZF_NONE;
if (QFile::exists(full)) {
QFileInfo qfi(full);
if (qfi.isDir())
return QZF_DIR;
if (qfi.isFile()) {
prev_type = QZF_FILE;
} else {
return QZF_NONE;
}
}
//printf("File[%s] does not exist!\n", (const char*)full);
/* finding zip file name */
int idx;
idx = full.length();
zip_name = full;
while(idx>=0) {
if (QFile::exists(zip_name))
break;
idx = full.findRev('/', idx);
if (idx<0)
return prev_type;
zip_name = full.left(idx);
idx--;
}
if (toMB(sname, full.mid(idx+1), "euc-kr")<0)
sname = full.mid(idx+1);
QFileInfo zdir(zip_name);
zip_name = zdir.absFilePath();
ZRootEntry *root = ZDirEntry::getEntry(zip_name.utf8());
if (root==NULL) {
if (zdir.extension(false)=="dz") {
zname = zip_name.utf8();
sname = NULL;
return QZF_DZ|QZF_FILE;
}
return prev_type;
}
ZEntry *entry = root->findByName(sname);
if (entry==NULL) {
return prev_type;
}
zname = zip_name.utf8();
if (buf) *buf = entry;
if (entry->isDir()) {
return QZF_ZIP|QZF_DIR;
} else {
return QZF_ZIP|QZF_FILE;
}
}
