/**
* @brief Read in files with arrays and join them into a single file
* @param argc
* @param argv[]
* @return
*/
int main (int argc, char *argv[]) {
AnyOption opt;
opt.setFlag ("help", 'h'); /* a flag (takes no argument), supporting long and short form */
opt.setOption ("verbose", 'v');
opt.setOption ("random", 'r');
opt.addUsage ("OA: unittest: Perform some checks on the code");
opt.addUsage ("Usage: unittest [OPTIONS]");
opt.addUsage ("");
opt.addUsage (" -v --verbose Print documentation");
opt.addUsage (" -r --random Seed for random number generator");
opt.processCommandArgs (argc, argv);
int verbose = opt.getIntValue ('v', 1);
int random = opt.getIntValue ('r', 0);
if (opt.getFlag ("help") || opt.getFlag ('h')) {
opt.printUsage ();
exit (0);
}
if (verbose) {
print_copyright ();
}
if (verbose >= 2) {
print_options (std::cout);
}
oaunittest (verbose, 1, random);
return 0;
}
void readoption(int argc, char *argv[], bool *convertDir,
QString *filename, QString *dir, QString *path)
{
/* 1. CREATE AN OBJECT */
AnyOption *opt = new AnyOption();
/* 2. SET PREFERENCES */
//opt->noPOSIX(); /* do not check for POSIX style character options */
//opt->setVerbose(); /* print warnings about unknown options */
//opt->autoUsagePrint(true); /* print usage for bad options */
/* 3. SET THE USAGE/HELP */
opt->addUsage( "" );
opt->addUsage( "Usage: " );
opt->addUsage( "" );
opt->addUsage( " -h --help Prints this help " );
opt->addUsage( " -f --filename FILENAME Filename to be converted " );
opt->addUsage( " -d --dir DIRECTORY File dir to be converted " );
opt->addUsage( " -p --path PATH Path where converted file saves " );
opt->addUsage( "" );
/* 4. SET THE OPTION STRINGS/CHARACTERS */
/* by default all options will be checked on the command line and from option/resource file */
opt->setFlag( "help", 'h' ); /* a flag (takes no argument), supporting long and short form */
opt->setOption( "filename", 'f' ); /* an option (takes an argument), supporting long and short form */
opt->setOption( "dir", 'd' ); /* an option (takes an argument), supporting long and short form */
opt->setOption( "path", 'p' ); /* an option (takes an argument), supporting long and short form */
/* 5. PROCESS THE COMMANDLINE AND RESOURCE FILE */
/* go through the command line and get the options */
opt->processCommandArgs( argc, argv );
if( ! opt->hasOptions()) { /* print usage if no options */
opt->printUsage();
delete opt;
return;
}
/* 6. GET THE VALUES */
if( opt->getFlag( "help" ) || opt->getFlag( 'h' ) )
opt->printUsage();
if( opt->getValue( 'f' ) != NULL || opt->getValue( "filename" ) != NULL ) {
*convertDir = false;
filename->append(QString(opt->getValue( 'f' )));
}
if( opt->getValue( 'd' ) != NULL || opt->getValue( "dir" ) != NULL ) {
*convertDir = true;
dir->append(QString(opt->getValue( 'd' )));
}
if( opt->getValue( 'p' ) != NULL || opt->getValue( "path" ) != NULL ) {
path->append(QString(opt->getValue( 'p' )));
}
/* 8. DONE */
delete opt;
}
void UpdaterOptions::parse(int argc, char** argv)
{
AnyOption parser;
parser.setOption("install-dir");
parser.setOption("package-dir");
parser.setOption("script");
parser.setOption("wait");
parser.setOption("mode");
parser.setFlag("version");
parser.setFlag("force-elevated");
parser.setFlag("auto-close");
parser.processCommandArgs(argc,argv);
if (parser.getValue("mode"))
{
mode = stringToMode(parser.getValue("mode"));
}
if (parser.getValue("install-dir"))
{
installDir = parser.getValue("install-dir");
}
if (parser.getValue("package-dir"))
{
packageDir = parser.getValue("package-dir");
}
if (parser.getValue("script"))
{
scriptPath = parser.getValue("script");
}
if (parser.getValue("wait"))
{
waitPid = static_cast<PLATFORM_PID>(atoll(parser.getValue("wait")));
}
showVersion = parser.getFlag("version");
forceElevated = parser.getFlag("force-elevated");
autoClose = parser.getFlag("auto-close");
if (installDir.empty())
{
// if no --install-dir argument is present, try parsing
// the command-line arguments in the old format (which uses
// a list of 'Key=Value' args)
parseOldFormatArgs(argc,argv);
}
}
/**
* @brief Read in files with arrays and join them into a single file
* @param argc
* @param argv[]
* @return
*/
int main (int argc, char *argv[]) {
AnyOption opt;
/* parse command line options */
opt.setFlag ("help", 'h'); /* a flag (takes no argument), supporting long and short form */
opt.setOption ("output", 'o');
opt.setOption ("format", 'f');
opt.setOption ("verbose", 'v');
opt.addUsage ("Orthonal Array Convert: convert array file into a different format");
opt.addUsage ("Usage: oaconvert [OPTIONS] [INPUTFILE] [OUTPUTFILE]");
opt.addUsage ("");
opt.addUsage (" -h --help Prints this help ");
opt.addUsage (" -f [FORMAT] Output format (default: TEXT, or BINARY) ");
opt.processCommandArgs (argc, argv);
int verbose = opt.getIntValue ("verbose", 2);
if (verbose > 0)
print_copyright ();
/* parse options */
if (opt.getFlag ("help") || opt.getFlag ('h') || opt.getArgc () == 0) {
opt.printUsage ();
exit (0);
}
const std::string outputprefix = opt.getStringValue ('o', "");
std::string format = opt.getStringValue ('f', "BINARY");
arrayfile::arrayfilemode_t mode = arrayfile_t::parseModeString (format);
if (opt.getArgc () != 2) {
opt.printUsage ();
exit (0);
}
std::string infile = opt.getArgv (0);
std::string outfile = opt.getArgv (1);
convert_array_file(infile, outfile, mode, verbose);
return 0;
}
void
simple( int argc, char* argv[] )
{
AnyOption *opt = new AnyOption();
opt->noPOSIX(); /* use simpler option type */
opt->setOption( "width" );
opt->setOption( "height" );
opt->setFlag( "convert");
opt->setCommandOption( "name" );
opt->setFileOption( "title" );
if ( ! opt->processFile( "sample.txt" ) )
cout << "Failed processing the resource file" << endl ;
opt->processCommandArgs( argc, argv );
cout << "THE OPTIONS : " << endl << endl ;
if( opt->getValue( "width" ) != NULL )
cout << "width : " << opt->getValue( "width" ) << endl ;
if( opt->getValue( "height" ) != NULL )
cout << "height : " << opt->getValue( "height" ) << endl ;
if( opt->getValue( "name" ) != NULL )
cout << "name : " << opt->getValue( "name" ) << endl ;
if( opt->getValue( "title" ) != NULL )
cout << "title : " << opt->getValue( "title" ) << endl ;
if( opt->getFlag( "convert" ) )
cout << "convert : set " << endl ;
cout << endl ;
cout << "THE ARGUMENTS : " << endl << endl ;
for( int i = 0 ; i < opt->getArgc() ; i++ ){
cout << opt->getArgv( i ) << endl ;
}
cout << endl;
delete opt;
}
int main(int argc, char* argv[])
{
AnyOption opt;
// Usage
opt.addUsage( "Example: " );
opt.addUsage( " cppbitmessage -p 8444" );
opt.addUsage( " " );
opt.addUsage( "Usage: " );
opt.addUsage( "" );
opt.addUsage( " -p --port Port to listen on");
opt.addUsage( " -V --version Show version number");
opt.addUsage( " --help Show help");
opt.addUsage( "" );
opt.setOption( "port", 'p' );
opt.setFlag( "version", 'V' );
opt.setFlag( "help" );
opt.processCommandArgs(argc, argv);
if ((!opt.hasOptions()) || (opt.getFlag( "help" )))
{
// print usage if no options
opt.printUsage();
return 0;
}
if ((opt.getFlag("version")) || (opt.getFlag('V')))
{
std::cout << "Version " << VERSION << std::endl;
return 0;
}
int port = 8444;
if ((opt.getValue("port") != NULL) || (opt.getValue('p')))
{
std::stringstream ss;
ss << opt.getValue("port");
ss >> port;
}
/**
* @brief Read in a list of array and check for each of the arrays whether they are in LMC form or not
* @param argc
* @param argv[]
* @return
*/
int main (int argc, char *argv[]) {
char *fname;
int correct = 0, wrong = 0;
/* parse command line options */
AnyOption opt;
opt.setFlag ("help", 'h'); /* a flag (takes no argument), supporting long and short form */
opt.setOption ("loglevel", 'l');
opt.setOption ("oaconfig", 'c');
opt.setOption ("check");
opt.setOption ("strength", 's');
opt.setOption ("prune", 'p');
opt.setOption ("output", 'o');
opt.setOption ("mode", 'm');
opt.addUsage ("oacheck: Check arrays for LMC form or reduce to LMC form");
opt.addUsage ("Usage: oacheck [OPTIONS] [ARRAYFILE]");
opt.addUsage ("");
opt.addUsage (" -h --help Prints this help");
opt.addUsage (" -l [LEVEL] --loglevel [LEVEL] Set loglevel to number");
opt.addUsage (" -s [STRENGTH] --strength [STRENGTH] Set strength to use in checking");
std::string ss = " --check [MODE] Select mode: ";
ss +=
printfstring ("%d (default: check ), %d (reduce to LMC form), %d (apply random transformation and reduce)",
MODE_CHECK, MODE_REDUCE, MODE_REDUCERANDOM); //
for (int i = 3; i < ncheckopts; ++i)
ss += printfstring (", %d (%s)", static_cast< checkmode_t > (i), modeString ((checkmode_t)i).c_str ());
opt.addUsage (ss.c_str ());
opt.addUsage (" -o [OUTPUTFILE] Output file for LMC reduction");
opt.processCommandArgs (argc, argv);
algorithm_t algmethod = (algorithm_t)opt.getIntValue ("mode", MODE_AUTOSELECT);
int loglevel = NORMAL;
if (opt.getValue ("loglevel") != NULL || opt.getValue ('l') != NULL)
loglevel = atoi (opt.getValue ('l')); // set custom loglevel
setloglevel (loglevel);
if (checkloglevel (QUIET)) {
print_copyright ();
}
if (opt.getFlag ("help") || opt.getFlag ('h') || opt.getArgc () == 0) {
opt.printUsage ();
return 0;
}
checkmode_t mode = MODE_CHECK;
if (opt.getValue ("check") != NULL)
mode = (checkmode_t)atoi (opt.getValue ("check")); // set custom loglevel
if (mode >= ncheckopts)
mode = MODE_CHECK;
logstream (QUIET) << "#time start: " << currenttime () << std::endl;
double t = get_time_ms ();
t = 1e3 * (t - floor (t));
srand (t);
int prune = opt.getIntValue ('p', 0);
fname = opt.getArgv (0);
setloglevel (loglevel);
int strength = opt.getIntValue ('s', 2);
if (strength < 1 || strength > 10) {
printf ("Strength specfied (t=%d) is invalid\n", strength);
exit (1);
} else {
log_print (NORMAL, "Using strength %d to increase speed of checking arrays\n", strength);
}
arraylist_t outputlist;
char *outputfile = 0;
bool writeoutput = false;
if (opt.getValue ("output") != NULL) {
writeoutput = true;
outputfile = opt.getValue ('o');
}
arrayfile_t *afile = new arrayfile_t (fname);
if (!afile->isopen ()) {
printf ("Problem opening %s\n", fname);
exit (1);
}
logstream (NORMAL) << "Check mode: " << mode << " (" << modeString (mode) << ")" << endl;
/* start checking */
double Tstart = get_time_ms (), dt;
int index;
array_link al (afile->nrows, afile->ncols, -1);
for (int i = 0; i < afile->narrays; i++) {
index = afile->read_array (al);
array_t *array = al.array;
arraydata_t arrayclass = arraylink2arraydata (al, 0, strength);
arrayclass.lmc_overflow_check ();
OAextend oaextend;
lmc_t result = LMC_NONSENSE;
LMCreduction_t *reduction = new LMCreduction_t (&arrayclass);
LMCreduction_t *randtest = new LMCreduction_t (&arrayclass);
array_link test_arraylink = al.clone();
array_t *testarray = test_arraylink.array;
randtest->transformation->randomize ();
reduction->setArray ( al);
/* variables needed within the switch statement */
switch (mode) {
case MODE_CHECK:
{
/* LMC test with reduction code */
reduction->mode = OA_TEST;
result = LMCcheck(al, arrayclass, oaextend, *reduction);
break;
}
case MODE_CHECKJ4: {
/* LMC test with special code */
reduction->mode = OA_TEST;
reduction->init_state = COPY;
oaextend.setAlgorithm (MODE_J4, &arrayclass);
result = LMCcheck (al, arrayclass, oaextend, *reduction);
break;
}
case MODE_REDUCEJ4: {
/* LMC test with special code */
reduction->mode = OA_REDUCE;
reduction->setArray (al);
result = LMCcheckj4 (al, arrayclass, *reduction, oaextend);
break;
}
case MODE_CHECK_SYMMETRY: {
myprintf("MODE_CHECK_SYMMETRY not supported any more");
exit(1);
}
case MODE_CHECKJ5X: {
oaextend.setAlgorithm (MODE_J5ORDERX, &arrayclass);
/* LMC test with special code */
reduction->mode = OA_TEST;
reduction->init_state = COPY;
result = LMCcheck (al, arrayclass, oaextend, *reduction);
break;
}
case MODE_CHECKJ5XFAST: {
oaextend.setAlgorithm (MODE_J5ORDERX, &arrayclass);
/* LMC test with special code */
reduction->mode = OA_TEST;
reduction->init_state = COPY;
if (1) {
array_link al (array, arrayclass.N, arrayclass.ncols, al.INDEX_NONE);
reduction->updateSDpointer (al);
}
result = LMCcheck (al, arrayclass, oaextend, *reduction);
break;
}
case MODE_REDUCEJ5X: {
OAextend oaextend;
oaextend.setAlgorithm (MODE_J5ORDERX, &arrayclass);
/* LMC test with special code */
printf ("oacheck: WARNING: MODE_CHECKJ5X: untested code, not complete\n");
reduction->mode = OA_REDUCE;
result = LMCcheck (al, arrayclass, oaextend, *reduction);
break;
}
case MODE_REDUCE:
/* LMC reduction */
{
reduction->mode = OA_REDUCE;
copy_array(array, reduction->array, arrayclass.N, arrayclass.ncols);
dyndata_t dynd = dyndata_t(arrayclass.N);
result = LMCreduction(array, array, &arrayclass, &dynd, reduction, oaextend);
break;
}
case MODE_REDUCERANDOM:
{
/* random LMC reduction */
oaextend.setAlgorithm(MODE_ORIGINAL, &arrayclass);
reduction->mode = OA_REDUCE;
randtest->transformation->apply(array, testarray);
copy_array(testarray, reduction->array, arrayclass.N, arrayclass.ncols);
reduction->init_state = INIT;
array_link alp = arrayclass.create_root(arrayclass.ncols, 1000);
reduction->setArray(alp);
dyndata_t dynd = dyndata_t(arrayclass.N);
result = LMCreduction(testarray, testarray, &arrayclass, &dynd, reduction, oaextend);
if (log_print(NORMAL, "")) {
reduction->transformation->show();
}
} break;
case MODE_REDUCETRAIN:
/* LMC reduction with train*/
reduction->mode = OA_REDUCE;
result = LMCreduction_train (al, &arrayclass, reduction, oaextend);
break;
case MODE_REDUCETRAINRANDOM:
/* random LMC reduction with train*/
reduction->mode = OA_REDUCE;
randtest->transformation->apply (array, testarray);
result = LMCreduction_train (test_arraylink, &arrayclass, reduction, oaextend);
break;
case MODE_HADAMARD:
myprintf("MODE_HADAMARD not supported any more\n");
exit(1);
default:
result = LMC_NONSENSE;
std::cout << "function " << __FUNCTION__ << "line " << __LINE__ << "Unknown mode" << std::endl;
exit (1);
break;
}
bool aequal;
switch (mode) {
case MODE_CHECK:
if (result == LMC_LESS) {
++wrong;
log_print (NORMAL, "Found array nr %i/%i NOT in lmc form:\n", i, afile->narrays);
} else {
++correct;
log_print (NORMAL, "Found array nr %i/%i in lmc form.\n", i, afile->narrays);
}
break;
case MODE_CHECKJ4:
case MODE_CHECKJ5X:
case MODE_CHECKJ5XFAST:
case MODE_CHECK_SYMMETRY:
if (result == LMC_LESS) {
++wrong;
log_print (NORMAL, "Found array nr %i/%i NOT in minimal form:\n", i, afile->narrays);
} else {
++correct;
log_print (NORMAL, "Found array nr %i/%i in minimal form.\n", i, afile->narrays);
}
break;
case MODE_REDUCE:
case MODE_REDUCEJ4:
case MODE_REDUCEJ5X:
case MODE_REDUCETRAIN:
aequal = std::equal (array, array + arrayclass.N * arrayclass.ncols, reduction->array);
if ((!aequal) || reduction->state == REDUCTION_CHANGED) {
++wrong;
log_print (QUIET, "Reduced array %i/%i to lmc form.\n", i, afile->narrays);
if (checkloglevel (NORMAL)) {
log_print (QUIET, "Original:\n");
print_array (array, afile->nrows, afile->ncols);
print_array ("Reduction:\n", reduction->array, afile->nrows, afile->ncols);
printf ("---------------\n");
}
if (checkloglevel (DEBUG)) {
cout << "Transformation: " << endl;
reduction->transformation->show (cout);
rowindex_t row;
colindex_t column;
array_diff (array, reduction->array, arrayclass.N, arrayclass.ncols, row, column);
cout << "Difference at: ";
printf (" row %d, col %d\n", row, column);
}
} else {
++correct;
log_print (QUIET, "Array %i/%i was already in lmc form:\n", i, afile->narrays);
}
break;
case MODE_REDUCETRAINRANDOM:
case MODE_REDUCERANDOM:
case MODE_REDUCEJ4RANDOM:
aequal = std::equal (array, array + arrayclass.N * arrayclass.ncols, reduction->array);
if (!aequal) {
++wrong;
log_print (SYSTEM,
"Array %i/%i: reduced random transformation not equal to original (BUG!)\n",
i, afile->narrays);
if (checkloglevel (NORMAL)) {
print_array ("Original:\n", array, afile->nrows, afile->ncols);
print_array ("Randomized:\n", testarray, afile->nrows, afile->ncols);
print_array ("Reduction:\n", reduction->array, afile->nrows, afile->ncols);
printf ("---------------\n");
}
} else {
++correct;
log_print (QUIET, "Array %i/%i: reduced random transformation to original\n", i,
afile->narrays);
}
break;
case MODE_HADAMARD:
break;
default:
std::cout << "function " << __FUNCTION__ << "line " << __LINE__ << "unknown mode" << std::endl;
break;
}
array_link al = array_link ((carray_t *)reduction->array, afile->nrows, afile->ncols, -1);
if (result == LMC_MORE || !prune) {
outputlist.push_back (al);
}
delete randtest;
delete reduction;
destroy_array (testarray);
}
afile->closefile ();
delete afile;
if (writeoutput) {
logstream (NORMAL) << "Writing output (" << outputlist.size () << " arrays)" << endl;
writearrayfile (outputfile, outputlist);
}
logstream (QUIET) << "#time end: " << currenttime () << std::endl;
return 0;
}
//+----------------------------------------------------------------------------+
//| main() |
//-----------------------------------------------------------------------------+
int
main(int argc, char** argv)
{
common::PathFileString pfs(argv[0]);
//////////////////////////////////////////////////////////////////////////////
// User command line parser
AnyOption *opt = new AnyOption();
opt->autoUsagePrint(true);
opt->addUsage( "" );
opt->addUsage( "Usage: " );
char buff[256];
sprintf(buff, " Example: %s -r example1_noisy.cfg", pfs.getFileName().c_str());
opt->addUsage( buff );
opt->addUsage( " -h --help Prints this help" );
opt->addUsage( " -r --readfile <filename> Reads the polyhedra description file" );
opt->addUsage( " -t --gltopic <topic name> (opt) ROS Topic to send OpenGL commands " );
opt->addUsage( "" );
opt->setFlag( "help", 'h' );
opt->setOption( "readfile", 'r' );
opt->processCommandArgs( argc, argv );
if( opt->getFlag( "help" ) || opt->getFlag( 'h' ) ) {opt->printUsage(); delete opt; return(1);}
std::string gltopic("OpenGLRosComTopic");
if( opt->getValue( 't' ) != NULL || opt->getValue( "gltopic" ) != NULL ) gltopic = opt->getValue( 't' );
std::cerr << "[OpenGL communication topic is set to : \"" << gltopic << "\"]\n";
std::string readfile;
if( opt->getValue( 'r' ) != NULL || opt->getValue( "readfile" ) != NULL )
{
readfile = opt->getValue( 'r' );
std::cerr << "[ World description is read from \"" << readfile << "\"]\n";
}
else{opt->printUsage(); delete opt; return(-1);}
delete opt;
//
//////////////////////////////////////////////////////////////////////////////
//////////////////////////////////////////////////////////////////////////////
// Initialize ROS and OpenGLRosCom node (visualization)
std::cerr << "["<<pfs.getFileName()<<"]:" << "[Initializing ROS]"<< std::endl;
ros::init(argc, argv, pfs.getFileName().c_str());
if(ros::isInitialized())
std::cerr << "["<<pfs.getFileName()<<"]:" << "[Initializing ROS]:[OK]\n"<< std::endl;
else{
std::cerr << "["<<pfs.getFileName()<<"]:" << "[Initializing ROS]:[FAILED]\n"<< std::endl;
return(1);
}
COpenGLRosCom glNode;
glNode.CreateNode(gltopic);
//
//////////////////////////////////////////////////////////////////////////////
//////////////////////////////////////////////////////////////////////////////
// Reading the input file
std::cerr << "Reading the input file..." << std::endl;
ShapeVector shapes;
PoseVector poses;
IDVector ID;
if(ReadPolyhedraConfigFile(readfile, shapes, poses, ID)==false)
{
std::cerr << "["<<pfs.getFileName()<<"]:" << "Error reading file \"" << readfile << "\"\n";
return(-1);
}
std::cerr << "Read " << poses.size() << " poses of " << shapes.size() << " shapes with " << ID.size() << " IDs.\n";
//
//////////////////////////////////////////////////////////////////////////////
//////////////////////////////////////////////////////////////////////////////
// Visualizing the configuration of objects
std::cerr << "Visualizing the configuration of objects..." << std::endl;
for(unsigned int i=0; i<shapes.size(); i++)
{
for(size_t j=0; j<shapes[i].F.size(); j++)
{
glNode.LineWidth(1.0f);
glNode.AddColor3(0.3f, 0.6f, 0.5f);
glNode.AddBegin("LINE_LOOP");
for(size_t k=0; k<shapes[i].F[j].Idx.size(); k++)
{
int idx = shapes[i].F[j].Idx[k];
Eigen::Matrix<Real,3,1> Vt = poses[i]*shapes[i].V[ idx ];
glNode.AddVertex(Vt.x(), Vt.y(), Vt.z());
}
glNode.AddEnd();
}
}
glNode.SendCMDbuffer();
ros::spinOnce();
common::PressEnterToContinue();
//
//////////////////////////////////////////////////////////////////////////////
//////////////////////////////////////////////////////////////////////////////
// Running PROMTS with A* search algorithm
std::cerr << "Running PROMTS with Depth Limited search algorithm..." << std::endl;
promts::ProblemDataStruct pds("Depth-Limited Search");
pds.m_glNodePtr = &glNode;
PoseVector refined_poses(shapes.size());
refinePoses_DLSearch(shapes, poses, ID, refined_poses, pds);
//
//////////////////////////////////////////////////////////////////////////////
return(0);
}
int main (int argc, char *argv[]) {
AnyOption opt;
/* parse command line options */
opt.setFlag ("help", 'h'); /* a flag (takes no argument), supporting long and short form */
opt.setOption ("output", 'o');
opt.setOption ("input", 'I');
opt.setOption ("rand", 'r');
opt.setOption ("verbose", 'v');
opt.setOption ("ii", 'i');
opt.setOption ("jj");
opt.setOption ("xx", 'x');
opt.setOption ("dverbose", 'd');
opt.setOption ("rows");
opt.setOption ("cols");
opt.setOption ("nrestarts");
opt.setOption ("niter");
opt.setOption ("mdebug", 'm');
opt.setOption ("oaconfig", 'c'); /* file that specifies the design */
opt.addUsage ("Orthonal Array: oatest: testing platform");
opt.addUsage ("Usage: oatest [OPTIONS] [FILE]");
opt.addUsage ("");
opt.addUsage (" -h --help Prints this help ");
opt.processCommandArgs (argc, argv);
double t0 = get_time_ms (), dt = 0;
int randvalseed = opt.getIntValue ('r', 1);
int ix = opt.getIntValue ('i', 1);
int r = opt.getIntValue ('r', 1);
int jj = opt.getIntValue ("jj", 5);
int xx = opt.getIntValue ('x', 0);
int niter = opt.getIntValue ("niter", 10);
int verbose = opt.getIntValue ("verbose", 1);
const char *input = opt.getValue ('I');
if (input == 0)
input = "test.oa";
srand (randvalseed);
if (randvalseed == -1) {
randvalseed = time (NULL);
printf ("random seed %d\n", randvalseed);
srand (randvalseed);
}
array_link array = exampleArray(0);
lmc_t lmc_type = LMCcheck(array);
array = array.randomperm();
array.showarray();
array_link reduced_array = reduceLMCform(array);
reduced_array.showarray();
exit(0);
try {
array_link al = exampleArray(r);
al.show();
al.showarray();
std::vector<int> sizes = array2modelmatrix_sizes(al);
display_vector(sizes); myprintf("\n");
MatrixFloat modelmatrix = array2modelmatrix(al, "i", 1);
array_link modelmatrixx = modelmatrix;
modelmatrixx.show();
modelmatrixx.showarray();
modelmatrix = array2modelmatrix(al, "main", 1);
modelmatrixx = modelmatrix;
modelmatrixx.show();
modelmatrixx.showarray();
exit(0);
}
catch (const std::exception &e) {
std::cerr << e.what() << std::endl;
throw;
}
{
array_link al = exampleArray (r);
array_transformation_t tt = reduceOAnauty (al);
array_link alx = tt.apply (al);
exit (0);
}
return 0;
}
/**
* @brief Filter arrays in a file and write filtered arrays to output file
* @param argc Number of command line arguments
* @param argv Command line arguments
* @return
*/
int main (int argc, char *argv[]) {
AnyOption opt;
/* parse command line options */
opt.setFlag ("help", 'h'); /* a flag (takes no argument), supporting long and short form */
opt.setOption ("output", 'o');
opt.setOption ("verbose", 'v');
opt.setOption ("na", 'a');
opt.setOption ("index", 'i');
opt.setOption ("format", 'f');
opt.addUsage ("Orthonal Array Filter: filter arrays");
opt.addUsage ("Usage: oaanalyse [OPTIONS] [INPUTFILE] [VALUESFILE] [THRESHOLD] [OUTPUTFILE]");
opt.addUsage (" The VALUESFILE is a binary file with k*N double values. Here N is the number of arrays");
opt.addUsage (" and k the number of analysis values.");
opt.addUsage ("");
opt.addUsage (" -h --help Prints this help ");
opt.addUsage (" -v --verbose Verbose level (default: 1) ");
opt.addUsage (" -a Number of values in analysis file (default: 1) ");
opt.addUsage (" --index Index of value to compare (default: 0) ");
opt.addUsage (" -f [FORMAT] Output format (default: TEXT, or BINARY; B) ");
opt.processCommandArgs (argc, argv);
print_copyright ();
/* parse options */
if (opt.getFlag ("help") || opt.getFlag ('h') || opt.getArgc () < 4) {
opt.printUsage ();
exit (0);
}
int verbose = opt.getIntValue ('v', 1);
int na = opt.getIntValue ('a', 1);
int index = opt.getIntValue ("index", 0);
std::string format = opt.getStringValue ('f', "BINARY");
arrayfile::arrayfilemode_t mode = arrayfile_t::parseModeString (format);
/* read in the arrays */
std::string infile = opt.getArgv (0);
std::string anafile = opt.getArgv (1);
double threshold = atof (opt.getArgv (2));
std::string outfile = opt.getArgv (3);
if (verbose)
printf ("oafilter: input %s, threshold %f (analysisfile %d values, index %d)\n", infile.c_str (),
threshold, na, index);
arraylist_t *arraylist = new arraylist_t;
int n = readarrayfile (opt.getArgv (0), arraylist);
if (verbose)
printf ("oafilter: filtering %d arrays\n", n);
// read analysis file
FILE *afid = fopen (anafile.c_str (), "rb");
if (afid == 0) {
printf (" could not read analysisfile %s\n", anafile.c_str ());
exit (0);
}
double *a = new double[n * na];
fread (a, sizeof (double), n * na, afid);
fclose (afid);
std::vector< int > gidx;
;
for (int jj = 0; jj < n; jj++) {
double val = a[jj * na + index];
if (val >= threshold)
gidx.push_back (jj);
if (verbose >= 2)
printf ("jj %d: val %f, threshold %f\n", val >= threshold, val, threshold);
}
// filter
arraylist_t *filtered = new arraylist_t;
selectArrays (*arraylist, gidx, *filtered);
/* write arrays to file */
if (verbose)
cout << "Writing " << filtered->size () << " arrays (input " << arraylist->size () << ") to file "
<< outfile << endl;
writearrayfile (outfile.c_str (), *filtered, mode);
/* free allocated structures */
delete[] a;
delete arraylist;
delete filtered;
return 0;
}
AnyOption *parseInputOptions( int argc, char **argv ) {
// parse input options
AnyOption *opt = new AnyOption();
opt->addUsage( "----------------------------------------------------------------------------" );
opt->addUsage( "| NCPA Infrasound |" );
opt->addUsage( "| Normal Modes Broadband |" );
opt->addUsage( "| Based on either: Effective Sound Speed Approximation - see ModESS |" );
opt->addUsage( "| Wide_Angle High-Mach code - see WMod |" );
opt->addUsage( "----------------------------------------------------------------------------" );
opt->addUsage( "Usage: " );
opt->addUsage( "" );
opt->addUsage( "The options below can be specified in a colon-separated file \"ModBB.options\"");
opt->addUsage( "or at the command line. Command-line options override file options." );
opt->addUsage( "Be sure to precede all options with two minuses (--)." );
opt->addUsage( " --help -h Print this message and exit" );
opt->addUsage( "" );
opt->addUsage( "One of two algorithms can be used to perform pulse propagation." );
opt->addUsage( "The first is based on the Effective Sound Speed Approximation (as in ModESS);" );
opt->addUsage( "the second is based on the the Wide_Angle High-Mach solution ");
opt->addUsage( "of the wave equation (see implementation in WMod)." );
opt->addUsage( "ModESS is faster but it is accurate for (launch) angles less than 30 deg and" );
opt->addUsage( "low wind speeds. WMod extends the validity to higher angles" );
opt->addUsage( "and high Mach numbers but it runs slower." );
opt->addUsage( "Options --use_modess and --use_wmod allow the user to choose");
opt->addUsage( "the desired algorithm when computing the dispersion data (see step 1 below)." );
opt->addUsage( "" );
opt->addUsage( "To propagate a pulse, 2 steps must be completed:");
opt->addUsage( " 1. A dispersion file must be available or computed" );
opt->addUsage( " using the option --out_disp_src2rcv_file ." );
// opt->addUsage( " use either option --out_dispersion_files or --out_disp_src2rcv_file" );
opt->addUsage( " 2. Perform pulse propagation for one of several scenarios:");
opt->addUsage( " a. source-to-receiver at one range (option --pulse_prop_src2rcv)");
opt->addUsage( " b. source-to-receiver at several equally spaced ranges " );
opt->addUsage( " (option --pulse_prop_src2rcv_grid)");
// opt->addUsage( " c. computing the whole 2D pressure field " );
// opt->addUsage( " (most expensive - option --pulse_prop_grid)" );
opt->addUsage( " The source type can be one of the following:" );
opt->addUsage( " delta function -> see option --get_impulse_resp" );
opt->addUsage( " built-in pulse choice 1 -> see option --use_builtin_pulse1" );
opt->addUsage( " built-in pulse choice 2 -> see option --use_builtin_pulse2" );
opt->addUsage( " user-provided spectrum file -> see option --src_spectrum_file" );
opt->addUsage( " user-provided waveform file -> see option --src_waveform_file" );
opt->addUsage( "" );
// opt->addUsage( "To compute a dispersion file: one of the following 2 options is REQUIRED:" );
opt->addUsage( "To compute a dispersion file: the following option is REQUIRED:" );
opt->addUsage( " --out_disp_src2rcv_file <dispersion filename>");
opt->addUsage( " Output dispersion curves and modal values for" );
opt->addUsage( " source-to-receiver propagation to the specified file." );
// opt->addUsage( " --out_dispersion_files <dispersion filename stub>");
// opt->addUsage( " Output dispersion curves and modal values on a 2D grid" );
// opt->addUsage( " to binary files at each frequency. The resulting filenames" );
// opt->addUsage( " have the stub and frequency appended: " );
// opt->addUsage( " e.g. <stub><freq>_nm.bin." );
// opt->addUsage( " This option is computationally expensive." );
opt->addUsage( "" );
// opt->addUsage( " Examples (run in the 'samples' directory):" );
// opt->addUsage( "" );
// opt->addUsage( " a. Compute dispersion file that will be used to compute the pressure pulse at 1 receiver. Assume that we want to end up with a pulse having a spectrum with a maximum frequency of f_max=0.5 Hz. Also assume that we want the pulse represented on a time record of T=512 seconds. The number of positive frequencies necessary for the calculation is T*f_max = 256 i.e.256 frequencies between 0 and 0.5 Hz. Thus we know f_max=0.5 Hz and f_step=f_max/256=0.001953125 Hz. The corresponding run command is:" );
opt->addUsage( " Example (run in the 'samples' directory):" );
opt->addUsage( "" );
opt->addUsage( " Example to obtain a dispersion file that will be used to compute" );
opt->addUsage( " the propagated pressure pulse at a distant receiver. " );
opt->addUsage( " Assume that we want to end up with a pulse having a spectrum" );
opt->addUsage( " with a maximum frequency of f_max=0.5 Hz. " );
opt->addUsage( " Also assume that we want the pulse represented on a time record " );
opt->addUsage( " of T=512 seconds. The number of positive frequencies necessary " );
opt->addUsage( " for the calculation is T*f_max = 256 i.e.256 frequencies " );
opt->addUsage( " between f_min=f_step and 0.5 Hz. The step in frequency is " );
opt->addUsage( " f_step=f_max/256=0.001953125 Hz." );
opt->addUsage( " The corresponding run command is:" );
opt->addUsage( "" );
opt->addUsage( " >> ../bin/ModBB --out_disp_src2rcv_file myDispersionFile.dat " );
opt->addUsage( " --atmosfile NCPA_canonical_profile_zuvwtdp.dat --atmosfileorder zuvwtdp " );
opt->addUsage( " --skiplines 0 --azimuth 90 --f_step 0.001953125 --f_max 0.5 --use_modess" );
opt->addUsage( "" );
opt->addUsage( " Each line in this dispersion file has (4 + 4*n_modes) entries" );
opt->addUsage( " in the following format:" );
opt->addUsage( " freq n_modes rho_src rho_rcv Re(k_pert_m) Im(k_pert_m) V_m(z_src) V_m(z_rcv)" );
opt->addUsage( " where m varies from 1 to n_modes. k_pert_m, and V_m are" );
opt->addUsage( " the m_th wavenumber and mode amplitude respectively." );
opt->addUsage( " z_src and z_rcv stand for source and receiver height respectively." );
opt->addUsage( "" );
// opt->addUsage( " b. Compute dispersion files for propagation to all receivers on a 2D grid: for 256 frequencies from 0 to 0.5 Hz in steps of 0.5/256 Hz:" );
// opt->addUsage( "" );
// opt->addUsage( " >> ../bin/ModBB --out_dispersion_files disprs --atmosfile NCPA_canonical_profile_zuvwtdp.dat --atmosfileorder zuvwtdp --skiplines 0 --azimuth 90 --f_step 0.001953125 --f_max 0.5 --use_modess" );
opt->addUsage( "" );
opt->addUsage( "In addition the following options are REQUIRED:" );
opt->addUsage( " --use_modess Prompts the use of ModESS algorithm." );
opt->addUsage( " --use_wmod Prompts the use of WMod algorithm." );
opt->addUsage( " Note that --use_modess and --use_wmod are mutually exclusive." );
opt->addUsage( " --atmosfile <filename> Uses an ASCII atmosphere file" );
opt->addUsage( " referenced to Mean Sea Level (MSL)." );
opt->addUsage( " --atmosfileorder The order of the (z,t,u,v,w,p,d) fields in " );
opt->addUsage( " the ASCII file (Ex: 'ztuvpd')" );
opt->addUsage( " --skiplines Lines at the beginning of the ASCII file to skip" );
opt->addUsage( " --azimuth Value in range [0,360), clockwise from North" );
opt->addUsage( " --f_step The frequency step" );
opt->addUsage( " --f_max Maximum frequency to propagate" );
opt->addUsage( " Note that in this case the array of frequencies is [f_step:f_step:f_max]." );
opt->addUsage( "" );
opt->addUsage( "OPTIONAL [defaults]:" );
opt->addUsage( " --f_min Minimum frequency [f_step Hz] " );
opt->addUsage( " --maxheight_km Calculation grid height in km above MSL [150 km]" );
opt->addUsage( " --zground_km Height of the ground level above MSL [0 km]" );
opt->addUsage( " --Nz_grid Number of points on the z-grid from the ground" );
opt->addUsage( " to maxheight [20000]" );
opt->addUsage( " --sourceheight_km Source height in km Above Ground Level (AGL) [0]" );
opt->addUsage( " --receiverheight_km Receiver height in km AGL [0]" );
opt->addUsage( " --maxrange_km Maximum horizontal distance from origin to propagate" );
opt->addUsage( " [1000 km]" );
opt->addUsage( " --ground_impedance_model Name of the ground impedance models to be employed:" );
opt->addUsage( " [rigid], TBD" );
opt->addUsage( " --Lamb_wave_BC For a rigid ground: if ==1 it sets" );
opt->addUsage( " admittance= = -1/2*dln(rho)/dz; [ 0 ]" );
opt->addUsage( " --wind_units Use it to specify 'kmpersec' if the winds are given" );
opt->addUsage( " in km/s [ mpersec ]" );
opt->addUsage( " --use_attn_file Option to specify a file name containing" );
opt->addUsage( " user-provided attenuation coefficients " );
opt->addUsage( " to be loaded instead of the default" );
opt->addUsage( " Sutherland-Bass attenuation. " );
opt->addUsage( " The text file should contain two columns: " );
opt->addUsage( " height (km AGL) and " );
opt->addUsage( " attenuation coefficients in np/m." );
opt->addUsage( " --c_min Specify the minimum phase speed (in m/sec)." );
opt->addUsage( " This is used in conjunction with the --wvnum_filter" );
opt->addUsage( " flag which turns on wavenumber filtering by" );
opt->addUsage( " phase speed. See also the --wvnum_filter flag" );
opt->addUsage( " and the --c_max option." );
opt->addUsage( " --c_max Specify the maximum phase speed (in m/sec)." );
opt->addUsage( "" );
opt->addUsage( "FLAGS (no value required after the flag itself):" );
opt->addUsage( " --turnoff_WKB Turn off the WKB least phase speed estimation," );
opt->addUsage( " an approximation that speeds-up ground-to-ground" );
opt->addUsage( " propagation. If either or both the source and " );
opt->addUsage( " receiver are not on the ground [height=0] " );
opt->addUsage( " the approximation is turned off by default" );
opt->addUsage( " regardless whether the flag is mentioned" );
opt->addUsage( " in the command line or not." );
opt->addUsage( " --use_zero_attn Set attenuation to zero.");
opt->addUsage( " Reads the dispersion file and sets the");
opt->addUsage( " imaginary part of the wavenumber to zero.");
opt->addUsage( " --wvnum_filter Applies wavenumber filtering by phase speed" );
opt->addUsage( " and should be followed by specification of" );
opt->addUsage( " the parameters:" );
opt->addUsage( " --c_min minimum phase speed (in m/sec)." );
opt->addUsage( " --c_max maximum phase speed (in m/sec)." );
opt->addUsage( "" );
opt->addUsage( "" );
opt->addUsage( "Options for PULSE PROPAGATION:" );
opt->addUsage( " --pulse_prop_src2rcv <dispersion filename> ");
opt->addUsage( " Propagate pulse from source to 1 receiver");
opt->addUsage( " at a distance specified by option --range_R_km; " );
opt->addUsage( " --range_R_km Propagate pulse to this range [km]" );
opt->addUsage( " --waveform_out_file <waveform filename> Name of the waveform output file" );
opt->addUsage( "" );
opt->addUsage( " --pulse_prop_src2rcv_grid <dispersion filename> ");
opt->addUsage( " Propagate pulse from source to array of ");
opt->addUsage( " horizontally equally-spaced receivers" );
opt->addUsage( "" );
opt->addUsage( " REQUIRED additional options:" );
opt->addUsage( " --f_center The center frequency of the built-in pulse choices 1 and 2" );
opt->addUsage( " (f_center<=f_max/5)" );
opt->addUsage( " --R_start_km Propagation from this range to R_end_km in DR_km steps." );
opt->addUsage( " --R_end_km Pulse is propagated from R_start_km to this range." );
opt->addUsage( " --DR_km Range step to propagate from R_start_km to R_end_km." );
opt->addUsage( " --waveform_out_file <waveform filename> ");
opt->addUsage( " Name of the waveform output file." );
opt->addUsage( "" );
opt->addUsage( " OPTIONAL [defaults]:" );
opt->addUsage( " --max_celerity Maximum celerity [340 m/s]." );
opt->addUsage( " --nfft Number of points used in the FFT computation. ");
opt->addUsage( " Defaults to [4*f_max/f_step]." );
opt->addUsage( "" );
opt->addUsage( "" );
opt->addUsage( "SOURCE TYPE input options: Use one of the following 4 options" );
opt->addUsage( " to specify the source type:" );
opt->addUsage( " --get_impulse_resp Flag to use a delta function as source and" );
opt->addUsage( " to output the impulse response." );
opt->addUsage( " --use_builtin_pulse1 Flag to request the use of the built-in source pulse." );
opt->addUsage( " Note: Use --f_center to request the central frequency" );
opt->addUsage( " of the pulse. f_center is restricted to a maximum" );
opt->addUsage( " value of fmax/5 where fmax is the maximum frequency" );
opt->addUsage( " defined by the dispersion file." );
opt->addUsage( " The input waveform and spectrum are also saved for the" );
opt->addUsage( " user's reference such that:" );
opt->addUsage( " The built-in source spectrum is outputted in the file." );
opt->addUsage( " 'source_spectrum_input.dat' with the format." );
opt->addUsage( " | Freq (Hz) | Re(S) | Imag(S) |." );
opt->addUsage( " The input source waveform is outputted in the file." );
opt->addUsage( " 'source_waveform_input.dat' with the format." );
opt->addUsage( " | Time [s] | Amplitude |." );
opt->addUsage( " --use_builtin_pulse2 Flag to request a second shape of built-in source pulse." );
opt->addUsage( " The input waveform and spectrum are also saved for the" );
opt->addUsage( " user's reference such that:" );
opt->addUsage( " The built-in source spectrum is outputted in the file." );
opt->addUsage( " 'source_spectrum_input.dat' with the format." );
opt->addUsage( " | Freq (Hz) | Re(S) | Imag(S) |." );
opt->addUsage( " The input source waveform is outputted in the file." );
opt->addUsage( " 'source_waveform_input.dat' with the format." );
opt->addUsage( " | Time [s] | Amplitude |." );
opt->addUsage( " --src_spectrum_file Specify the file name of the source spectrum");
opt->addUsage( " at positive frequencies. The file must have 3 columns" );
opt->addUsage( " | Freq | Real(Spectrum) | Imag(Spectrum) |" );
opt->addUsage( " Note that the frequencies provided in the file" );
opt->addUsage( " must match the frequencies in the dispersion file." );
opt->addUsage( " --src_waveform_file Specify the file name of the user-provided " );
opt->addUsage( " source waveform. The file must have 2 columns" );
opt->addUsage( " |Time | Amplitude |" );
opt->addUsage( " If none of then source type options are specified the delta function source");
opt->addUsage( " is the default i.e. the output is the impulse response." );
opt->addUsage( "" );
opt->addUsage( " Example: Pulse propagation to a point on the ground at range_R_km" );
opt->addUsage( " and output the impulse response:" );
opt->addUsage( "" );
opt->addUsage( " ../bin/ModBB --pulse_prop_src2rcv myDispersionFile.dat --range_R_km 240 " );
opt->addUsage( " --waveform_out_file mywavf.dat --get_impulse_resp" );
opt->addUsage( "" );
opt->addUsage( " Example: Pulse propagation to a point on the ground at range_R_km" );
opt->addUsage( " and employ the user-provided source spectrum:" );
opt->addUsage( "" );
opt->addUsage( " ../bin/ModBB --pulse_prop_src2rcv myDispersionFile.dat --range_R_km 240 " );
opt->addUsage( " --waveform_out_file mywavf.dat --max_celerity 300 " );
opt->addUsage( " --src_spectrum_file source_spectrum_example.dat" );
opt->addUsage( "" );
opt->addUsage( " Example: Pulse propagation to several points on the ground 20 km apart" );
opt->addUsage( " and employ the user-provided source waveform:" );
opt->addUsage( "" );
opt->addUsage( " ../bin/ModBB --pulse_prop_src2rcv_grid myDispersionFile.dat " );
opt->addUsage( " --R_start_km 240 --DR_km 20 --R_end_km 300 --waveform_out_file mywavf.dat " );
opt->addUsage( " --src_waveform_file source_waveform_input_example.dat" );
opt->addUsage( "" );
opt->addUsage( "" );
/*
// This functionality works but was disabled because of too long computation times.
opt->addUsage( " To compute a 2D field:" );
opt->addUsage( " --pulse_prop_grid <dispersion directory name> ");
opt->addUsage( " Compute/view pulse on the 2D spatial x-z grid of 'height_km'");
opt->addUsage( " and 'width_km' starting at 'R_start_km" );
opt->addUsage( "" );
opt->addUsage( " --------------------------------------------------------------" );
opt->addUsage( " height_km | |" );
opt->addUsage( " | Pressure field computed within |" );
opt->addUsage( " | a 2D (width_km x height_km) grid |" );
opt->addUsage( " | 'ntsteps' times |" );
opt->addUsage( " | every 'tmstep' seconds |" );
opt->addUsage( " | |" );
opt->addUsage( " | |" );
opt->addUsage( " -------------x------------------------------------------------" );
opt->addUsage( " R_start_km" );
opt->addUsage( "" );
opt->addUsage(" Additional parameters:" );
opt->addUsage( " --R_start_km The grid (viewing window) starts at R_start_km" );
opt->addUsage( " --width_km Grid width" );
opt->addUsage( " --max_celerity Reference speed [m/s]; in conjunction with R_start_km");
opt->addUsage( " it is determining where inside the grid the field is at");
opt->addUsage( " a time step; a value smaller than the speed of sound");
opt->addUsage( " at the ground is suggested." );
opt->addUsage( " --tmstep 2D pressure field is calculated at this specified time step." );
opt->addUsage( " --ntsteps Number of times the 2D pressure field is calculated");
opt->addUsage( " 'tmstep' seconds apart." );
opt->addUsage( "" );
opt->addUsage( " OPTIONAL [defaults]:" );
opt->addUsage( " --height_km The height of the 2D grid. [maximum height]" );
opt->addUsage( " --frame_file_stub Each 2D grid is saved into a file with the name");
opt->addUsage( " frame_file_stub_<time_of_start>; Default:[Pressure2D]." );
opt->addUsage( "" );
opt->addUsage( " Example: >> ../bin/ModBB --pulse_prop_grid mydispersionFolder --R_start_km 220 --width_km 50 --height_km 25 --max_celerity 300 --tmstep 30 --ntsteps 5 --frame_file_stub myPressure --use_builtin_pulse" );
opt->addUsage( "" );
*/
// Set up the actual flags, etc.
opt->setFlag( "help", 'h' );
opt->setFlag( "use_modess" );
opt->setFlag( "use_wmod" );
opt->setFlag( "get_impulse_resp" );
opt->setFlag( "use_builtin_pulse1" );
opt->setFlag( "use_builtin_pulse2" );
opt->setFlag( "turnoff_WKB");
opt->setFlag( "plot");
opt->setFlag( "use_zero_attn");
opt->setFlag( "wvnum_filter");
opt->setOption( "atmosfile" );
opt->setOption( "atmosfileorder" );
opt->setOption( "wind_units" );
opt->setOption( "skiplines" );
opt->setOption( "azimuth" );
opt->setOption( "maxrange_km" );
opt->setOption( "sourceheight_km" );
opt->setOption( "receiverheight_km" );
opt->setOption( "maxheight_km" );
opt->setOption( "zground_km" );
opt->setOption( "stepsize" );
opt->setOption( "Nz_grid" );
opt->setOption( "Nrng_steps" );
opt->setOption( "out_TL_2D" );
opt->setOption( "ground_impedance_model" );
opt->setOption( "Lamb_wave_BC" );
opt->setOption( "f_min" );
opt->setOption( "f_step" );
opt->setOption( "f_max" );
opt->setOption( "f_center" );
opt->setOption( "pulse_prop_grid" );
opt->setOption( "pulse_prop_src2rcv" );
opt->setOption( "pulse_prop_src2rcv_grid" );
opt->setOption( "R_start_km" );
opt->setOption( "R_end_km" );
opt->setOption( "DR_km" );
opt->setOption( "max_celerity" );
opt->setOption( "range_R_km" );
opt->setOption( "out_dispersion_files" );
opt->setOption( "out_disp_src2rcv_file" );
opt->setOption( "waveform_out_file" );
opt->setOption( "width_km" );
opt->setOption( "height_km" );
opt->setOption( "tmstep" );
opt->setOption( "ntsteps" );
opt->setOption( "frame_file_stub" );
opt->setOption( "disp_dirname" );
opt->setOption( "src_spectrum_file" );
opt->setOption( "src_waveform_file" );
opt->setOption( "nfft" );
opt->setOption( "use_attn_file" );
opt->setOption( "c_min" );
opt->setOption( "c_max" );
// Process the command-line arguments
opt->processFile( "./ModBB.options" );
opt->processCommandArgs( argc, argv );
if( ! opt->hasOptions()) { // print usage if no options
opt->printUsage();
delete opt;
exit( 1 );
}
// Check to see if help text was requested
if ( opt->getFlag( "help" ) || opt->getFlag( 'h' ) ) {
opt->printUsage();
exit( 1 );
}
return opt;
}
//
// Function to parse the input options (both command lines and in the options file ModessRD.options)
//
AnyOption *parseInputOptions( int argc, char **argv ) {
// parse input options
AnyOption *opt = new AnyOption();
opt->addUsage( "----------------------------------------------------------------------------" );
opt->addUsage( "| NCPA Infrasound |" );
opt->addUsage( "| Normal Modes for Range-Dependent Environments |" );
opt->addUsage( "| Two-Way Coupled Mode Solution |" );
opt->addUsage( "| Single Frequency: Effective Sound Speed Approximation |" );
opt->addUsage( "----------------------------------------------------------------------------" );
opt->addUsage( "Usage: " );
opt->addUsage( "By default the program computes the 1D transmission loss (TL)" );
opt->addUsage( "at the ground or the specified receiver height and saves the data to 2 files:" );
opt->addUsage( " file tloss_rd2wcm_1d.nm - considering attenuation in the atmosphere" );
opt->addUsage( " file tloss_rd2wcm_1d.lossless.nm - no attenuation" );
opt->addUsage( "Additionally, if the flag --write_2D_TLoss is present on the command line the 2D TL is saved to file tloss_rd_2d.nm" );
opt->addUsage( "The options below can be specified in a colon-separated file \"Modess.options\" or at the command line. Command-line options override file options." );
opt->addUsage( " --help -h Print this message and exit" );
opt->addUsage( "" );
opt->addUsage( " The atmosphere can be specified from one of 2 different sources:");
opt->addUsage( " 1. An .env file containing the atmospheric specifications at certain ranges:" );
opt->addUsage( " use option --g2senvfile <filename>" );
opt->addUsage( " 2. Several ASCII files stored in a given directory:" );
opt->addUsage( " use option --use_1D_profiles_from_dir <mydirname>" );
//opt->addUsage( "The program requires an .env file containing the atmospheric specifications at certain ranges" );
opt->addUsage( "The following options apply:" );
opt->addUsage( "" );
opt->addUsage( "REQUIRED (no default values):" );
//opt->addUsage( " --atmosfile <filename> Uses an ASCII atmosphere file" );
opt->addUsage( " --g2senvfile <filename> Uses an .env binary file containing multiple 1D profiles" );
opt->addUsage( " --atmosfileorder The order of the (z,t,u,v,w,p,d) fields in the ASCII file (Ex: 'ztuvpd')" );
opt->addUsage( " --skiplines Lines at the beginning of the ASCII file to skip" );
opt->addUsage( " --azimuth Degrees in range [0,360), clockwise from North" );
opt->addUsage( " --freq Frequency [Hz]" );
opt->addUsage( "" );
opt->addUsage( "OPTIONAL [defaults]:" );
opt->addUsage( " --maxheight_km Calculation grid height in km above MSL [150 km]" );
opt->addUsage( " --zground_km Height of the ground level above MSL [0 km]" );
opt->addUsage( " --Nz_grid Number of points on the z-grid from ground to maxheight [20000]" );
opt->addUsage( " --sourceheight_km Source height in km Above Ground Level (AGL) [0]" );
opt->addUsage( " --receiverheight_km Receiver height in km AGL [0]" );
opt->addUsage( " --maxrange_km Maximum horizontal distance from origin to propagate [1000 km]" );
opt->addUsage( " --Nrng_steps Number of range steps to propagate [1000]" );
opt->addUsage( " --ground_impedance_model Name of the ground impedance models to be employed:" );
opt->addUsage( " [rigid], others TBD" );
opt->addUsage( " --Lamb_wave_BC If ==1 it sets admittance = -1/2*dln(rho)/dz; [ 0 ]" );
opt->addUsage( " --wind_units Use it to specify 'kmpersec' if the winds are given in km/s [mpersec]" );
opt->addUsage( " --use_attn_file Use it to specify a file name containing user-provided" );
opt->addUsage( " attenuation coefficients to be loaded instead of " );
opt->addUsage( " the default Sutherland-Bass attenuation. " );
opt->addUsage( " The text file should contain two columns: " );
opt->addUsage( " height (km AGL) and " );
opt->addUsage( " attenuation coefficients in np/m." );
opt->addUsage( "" );
opt->addUsage( " --use_profile_ranges_km" );
opt->addUsage( " e.g. --use_profile_ranges_km 0_20_50_80.5_300 " );
opt->addUsage( " The profiles at certain ranges specified by numbers" );
opt->addUsage( " (in km) in a string such as 0_20_50_80.5_300 are");
opt->addUsage( " requested in the propagation. Note that underscores" );
opt->addUsage( " are necessary to separate the numbers." );
opt->addUsage( " Note also that these are requested ranges;" );
opt->addUsage( " however the left-closest profile available" );
opt->addUsage( " in the .env file will actually be used; " );
opt->addUsage( " for instance we request the profile at 300 km " );
opt->addUsage( " but in the .env file the left-closest profile" );
opt->addUsage( " may be available at 290 km and it is the one used." );
opt->addUsage( " Example: >> ../bin/ModessRD2WCM --atmosfile g2sgcp2011012606L.jordan.env ");
opt->addUsage( " --atmosfileorder zuvwtdp --azimuth 90 --freq 0.01 ");
opt->addUsage( " --use_profiles_ranges_km 100_200_250 --maxrange_km 500 ");
opt->addUsage( "" );
opt->addUsage( " --use_profiles_at_steps_km" );
opt->addUsage( " e.g. --use_profiles_at_steps_km 100" );
opt->addUsage( " The profiles are requested at equidistant intervals " );
opt->addUsage( " specified by this option [1000]" );
opt->addUsage( "" );
opt->addUsage( " --use_1D_profiles_from_dir" );
opt->addUsage( " e.g. --use_1D_profiles_from_dir myprofiles" );
opt->addUsage( " This option allows to use the ascii profiles stored in" );
opt->addUsage( " the specified directory. The profiles must have names" );
opt->addUsage( " 'profiles0001', 'profiles0002', etc. and will be" );
opt->addUsage( " used in alphabetical order at the provided ranges" );
opt->addUsage( " e.g. in conjunction with either" );
opt->addUsage( " option '--use_profile_ranges_km' " );
opt->addUsage( " or option '--use_profiles_at_steps_km'" );
opt->addUsage( " If there are more requested ranges than existing" );
opt->addUsage( " profiles then the last profile is used repeatedly" );
opt->addUsage( " as necessary." );
opt->addUsage( " Example: >> ../bin/ModessRD2WCM --atmosfileorder zuvwtdp --skiplines 1" );
opt->addUsage( " --azimuth 90 --freq 0.1 --use_1D_profiles_from_dir myprofiles" );
opt->addUsage( " --use_profile_ranges_km 0_100_300_500 " );
opt->addUsage( "" );
opt->addUsage( "FLAGS (no value required):" );
opt->addUsage( " --write_2D_TLoss Outputs the 2D transmission loss to" );
opt->addUsage( " default file: tloss_rd2wcm_2d.nm" );
opt->addUsage( "" );
opt->addUsage( "" );
opt->addUsage( " The format of the output files are as follows (column order):" );
opt->addUsage( " tloss_rd2wcm_1d.nm: r, 4*PI*Re(P), 4*PI*Im(P), (incoherent TL)" );
opt->addUsage( " tloss_rd2wcm_1d.lossless.nm:" );
opt->addUsage( " tloss_rd2wcm_2d.nm: r, z, 4*PI*Re(P), 4*PI*Im(P)" );
opt->addUsage( "" );
opt->addUsage( " Examples to run (in the 'samples' directory):" );
opt->addUsage( "" );
opt->addUsage( " ../bin/ModessRD2WCM --use_1D_profiles_from_dir profiles --atmosfileorder zuvwtdp --skiplines 1 --azimuth 90 --freq 0.1 --use_profile_ranges_km 0_100_200_300 --maxrange_km 500" );
opt->addUsage( "" );
opt->addUsage( " ../bin/ModessRD2WCM --g2senvfile g2sgcp2011012606L.jordan.env --atmosfileorder zuvwtdp --skiplines 1 --azimuth 90 --freq 0.1 --use_profile_ranges_km 0_100_200_250 --maxrange_km 500" );
opt->addUsage( "" );
opt->addUsage( " ../bin/ModessRD2WCM --use_1D_profiles_from_dir profiles --atmosfileorder zuvwtdp --skiplines 1 --azimuth 90 --freq 0.1 --maxrange_km 500" );
opt->addUsage( "" );
opt->addUsage( " Note: if options --use_profile_ranges_km/--use_profiles_at_steps_km are not used then we fall back on the range-independent case using the first available atm. profile." );
opt->addUsage( "" );
// Set up the actual flags, etc.
opt->setFlag( "help", 'h' );
opt->setFlag( "write_2D_TLoss" );
opt->setFlag( "plot" );
opt->setOption( "atmosfile" );
opt->setOption( "atmosfileorder" );
opt->setOption( "g2senvfile" );
opt->setOption( "wind_units" );
opt->setOption( "use_1D_profiles_from_dir" );
opt->setOption( "slicefile" );
opt->setOption( "skiplines" );
opt->setOption( "azimuth" );
opt->setOption( "freq" );
opt->setOption( "maxrange_km" );
opt->setOption( "sourceheight_km" );
opt->setOption( "receiverheight_km" );
opt->setOption( "maxheight_km" );
opt->setOption( "zground_km" );
opt->setOption( "stepsize" );
opt->setOption( "Nz_grid" );
opt->setOption( "Nrng_steps" );
opt->setOption( "ground_impedance_model" );
opt->setOption( "Lamb_wave_BC" );
opt->setOption( "use_profile_ranges_km" );
opt->setOption( "use_profiles_at_steps_km" );
opt->setOption( "use_attn_file" );
// Process the command-line arguments
opt->processFile( "./ModessRD2WCM.options" );
opt->processCommandArgs( argc, argv );
if( ! opt->hasOptions()) { // print usage if no options
opt->printUsage();
delete opt;
exit( 1 );
}
// Check to see if help text was requested
if ( opt->getFlag( "help" ) || opt->getFlag( 'h' ) ) {
opt->printUsage();
exit( 1 );
}
return opt;
}
void
detailed( int argc, char* argv[] )
{
/* 1. CREATE AN OBJECT */
AnyOption *opt = new AnyOption();
/* 2. SET PREFERENCES */
//opt->noPOSIX(); /* do not check for POSIX style character options */
//opt->setVerbose(); /* print warnings about unknown options */
//opt->noUsage(); /* stop printing Usage */
/* 3. SET THE USAGE/HELP */
opt->addUsage( "Usage: foo [OPTIONS]... [IMAGE FOLDER] " );
opt->addUsage( "Unknown options/arguments encountered " );
opt->addUsage( "Use -h or --help for a complete list of options" );
/* 4. SET THE OPTION STRINGS/CHARACTERS */
opt->setFlag( "help", 'h' ); /* for help */
opt->setOption( "width", 'w' );
opt->setOption( "height" );
opt->setFlag( "convert");
opt->setCommandOption( "name", 'n' );
opt->setCommandFlag( "help" );
opt->setFileOption( "title" );
/* 5. PROVIDE THE COMMANDLINE AND RESOURCE FILE */
if ( ! opt->processFile( "sample.txt" ) )
cout << "Failed processing the resource file" << endl ;
opt->processCommandArgs( argc, argv );
/* 6. GET THE VALUES */
/* help */
if( opt->getFlag( "help" ) || opt->getFlag( 'h' ) ){
opt->printUsage();
/* print help here */
}
cout << "THE OPTIONS : " << endl << endl ;
if( opt->getValue( 'w' ) != NULL )
cout << "w : " << opt->getValue( 'w' ) << endl ;
if( opt->getValue( "width" ) != NULL )
cout << "width : " << opt->getValue( "width" ) << endl ;
if( opt->getValue( "height" ) != NULL )
cout << "height : " << opt->getValue( "height" ) << endl ;
if( opt->getValue( "name" ) != NULL )
cout << "name : " << opt->getValue( "name" ) << endl ;
if( opt->getValue( 'n' ) != NULL )
cout << "n : " << opt->getValue( 'n' ) << endl ;
if( opt->getValue( "title" ) != NULL )
cout << "title : " << opt->getValue( "title" ) << endl ;
if( opt->getFlag( "convert" ) )
cout << "convert : set " << endl ;
cout << endl ;
/* 7. GET THE ACTUAL ARGUMNETS AFTER THE OPTIONS */
cout << "THE ARGUMENTS : " << endl << endl ;
for( int i = 0 ; i < opt->getArgc() ; i++ ){
cout << opt->getArgv( i ) << endl ;
}
cout << endl;
/* 7. DONE */
delete opt;
}
int main(int argc, char** argv)
{
QApplication app(argc, argv);
AnyOption options;
options.addUsage(QString("Usage: %1 --help | --console | [--output path --prefix prefixName --suffix suffixName --type typeName").arg(argv[0]).toAscii());
options.addUsage("");
options.addUsage("--help Displays this message.");
options.addUsage("--console Run the gui version.");
options.addUsage("--output [path] Output directory for the plugin skeleton.");
options.addUsage("--prefix [prefixName] Prefix to use for the plugin.");
options.addUsage("--suffix [suffixName] Suffix to use for the plugin.");
options.addUsage("--type [typeName] Type to use for the plugin.");
options.addUsage("--quiet Process quietly (non gui generation only).");
options.setFlag("help");
options.setFlag("console");
options.setOption("output");
options.setOption("prefix");
options.setOption("suffix");
options.setOption("type");
options.setOption("quiet");
options.processCommandArgs(argc, argv);
if(options.getFlag("help")) {
options.printUsage();
return 0;
}
if(options.getFlag("console")) {
bool paramsOk = options.getValue("output") && options.getValue("prefix") && options.getValue("type") && options.getValue("suffix");
if( !paramsOk ) {
options.printUsage();
return 1;
}
if(!options.getFlag("quiet")) {
qDebug() << "output = " << options.getValue("output");
qDebug() << "prefix = " << options.getValue("prefix");
qDebug() << "suffix = " << options.getValue("suffix");
qDebug() << "type = " << options.getValue("type");
}
dtkPluginGenerator generator;
generator.setOutputDirectory(options.getValue("output"));
generator.setPrefix(options.getValue("prefix"));
generator.setSuffix(options.getValue("suffix"));
generator.setType(options.getValue("type"));
bool resultGenerator = generator.run();
if(!options.getFlag("quiet")) {
if(resultGenerator)
qDebug() << "Generation succeeded.";
else
qDebug() << "Plugin generation: Generation failed.";
}
} else {
dtkPluginGeneratorMainWindow generator;
generator.show();
generator.raise();
return app.exec();
}
}
int main(int argc, char** argv)
#endif
/*
#else
int WinMain(
HINSTANCE hInstance,
HINSTANCE hPrevInstance,
LPSTR lpCmdLine,
int nCmdShow)
#endif
*/
{
string datapath;
AnyOption *opt = new AnyOption();
opt->addUsage( "" );
opt->addUsage( "Usage: " );
opt->addUsage( "" );
opt->addUsage( " -h --help Prints this help " );
opt->addUsage( " -d --data-path /dir Data files path " );
opt->addUsage( "" );
opt->setFlag( "help", 'h' );
opt->setOption( "data-path", 'd' );
opt->processCommandArgs( argc, argv );
if( opt->getFlag( "help" ) || opt->getFlag( 'h' ) )
{
GWDBG_OUTPUT("Usage")
opt->printUsage();
delete opt;
return 0;
}
if( opt->getValue( 'd' ) != NULL || opt->getValue( "data-size" ) != NULL )
datapath = opt->getValue('d');
delete opt;
try
{
#ifdef GP2X
GW_PlatformGP2X platform;
#elif defined(GW_PLAT_PANDORA)
GW_PlatformPandora platform;
#elif defined(GW_PLAT_S60)
GW_PlatformS60 platform;
#elif defined(GW_PLAT_WIZ)
GW_PlatformWIZ platform;
#elif defined(GW_PLAT_ANDROID)
GW_PlatformAndroid platform;
#elif defined(GW_PLAT_IOS)
GW_PlatformIOS platform;
#else
GW_PlatformSDL platform(640, 480);
#endif
if (!datapath.empty())
platform.datapath_set(datapath);
platform.initialize();
GW_GameList gamelist(&platform);
GW_Menu menu(&platform, &gamelist);
menu.Run();
platform.finalize();
} catch (GW_Exception &e) {
GWDBG_OUTPUT(e.what().c_str())
fprintf(stderr, "%s\n", e.what().c_str());
return 1;
}
return 0;
}
int process_option(int argc, char* argv[]){
AnyOption *opt = new AnyOption();
opt->setVerbose();
opt->addUsage( "" );
opt->addUsage( "Usage: " );
opt->addUsage( "" );
opt->addUsage( "--S0" );
opt->addUsage( "--G0" );
opt->addUsage( "--RhoGEF0" );
opt->addUsage( "--RhoA0" );
opt->addUsage( "--Inhibitor0" );
opt->addUsage( "--kg1" );
opt->addUsage( "--kg2" );
opt->addUsage( "--kf1" );
opt->addUsage( "--kfd" );
opt->addUsage( "--kg3" );
opt->addUsage( "--kgd" );
opt->addUsage( "--kf2" );
opt->addUsage( "--ka1" );
opt->addUsage( "--ka2" );
opt->addUsage( "--ki1" );
opt->addUsage( "--kid" );
opt->addUsage( "" );
opt->setOption( "S0" );
opt->setOption( "G0" );
opt->setOption( "RhoGEF0" );
opt->setOption( "RhoA0" );
opt->setOption( "Inhibitor0" );
opt->setOption( "kg1" );
opt->setOption( "kg2" );
opt->setOption( "kf1" );
opt->setOption( "kfd" );
opt->setOption( "kg3" );
opt->setOption( "kgd" );
opt->setOption( "kf2" );
opt->setOption( "ka1" );
opt->setOption( "ka2" );
opt->setOption( "ki1" );
opt->setOption( "kid" );
opt->processCommandArgs( argc, argv );
if( opt->getValue( "S0" ) != NULL ){
S0 = atof(opt->getValue( "S0" ));
}
if( opt->getValue( "G0" ) != NULL ){
G0 = atof(opt->getValue( "G0" ));
}
if( opt->getValue( "RhoGEF0" ) != NULL ){
RhoGEF0 = atof(opt->getValue( "RhoGEF0" ));
}
if( opt->getValue( "RhoA0" ) != NULL ){
RhoA0 = atof(opt->getValue( "RhoA0" ));
}
if( opt->getValue( "Inhibitor0" ) != NULL ){
Inhibitor0 = atof(opt->getValue( "Inhibitor0" ));
}
if( opt->getValue( "kg1" ) != NULL ){
kg1 = atof(opt->getValue( "kg1" ));
}
if( opt->getValue( "kg2" ) != NULL ){
kg2 = atof(opt->getValue( "kg2" ));
}
if( opt->getValue( "kf1" ) != NULL ){
kf1 = atof(opt->getValue( "kf1" ));
}
if( opt->getValue( "kfd" ) != NULL ){
kfd = atof(opt->getValue( "kfd" ));
}
if( opt->getValue( "kg3" ) != NULL ){
kg3 = atof(opt->getValue( "kg3" ));
}
if( opt->getValue( "kgd" ) != NULL ){
kgd = atof(opt->getValue( "kgd" ));
}
if( opt->getValue( "kf2" ) != NULL ){
kf2 = atof(opt->getValue( "kf2" ));
}
if( opt->getValue( "ka1" ) != NULL ){
ka1 = atof(opt->getValue( "ka1" ));
}
if( opt->getValue( "ka2" ) != NULL ){
ka2 = atof(opt->getValue( "ka2" ));
}
if( opt->getValue( "ki1" ) != NULL ){
ki1 = atof(opt->getValue( "ki1" ));
}
if( opt->getValue( "kid" ) != NULL ){
kid = atof(opt->getValue( "kid" ));
}
return 0;
}
int main(int argc, char * argv[], MPI_Comm commWorld)
{
#else
int main(int argc, char * argv[])
{
MPI_Comm commWorld;
#endif
std::string fileName;
int reduceDM = 10;
int reduceS= 1;
#ifndef PARTICLESRENDERER
std::string fullScreenMode = "";
bool stereo = false;
#endif
int nmaxsample = 200000;
std::string display;
bool inSitu = false;
bool quickSync = true;
int sleeptime = 1;
{
AnyOption opt;
#define ADDUSAGE(line) {{std::stringstream oss; oss << line; opt.addUsage(oss.str());}}
ADDUSAGE(" ");
ADDUSAGE("Usage:");
ADDUSAGE(" ");
ADDUSAGE(" -h --help Prints this help ");
ADDUSAGE(" -i --infile # Input snapshot filename ");
ADDUSAGE(" -I --insitu Enable in-situ rendering ");
ADDUSAGE(" --sleep # start up sleep in sec [1] ");
ADDUSAGE(" --noquicksync disable syncing with simulation [enabled] ");
ADDUSAGE(" --reduceDM # cut down DM dataset by # factor [10]. 0-disable DM");
ADDUSAGE(" --reduceS # cut down stars dataset by # factor [1]. 0-disable S");
#ifndef PARTICLESRENDERER
ADDUSAGE(" --fullscreen # set fullscreen mode string");
ADDUSAGE(" --stereo enable stereo rendering");
#endif
ADDUSAGE(" -s --nmaxsample # set max number of samples for DD [" << nmaxsample << "]");
ADDUSAGE(" -D --display # set DISPLAY=display, otherwise inherited from environment");
opt.setFlag ( "help" , 'h');
opt.setOption( "infile", 'i');
opt.setFlag ( "insitu", 'I');
opt.setOption( "reduceDM");
opt.setOption( "sleep");
opt.setOption( "reduceS");
opt.setOption( "fullscreen");
opt.setFlag("stereo");
opt.setOption("nmaxsample", 's');
opt.setOption("display", 'D');
opt.setFlag ( "noquicksync");
opt.processCommandArgs( argc, argv );
if( ! opt.hasOptions() || opt.getFlag( "help" ) || opt.getFlag( 'h' ) )
{
/* print usage if no options or requested help */
opt.printUsage();
::exit(0);
}
char *optarg = NULL;
if (opt.getFlag("insitu")) inSitu = true;
if ((optarg = opt.getValue("infile"))) fileName = std::string(optarg);
if ((optarg = opt.getValue("reduceDM"))) reduceDM = atoi(optarg);
if ((optarg = opt.getValue("reduceS"))) reduceS = atoi(optarg);
#ifndef PARTICLESRENDERER
if ((optarg = opt.getValue("fullscreen"))) fullScreenMode = std::string(optarg);
if (opt.getFlag("stereo")) stereo = true;
#endif
if ((optarg = opt.getValue("nmaxsample"))) nmaxsample = atoi(optarg);
if ((optarg = opt.getValue("display"))) display = std::string(optarg);
if ((optarg = opt.getValue("sleep"))) sleeptime = atoi(optarg);
if (opt.getValue("noquicksync")) quickSync = false;
if ((fileName.empty() && !inSitu) ||
reduceDM < 0 || reduceS < 0)
{
opt.printUsage();
::exit(0);
}
#undef ADDUSAGE
}
MPI_Comm comm = MPI_COMM_WORLD;
int mpiInitialized = 0;
MPI_Initialized(&mpiInitialized);
if (!mpiInitialized)
MPI_Init(&argc, &argv);
else
comm = commWorld;
int nranks, rank;
MPI_Comm_size(comm, &nranks);
MPI_Comm_rank(comm, &rank);
char processor_name[MPI_MAX_PROCESSOR_NAME];
int namelen;
MPI_Get_processor_name(processor_name,&namelen);
fprintf(stderr, "bonsai_renderer:: Proc id: %d @ %s , total processes: %d (mpiInit) \n", rank, processor_name, nranks);
if (rank == 0)
{
char hostname[256];
gethostname(hostname,256);
char * display = getenv("DISPLAY");
fprintf(stderr, "root: %s display: %s \n", hostname, display);
}
if (!display.empty())
{
std::string var="DISPLAY="+display;
putenv((char*)var.c_str());
}
if (rank == 0)
fprintf(stderr, " Sleeping for %d seconds \n", sleeptime);
sleep(sleeptime);
using BonsaiCatalystDataT = BonsaiCatalystData;
BonsaiCatalystDataT *rDataPtr;
if (inSitu)
{
rDataPtr = new BonsaiCatalystDataT(rank,nranks,comm);
}
else
{
if ((rDataPtr = readBonsai<BonsaiCatalystDataT>(rank, nranks, comm, fileName, reduceDM, reduceS)))
{}
else
{
if (rank == 0)
fprintf(stderr, " I don't recognize the format ... please try again , or recompile to use with old tipsy if that is what you use ..\n");
MPI_Finalize();
::exit(-1);
}
rDataPtr->computeMinMax();
rDataPtr->setNewData();
}
assert(rDataPtr != 0);
auto callbackFunc = [&](const int code)
{
int quitL = (code == -1) || terminateRenderer; /* exit code */
int quitG;
MPI_Allreduce(&quitL, &quitG, 1, MPI_INT, MPI_SUM, comm);
if (quitG)
{
MPI_Finalize();
::exit(0);
}
if (inSitu )
if (fetchSharedData(quickSync, *rDataPtr, rank, nranks, comm, reduceDM, reduceS))
{
rDataPtr->setNewData();
}
};
bonsaistd::function<void(int)> callback = callbackFunc;
callback(0); /* init data set */
renderer(
argc, argv,
rank, nranks, comm,
*rDataPtr,
fullScreenMode.c_str(),
stereo,
callback);
// while(1) {}
return 0;
}
/// parse the command line options for the program
AnyOption *parseOptions (int argc, char *argv[], algorithm_t &algorithm) {
AnyOption *opt = new AnyOption;
/* parse command line options */
opt->setFlag ("help", 'h'); /* a flag (takes no argument), supporting long and short form */
opt->setOption ("loglevel", 'l');
opt->setOption ("sort", 's');
opt->setFlag ("x", 'x'); /* special debugging flag */
opt->setOption ("restart", 'r');
opt->setOption ("oaconfig", 'c'); /* file that specifies the design */
opt->setOption ("output", 'o'); /* prefix for output files */
opt->setFlag ("generate", 'g'); /* only generate extensions, do not perform LMC check */
opt->setFlag ("coptions"); /* print compile time options */
opt->setOption ("format", 'f'); /* format to write to */
opt->setOption ("mode", 'm'); /* algorithm method */
opt->setOption ("maxk", 'K'); /* max number of columns to extend to */
opt->setOption ("rowsymmetry", 'R'); /* max number of columns to extend to */
opt->setFlag ("streaming"); /* operate in streaming mode */
opt->setOption ("initcolprev", 'I'); /* algorithm method */
opt->addUsage ("Orthonal Arrays: extend orthogonal arrays");
#ifdef OAEXTEND_SINGLECORE
opt->addUsage ("Usage: oaextendmpi [OPTIONS]");
#else
opt->addUsage ("Usage: oaextendsingle [OPTIONS]");
#endif
opt->addUsage ("");
opt->addUsage (" -h --help Prints this help ");
opt->addUsage (" --coptions Show compile time options used ");
opt->addUsage (" -r [FILE] --restart [FILE] Restart with results file ");
opt->addUsage (" -l [LEVEL] --loglevel [LEVEL] Set loglevel to number ");
opt->addUsage (" -s [INTEGER] --sort [INTEGER] Sort input and output arrays (default: 1) ");
opt->addUsage (" -c [FILE] --oaconfig [FILE] Set file with design specification");
opt->addUsage (" -g --generate [FILE] Only generate arrays, do not perform LMC check");
opt->addUsage (" --rowsymmetry [VALUE] Use row symmetry in generation");
opt->addUsage (" -o [STR] --output [FILE] Set prefix for output (default: result) ");
opt->addUsage (" -f [FORMAT] Output format (default: TEXT, or BINARY, D, Z). Format D is "
"binary difference, format Z is binary with zero-difference ");
opt->addUsage (" --initcolprev [INTEGER] Initialization method of new column (default: 1)");
opt->addUsage (
" --maxk [INTEGER] Maximum number of columns to exten to (default: extracted from config file) ");
opt->addUsage (
" --streaming Operate in streaming mode. Generated arrays will be written to disk "
"immediately. ");
std::string ss = printfstring (" -m [MODE] Algorithm (") + algorithm_t_list () + ")\n";
opt->addUsage (ss.c_str ());
// opt->printUsage();
opt->addUsage ("");
opt->addUsage ("Example: ./oaextendsingle -l 2");
opt->processCommandArgs (argc, argv);
if (opt->getValue ("mode") != NULL || opt->getValue ('m') != NULL) {
int vv = atoi (opt->getValue ('m')); // set custom loglevel
algorithm = (algorithm_t)vv;
} else {
algorithm = MODE_AUTOSELECT;
}
return opt;
}
/**
Utilizing AnyOption class, take the command line and parse it for valid options. Handle usage printout as well.
@param argc argc from main()
@param char**argv array of char* directly from main()
@returns If an error occurs, return false. Currently no errors. Always returns true.
*/
bool parsecmd(int argc, char**argv)
{
stringstream str;
// Setup all default values if not already set by simple strings and values above.
if (getenv("WEBRTC_SERVER"))
mainserver = xGetDefaultServerName();
if (getenv("WEBRTC_CONNECT"))
{
stunserver = "STUN ";
stunserver += xGetPeerConnectionString();
}
peername = xGetPeerName();
AnyOption *opt = new AnyOption();
opt->addUsage("Usage: ");
opt->addUsage("");
opt->addUsage(" -h --help Prints this help ");
opt->addUsage(" --server <servername|IP>[:<serverport>] Main sever and optional port.");
opt->addUsage(
" --stun <stunserver|IP>[:<port>] STUN server (and optionally port).\n Default is " STUNSERVER_DEFAULT);
opt->addUsage(
" --peername <Name> Use this name as my client/peer name online.");
opt->addUsage(" --avopts <none|audio|video|audiovideo> Enable audio, video, or audiovideo.");
opt->addUsage("");
opt->addUsage("Environment variables can be used as defaults as well.");
opt->addUsage(" WEBRTC_SERVER - Main server name.");
opt->addUsage(" WEBRTC_CONNECT - STUN server name with port.");
opt->addUsage(" USERNAME - Peer user name.");
opt->addUsage("");
opt->setFlag("help", 'h');
opt->setOption("server");
opt->setOption("stun");
opt->setOption("peername");
opt->setOption("avopts");
opt->processCommandArgs(argc, argv);
/* 6. GET THE VALUES */
if (opt->getFlag("help") || opt->getFlag('h'))
{
opt->printUsage();
exit(1);
}
if (opt->getValue("server"))
{
cout << "New main server is " << opt->getValue("server") << endl;
string serverloc = opt->getValue("server");
size_t colonpos = serverloc.find(':');
mainserver = serverloc.substr(0,colonpos);
if(colonpos != string::npos)
{
stringstream sstrm;
sstrm << serverloc.substr(colonpos+1);
sstrm >> mainserver_port;
}
AnyOption *parseInputOptions( int argc, char **argv ) {
// parse input options
AnyOption *opt = new AnyOption();
opt->addUsage( "Usage: " );
opt->addUsage( "" );
opt->addUsage( "The options below can be specified in a colon-separated file \"raytrace.2d.options\" or at the command line. Command-line options override file options." );
opt->addUsage( " --help -h Print this message and exit" );
//opt->addUsage( " --atmosout Output the atmosphere and all its derivatives to atmospheric_profile.out");
opt->addUsage( "" );
opt->addUsage( "To use an arbitrary 1-D atmospheric profile in ASCII format (space or comma-separated) the following options apply:" );
opt->addUsage( "REQUIRED (no default values):" );
opt->addUsage( " --atmosfile <filename> Uses an ASCII atmosphere file" );
opt->addUsage( " --atmosfileorder The order of the (z,t,u,v,w,p,d) fields in the ASCII file (Ex: 'ztuvpd')" );
opt->addUsage( " --elev Value in range (-90,90)" );
opt->addUsage( " --azimuth Value in range [0,360), clockwise from north" );
opt->addUsage( " --maxraylength Maximum ray length to calculate (km) [none]" );
opt->addUsage( "OPTIONAL [defaults]:" );
opt->addUsage( " --skiplines Lines at the beginning of the ASCII file to skip [0]" );
opt->addUsage( " --maxelev Maximum elevation angle to calculate [--elev value]" );
opt->addUsage( " --delev Elevation angle step [1]" );
opt->addUsage( " --maxazimuth Maximum azimuth to calculate [--azimuth value]" );
opt->addUsage( " --dazimuth Azimuth angle step [1]" );
opt->addUsage( " --sourceheight Height at which to begin raytrace [ground level]" );
opt->addUsage( " --maxheight Height at which to cut off calculation [150 km]" );
opt->addUsage( " --maxrange Maximum distance from origin to calculate (km) [no maximum]" );
opt->addUsage( " --stepsize Ray length step size for computation, km [0.01]" );
opt->addUsage( " --skips Maximum number of skips to allow. Use 0 for no limits. [0]" );
opt->addUsage( " --wind_units Specify 'kmpersec' if the winds are given in km/s [mpersec]" );
opt->addUsage( "FLAGS (no value required):" );
opt->addUsage( " --partial Report the final, incomplete raypath as well as the complete bounces." );
opt->addUsage( "" );
/*
opt->addUsage( "To use a set of ASCII files that form a 2-D slice of the atmosphere the following options apply:" );
opt->addUsage( "REQUIRED (no default values):" );
opt->addUsage( " --slicefile <filename> The name of the summary file describing the path (see documentation)" );
opt->addUsage( " --elev Value in range (-90,90)" );
opt->addUsage( " --maxraylength Maximum ray length to calculate (km) [none]" );
opt->addUsage( "OPTIONAL [defaults]:" );
opt->addUsage( " --maxelev Maximum elevation angle to calculate [--elev value]" );
opt->addUsage( " --delev Elevation angle step [1]" );
opt->addUsage( " --maxazimuth Maximum azimuth to calculate [--azimuth value]" );
opt->addUsage( " --dazimuth Azimuth angle step [1]" );
opt->addUsage( " --sourceheight Height at which to begin raytrace [ground level]" );
opt->addUsage( " --maxheight Height at which to cut off calculation [150 km]" );
opt->addUsage( " --maxrange Maximum distance from origin to calculate (km) [no maximum]" );
opt->addUsage( " --stepsize Ray length step size for computation, km [0.01]" );
opt->addUsage( " --skips Maximum number of skips to allow. Use 0 for no limits. [0]" );
opt->addUsage( "FLAGS (no value required):" );
opt->addUsage( " --partial Report the final, incomplete raypath as well as the complete bounces." );
opt->addUsage( "" );
opt->addUsage( "To use an analytic profile with Gaussian wind jets the following options apply:" );
opt->addUsage( "REQUIRED (no default values):" );
opt->addUsage( " --jetfile <filename> The parameter file for the profile" );
opt->addUsage( " --elev Value in range (-90,90)" );
opt->addUsage( " --azimuth Value in range [0,360), clockwise from north (optional for --envfile)" );
opt->addUsage( " --maxraylength Maximum ray length to calculate (km) [none]" );
opt->addUsage( "OPTIONAL [defaults]:" );
opt->addUsage( " --maxelev Maximum elevation angle to calculate [--elev value]" );
opt->addUsage( " --delev Elevation angle step [1]" );
opt->addUsage( " --maxazimuth Maximum azimuth to calculate [--azimuth value]" );
opt->addUsage( " --dazimuth Azimuth angle step [1]" );
opt->addUsage( " --sourceheight Height at which to begin raytrace [ground level]" );
opt->addUsage( " --maxheight Height at which to cut off calculation [150 km]" );
opt->addUsage( " --maxrange Maximum distance from origin to calculate (km) [no maximum]" );
opt->addUsage( " --stepsize Ray length step size for computation, km [0.1]" );
opt->addUsage( " --skips Maximum number of skips to allow. Use 0 for no limits. [0]" );
opt->addUsage( "FLAGS (no value required):" );
opt->addUsage( " --partial Report the final, incomplete raypath as well as the complete bounces." );
*/
opt->addUsage( "" );
opt->addUsage( "Examples (run from 'samples' directory):" );
opt->addUsage( "../bin/raytrace.2d --azimuth 90 --elev 1 --delev 1 --maxelev 45 --skips 1 --atmosfile NCPA_canonical_profile_zuvwtdp.dat --atmosfileorder zuvwtdp --maxraylength 800 --maxheight 140" );
opt->addUsage( "cat raypath_az090* > raypaths.2d.dat" );
opt->addUsage( "rm raypath_az090*" );
// Set up the actual flags and stuff
opt->setFlag( "help", 'h' );
opt->setFlag( "norange" );
opt->setFlag( "atmosout" );
opt->setFlag( "partial" );
opt->setOption( "slicefile" );
opt->setOption( "atmosfile" );
opt->setOption( "jetfile" );
opt->setOption( "elev" );
opt->setOption( "azimuth" );
opt->setOption( "maxraylength" );
opt->setOption( "lat" );
opt->setOption( "lon" );
opt->setOption( "maxrange" );
opt->setOption( "maxelev" );
opt->setOption( "delev" );
opt->setOption( "maxazimuth" );
opt->setOption( "dazimuth" );
opt->setOption( "sourceheight" );
opt->setOption( "maxheight" );
opt->setOption( "stepsize" );
opt->setOption( "dZ" );
opt->setOption( "dR" );
opt->setOption( "atmosfileorder" );
opt->setOption( "skiplines" );
opt->setOption( "skips" );
opt->setOption( "wind_units" );
// Process the command-line arguments
opt->processFile( "./raytrace.2d.options" );
opt->processCommandArgs( argc, argv );
if( ! opt->hasOptions()) { // print usage if no options
opt->printUsage();
delete opt;
exit( 1 );
}
// Check to see if help text was requested
if ( opt->getFlag( "help" ) || opt->getFlag( 'h' ) ) {
opt->printUsage();
exit( 1 );
}
return opt;
}
int main(int argc, char **argv){
// nekonstantni nastaveni generatoru nahodnych cisel
srand((unsigned int)time(0));
// server cast
clock_t t1, t2;
t1 = clock();
int NP = 50;
double F = 0.7;
double CR = 0.6;
int Generations = 10;
int pocet_neuronu = 5;
char *nejlepsi_jedinec = "nejlepsi_jedinec.txt";
char *data = "data.txt";
int tichy = 0;
// parsovani parametru
AnyOption *opt = new AnyOption();
opt->setVerbose(); /* print warnings about unknown options */
opt->autoUsagePrint(true); /* print usage for bad options */
opt->addUsage( "" );
opt->addUsage( "NNSA (Neural Network Space Arcade) - Testovani rekuretni neuronove site na jednoduche arkade" );
opt->addUsage( "" );
opt->addUsage( "Pouziti: " );
opt->addUsage( "" );
opt->addUsage( " -h --help Zobrazi tuto napovedu " );
opt->addUsage( " -n jedinec.txt Nejlepsi jedinec " );
opt->addUsage( " -d data.txt Udaje o jednotlivych generacich " );
opt->addUsage( " " );
opt->addUsage( " --NP 60 Velikost populace " );
opt->addUsage( " --F 0.7 Mutacni konstanta " );
opt->addUsage( " --CR 0.8 Prah krizeni " );
opt->addUsage( " --generations 100 Pocet kol slechteni populace " );
opt->addUsage( " --neurons 4 Pocet neuronu v neuronove siti " );
opt->addUsage( " --quiet 1 Neukecany rezim " );
opt->addUsage( "" );
opt->setFlag( "help", 'h'); /* a flag (takes no argument), supporting long and short form */
opt->setOption('n');
opt->setOption('d');
opt->setOption("NP");
opt->setOption("F");
opt->setOption("CR");
opt->setOption("generations");
opt->setOption("neurons");
opt->setOption("quiet");
opt->processCommandArgs(argc, argv);
NP = atoi(opt->getValue("NP"));
F = atof(opt->getValue("F"));
CR = atof(opt->getValue("CR"));
Generations = atoi(opt->getValue("generations"));
pocet_neuronu = atoi(opt->getValue("neurons"));
nejlepsi_jedinec = opt->getValue('n');
data = opt->getValue('d');
tichy = atoi(opt->getValue("quiet"));
cout << "Parametry diferencialni evoluce:" << endl;
cout << " -> Velikost populace NP = " << NP << endl;
cout << " -> Mutacni konstanta F = " << F << endl;
cout << " -> Prah krizeni CR = " << CR << endl;
cout << " -> Pocet generaci = " << Generations << endl;
cout << " -> Pocet neuronu = " << pocet_neuronu << endl;
DiferencialniEvoluce *d1 = new DiferencialniEvoluce(NP, F, CR, Generations, pocet_neuronu, &ohodnoceni, tichy, data);
d1->UlozNejlepsiJedinec(nejlepsi_jedinec);
// 32bit - pretece cca po 36 minutach
t2 = clock();
cout << "Doba behu programu: " << ((double) (t2 - t1))/CLOCKS_PER_SEC << endl;
return 0;
}