void tst_QQuickAccessible::cleanup() { const EventList list = QTestAccessibility::events(); if (!list.isEmpty()) { qWarning("%d accessibility event(s) were not handled in testfunction '%s':", list.count(), QString(QTest::currentTestFunction()).toLatin1().constData()); for (int i = 0; i < list.count(); ++i) qWarning(" %d: Object: %p Event: '%s' Child: %d", i + 1, list.at(i)->object(), qAccessibleEventString(list.at(i)->type()), list.at(i)->child()); } QTestAccessibility::clearEvents(); }
void EventsWindow::eventContextMenu(const QPoint &pos) { EventsView *view = qobject_cast<EventsView*>(sender()); if (!view) return; EventList selectedEvents = view->selectedEvents(); EventList selectedMediaEvents = selectedEvents.filter(MediaEventFilter()); EventList selectedCameraEvents = selectedEvents.filter(CameraEventFilter()); QMenu menu(view); QAction *aPlay = menu.addAction(tr("Play video")); aPlay->setEnabled(selectedMediaEvents.size() == 1); menu.setDefaultAction(aPlay); QAction *aPlayWindow = menu.addAction(tr("Play in a new window")); aPlayWindow->setEnabled(selectedMediaEvents.size() == 1); menu.addSeparator(); QAction *aSave = menu.addAction(tr("Save video")); aSave->setEnabled(!selectedMediaEvents.isEmpty()); menu.addSeparator(); QAction *aSelectOnly = menu.addAction(tr("Show only this camera")); aSelectOnly->setEnabled(!selectedCameraEvents.isEmpty()); QAction *aSelectElse = menu.addAction(tr("Exclude this camera")); aSelectElse->setEnabled(!selectedCameraEvents.isEmpty()); QAction *act = menu.exec(view->mapToGlobal(pos)); if (!act) return; else if (act == aPlay) showEvent(view->currentIndex()); else if (act == aPlayWindow) { ModelEventsCursor *modelEventsCursor = new ModelEventsCursor(); modelEventsCursor->setModel(view->model()); modelEventsCursor->setCameraFilter(selectedMediaEvents.at(0).locationCamera()); modelEventsCursor->setIndex(view->currentIndex().row()); EventViewWindow::open(selectedMediaEvents.at(0), modelEventsCursor); } else if (act == aSave) { if (selectedMediaEvents.size() == 1) bcApp->eventDownloadManager()->startEventDownload(selectedMediaEvents.at(0)); else bcApp->eventDownloadManager()->startMultipleEventDownloads(selectedMediaEvents); } else if (act == aSelectOnly || act == aSelectElse) { EventSourcesModel *sModel = qobject_cast<EventSourcesModel*>(m_sourcesView->model()); Q_ASSERT(sModel); if (!sModel) return; QSet<DVRCamera *> cameras = selectedCameraEvents.cameras(); QModelIndex sIdx = sModel->indexOfCamera(*cameras.begin()); if (act == aSelectOnly) { m_sourcesView->checkOnlyIndex(sIdx); // uncheck all, some kind of temporary hack foreach (DVRCamera *camera, cameras) sModel->setData(sModel->indexOfCamera(camera), Qt::Checked, Qt::CheckStateRole); } else { foreach (DVRCamera *camera, cameras) sModel->setData(sModel->indexOfCamera(camera), Qt::Unchecked, Qt::CheckStateRole); } } }
int runFishhook(int argc, char** argv) { parseFishOptions(argc, argv); if (opt::verbose) { std::cerr << "FishHook Params: " << std::endl << "\tWidth: " << SeqLib::AddCommas(opt::width) << std::endl << "\tEvents: " << opt::events << std::endl << "\tCoverage Mask: " << opt::coverage << std::endl << "\tSlop: " << SeqLib::AddCommas(opt::slop) << std::endl << "\tInterval Tracks: " << std::endl; for (auto& i : opt::interval_files) std::cerr << "\t-- " << i << std::endl; std::cerr << "\tScored Tracks: " << std::endl; for (auto& i : opt::scored_files) std::cerr << "\t-- " << i << std::endl; std::cerr << "\tSequence Features: " << std::endl; for (auto& i : opt::seq_features) std::cerr << "\t-- " << i << std::endl; } // read in the covariate tracks SeqHashMap<std::string, Fractions> intervals; // read a header for info SeqLib::BamReader rdr; if (!rdr.Open(opt::bam)) { std::cerr << "Error: Could not read BAM supplied by -b: " << opt::bam << std::endl; exit(EXIT_FAILURE); } hdr = rdr.Header(); // read in the reference genome SeqLib::RefGenome ref; if (!ref.LoadIndex(opt::refgenome)) { if (opt::seq_features.size()) { std::cerr << "Error: Could not read referene genome supplied by -G: " << opt::refgenome << std::endl; exit(EXIT_FAILURE); } } // read in the events if (opt::verbose) std::cerr << "...reading events " << opt::events << std::endl; EventList events; if (!events.readFromBed(opt::events, hdr)) { std::cerr << "Error: Could not read events BED: " << opt::events << std::endl; exit(EXIT_FAILURE); } if (opt::verbose) std::cerr << "...read in " << SeqLib::AddCommas(events.size()) << " events" << std::endl; events.CreateTreeMap(); // create the tiled regions FishHookTiles fish(opt::width, opt::slop, hdr.GetHeaderSequenceVector()); if (opt::verbose) std::cerr << "...constructed " << SeqLib::AddCommas(fish.size()) << " fishhook intervals" << std::endl; fish.CreateTreeMap(); // read the coverage mask SeqLib::GRC cov; if (!opt::coverage.empty()) { if (opt::verbose) std::cerr << "...reading coverage mask " << opt::coverage << std::endl; cov.ReadBED(opt::coverage, hdr); if (opt::verbose) std::cerr << "...read in " << SeqLib::AddCommas(cov.size()) << " covered regions " << std::endl; if (!cov.size()) { std::cerr << "Non-empty coverage track read with 0 regions. Check that is non-empty BED" << std::endl; exit(EXIT_FAILURE); } if (opt::verbose) std::cerr << "...creating interval tree map on covered regions and overlapping with tiles" << std::endl; cov.CreateTreeMap(); // find covered amount per tile std::vector<int32_t> q, s; SeqLib::GRC ovlp; // fish is subject if (fish.size() > cov.size()) // do in most efficient order ovlp = cov.FindOverlaps(fish, q, s, false); else ovlp = fish.FindOverlaps(cov, s, q, false); if (opt::verbose) std::cerr << "..." << SeqLib::AddCommas(ovlp.size()) << " regions are covered" << std::endl; // set the amount covered by each for (size_t i = 0; i < ovlp.size(); ++i) { fish[s[i]].covered += (double)ovlp[i].Width() / fish[s[i]].Width(); } // mask the events q.clear(); s.clear(); ovlp.clear(); // events is subject if (events.size() > cov.size()) // do in most efficient order ovlp = cov.FindOverlaps(events, q, s, false); else ovlp = events.FindOverlaps(cov, s, q, false); EventList newe; // set the amount covered by each for (size_t i = 0; i < ovlp.size(); ++i) { newe.add(Event(ovlp[i], events.at(s[i]).id)); } events = newe; events.CreateTreeMap(); if (opt::verbose) std::cerr << "...kept " << SeqLib::AddCommas(events.size()) << " events after mask" << std::endl; } else { for (auto& i : fish) i.covered = 1; // the entire thing is covered if no mask provided } // read in the interval tracks for (auto& i : opt::interval_files) read_track(i, intervals, cov, false); for (auto& i : opt::scored_files) read_track(i, intervals, cov, true); // count events per tile (also de-dupes on patient per bin) fish.CountEvents(events); // overlap the covariates with the tiles for (auto& i : intervals) { fish.AddIntervalCovariate(i.first, i.second); } // make the matrix FishModel fm; fm.AddTiles(fish); fm.SetNumThreads(opt::num_threads); fm.EstimateOLS(); fm.CooksDistance(fm.GetOLS()); // write the covariates fish.PrintBEDHeader(std::cout); fish.PrintBED(std::cout, hdr); return 0; }