Esempi in C++ (Cpp) per BloomFilter::containsMur

Esempio n. 1

File: nttest.cpp Progetto: bcgsc/ntHash

void querySeqm(BloomFilter & myFilter, const string & seq, size_t & fHit) {
    if (seq.size() < opt::kmerLen) return;
    for (size_t i = 0; i < seq.size() - opt::kmerLen + 1; i++) {
        string kmer = seq.substr(i, opt::kmerLen);
        getCanon(kmer);
        if(myFilter.containsMur(kmer.c_str())) {
            #ifdef _OPENMP
            #pragma omp atomic
            #endif
            ++fHit;
        }
    }
}