void test()
{
{
MSData tiny;
examples::initializeTiny(tiny);
MSDataFile::WriteConfig writeConfig;
Serializer_mz5 serializer(writeConfig);
IterationListenerRegistry ilr;
serializer.write(testFilename, tiny, &ilr);
MSData dummy;
serializer.read(testFilename, dummy);
// so we don't have any dangling references
//dummy.instrumentPtrs.push_back(InstrumentPtr(new Instrument("LCQ_Deca")));
dummy.dataProcessingPtrs.push_back(DataProcessingPtr(new DataProcessing(
"pwiz_processing")));
dummy.dataProcessingPtrs.push_back(DataProcessingPtr(new DataProcessing(
"CompassXtract processing")));
ChromatogramListPtr sl = dummy.run.chromatogramListPtr;
// check easy functions
unit_assert(sl.get());
unit_assert(sl->size() == 2);
unit_assert(sl->find("tic") == 0);
unit_assert(sl->find("sic") == 1);
// check tic
ChromatogramPtr s = sl->chromatogram(0); // read without binary data
unit_assert(s.get());
unit_assert(s->id == "tic");
unit_assert(s->binaryDataArrayPtrs.empty());
unit_assert(sl->chromatogramIdentity(0).index == 0);
unit_assert(sl->chromatogramIdentity(0).id == "tic");
s = sl->chromatogram(0, true); // read with binary data
vector < TimeIntensityPair > pairs;
s->getTimeIntensityPairs(pairs);
unit_assert(pairs.size() == 15);
for (int i = 0; i < 15; i++)
unit_assert(pairs[i].time == i && pairs[i].intensity == 15 - i);
// check sic
s = sl->chromatogram(1, true);
unit_assert(s.get());
unit_assert(s->id == "sic");
unit_assert(sl->chromatogramIdentity(1).index == 1);
unit_assert(sl->chromatogramIdentity(1).id == "sic");
pairs.clear();
s->getTimeIntensityPairs(pairs);
unit_assert(pairs.size() == 10);
for (int i = 0; i < 10; i++)
unit_assert(pairs[i].time == i && pairs[i].intensity == (10 - i));
}
bfs::remove(testFilename);
}
