bool Amisic::Initialize()
{
if (InputPath()=="" && InputFile()=="") return false;
Data_Reader *reader = new Data_Reader(" ",";","!","=");
reader->AddComment("#");
reader->AddWordSeparator("\t");
reader->SetInputPath(InputPath());
reader->SetInputFile(InputFile());
std::vector<std::string> model;
if (!reader->VectorFromFile(model,"HARD_MODEL_NAME")) {
model.push_back("Simple_Chain");
}
for (size_t i=1;i<model.size();++i) model[0]+=" "+model[i];
SelectHardModel(model[0]);
if (!reader->VectorFromFile(model,"SOFT_MODEL_NAME")) {
model.push_back("None");
}
for (size_t i=1;i<model.size();++i) model[0]+=" "+model[i];
SelectSoftModel(model[0]);
std::string file;
if (!reader->ReadFromFile(file,"HARD_MODEL_FILE")) file=InputFile();
p_hardbase->SetInputPath(InputPath());
p_hardbase->SetInputFile(file);
if (!reader->ReadFromFile(file,"SOFT_MODEL_FILE")) file=InputFile();
p_softbase->SetInputPath(InputPath());
p_softbase->SetInputFile(file);
delete reader;
bool success=true;
success=success&&p_hardbase->Initialize();
success=success&&p_softbase->Initialize();
return success;
}
