ExportMSA2SequencesTask::ExportMSA2SequencesTask(const MultipleSequenceAlignment& _ma, const QString& _url, bool _trimAli, DocumentFormatId _format)
: DocumentProviderTask(tr("Export alignment to sequence: %1").arg(_url), TaskFlag_None),
ma(_ma->getCopy()), url(_url), trimAli(_trimAli), format(_format)
{
GCOUNTER( cvar, tvar, "ExportMSA2SequencesTask");
setVerboseLogMode(true);
}
//////////////////////////////////////////////////////////////////////////
// DNAExportAlignmentTask
ExportAlignmentTask::ExportAlignmentTask(const MultipleSequenceAlignment& _ma, const QString& _fileName, DocumentFormatId _f)
: DocumentProviderTask("", TaskFlag_None), ma(_ma->getCopy()), fileName(_fileName), format(_f)
{
GCOUNTER( cvar, tvar, "ExportAlignmentTask" );
setTaskName(tr("Export alignment to '%1'").arg(QFileInfo(fileName).fileName()));
setVerboseLogMode(true);
assert(!ma->isEmpty());
}
////////////////////////////////////////
//ClustalOSupportRunDialog
ClustalOSupportRunDialog::ClustalOSupportRunDialog(const MultipleSequenceAlignment& _ma, ClustalOSupportTaskSettings& _settings, QWidget* _parent) :
QDialog(_parent), ma(_ma->getCopy()), settings(_settings)
{
setupUi(this);
new HelpButton(this, buttonBox, "19766988");
buttonBox->button(QDialogButtonBox::Ok)->setText(tr("Align"));
buttonBox->button(QDialogButtonBox::Cancel)->setText(tr("Cancel"));
inputGroupBox->setVisible(false);
this->adjustSize();
numberOfCPUSpinBox->setMaximum(AppContext::getAppSettings()->getAppResourcePool()->getIdealThreadCount());
numberOfCPUSpinBox->setValue(AppContext::getAppSettings()->getAppResourcePool()->getIdealThreadCount());
}