std::string Arguments::prepareModel() const
{
if (!isValid()) return "";
CCopasiDataModel* model = (*CCopasiRootContainer::getDatamodelList())[0];
model->loadModel(getFilename(), NULL);
if (mDisablePlots)
{
for (size_t index = 0; index < model->getPlotDefinitionList()->size(); ++index)
{
(*model->getPlotDefinitionList())[index]->setActive(false);
}
}
if (mClearTargets)
{
for (size_t index = 0; index < model->getTaskList()->size(); ++index)
{
(*model->getTaskList())[index]->getReport().setTarget("");
}
}
CCopasiTask *task = getTask();
if (task != NULL)
{
if (isGenerateOutput())
{
// calls initialize which is private
COutputAssistant::getListOfDefaultOutputDescriptions();
// generate the output
COutputAssistant::createDefaultOutput(mGenerateOutput, task, model);
}
if (haveReportFile())
task->getReport().setTarget(mReportFile);
COptTask* optTask = dynamic_cast<COptTask*>(task);
if (optTask != NULL)
{
COptProblem *problem = (COptProblem *)optTask->getProblem();
if (mSetSolutionStatistic)
optTask->setMethodType(CCopasiMethod::Statistics);
if (isDisableRandomizeStartValues())
problem->setRandomizeStartValues(false);
if (isDisableStatistic())
problem->setCalculateStatistics(false);
}
}
model->saveModel(getFilename() + ".view.cps", NULL, true);
return getFilename() + ".view.cps";
}
