Esempi in C++ (Cpp) per CConstRef::NotEmpty

Esempio n. 1

File: local_blastdb_adapter.cpp Progetto: swuecho/igblast

int 
CLocalBlastDbAdapter::GetTaxId(const CSeq_id_Handle& idh)
{
    int retval = static_cast<int>(kInvalidSeqPos);
    CConstRef<CSeq_id> id = idh.GetSeqId();
    if (id.NotEmpty()) {
        int oid = 0;
        if (SeqidToOid(*id, oid)) {
            map<int, int> gi_to_taxid;
            m_SeqDB->GetTaxIDs(oid, gi_to_taxid);
            if (idh.IsGi()) {
                retval = gi_to_taxid[GI_TO(int, idh.GetGi())];
            } else {

Esempio n. 2

File: Location_constraint.cpp Progetto: svn2github/ncbi_tk

bool CLocation_constraint :: x_DoesLocationMatchDistanceConstraint(CConstRef <CBioseq> bioseq, const CSeq_loc& loc) const
{
  if (!CanGetEnd5() && !CanGetEnd3()) {
      return true;
  }

  unsigned pos = loc.GetStop(eExtreme_Positional);
  int pos2;
  if (bioseq.NotEmpty()) {
     pos2 = (bioseq->IsSetLength() ?  bioseq->GetLength() : 0) - pos - 1;
  }

  if (loc.GetStrand() == eNa_strand_minus) {
    if (CanGetEnd5()) {
      if (bioseq.Empty()) {
          return false;
      }
      else {
        if (!GetEnd5().Match(pos2)) {
           return false;
        }
      }
    }
    if (CanGetEnd3()) {
        return GetEnd3().Match(pos);
    }
  }
  else
  {
    if (CanGetEnd5() && !GetEnd5().Match(pos)) {
        return false;
    }
    if (CanGetEnd3()) {
      if (bioseq.Empty()) {
         return false;
      }
      return GetEnd3().Match(pos2);
    }
  }
  return true;
};