static
void ExpectRawIndicesEqual(const PbiRawData& expected, const PbiRawData& actual)
{
// header data
EXPECT_EQ(expected.Version(), actual.Version());
EXPECT_EQ(expected.FileSections(), actual.FileSections());
EXPECT_EQ(expected.NumReads(), actual.NumReads());
// subread data
const PbiRawBasicData& e = expected.BasicData();
const PbiRawBasicData& a = actual.BasicData();
EXPECT_EQ(e.rgId_, a.rgId_);
EXPECT_EQ(e.qStart_, a.qStart_);
EXPECT_EQ(e.qEnd_, a.qEnd_);
EXPECT_EQ(e.holeNumber_, a.holeNumber_);
EXPECT_EQ(e.readQual_, a.readQual_);
EXPECT_EQ(e.ctxtFlag_, a.ctxtFlag_);
EXPECT_EQ(e.fileOffset_, a.fileOffset_);
// mapped data
EXPECT_EQ(expected.HasMappedData(), actual.HasMappedData());
if (expected.HasMappedData() && actual.HasMappedData()) {
const PbiRawMappedData& e = expected.MappedData();
const PbiRawMappedData& a = actual.MappedData();
EXPECT_EQ(e.tId_, a.tId_);
EXPECT_EQ(e.tStart_, a.tStart_);
EXPECT_EQ(e.tEnd_, a.tEnd_);
EXPECT_EQ(e.aStart_, a.aStart_);
EXPECT_EQ(e.aEnd_, a.aEnd_);
EXPECT_EQ(e.revStrand_, a.revStrand_);
EXPECT_EQ(e.nM_, a.nM_);
EXPECT_EQ(e.nMM_, a.nMM_);
EXPECT_EQ(e.mapQV_, a.mapQV_);
}
// reference data
EXPECT_EQ(expected.HasReferenceData(), actual.HasReferenceData());
if (expected.HasReferenceData() && actual.HasReferenceData()) {
const PbiRawReferenceData& e = expected.ReferenceData();
const PbiRawReferenceData& a = actual.ReferenceData();
EXPECT_EQ(e.entries_, a.entries_);
}
// barcode data
EXPECT_EQ(expected.HasBarcodeData(), actual.HasBarcodeData());
if (expected.HasBarcodeData() && actual.HasBarcodeData()) {
const PbiRawBarcodeData& e = expected.BarcodeData();
const PbiRawBarcodeData& a = actual.BarcodeData();
EXPECT_EQ(e.bcForward_, a.bcForward_);
EXPECT_EQ(e.bcReverse_, a.bcReverse_);
EXPECT_EQ(e.bcQual_, a.bcQual_);
}
}
PbiIndexPrivate::PbiIndexPrivate(const PbiRawData& rawIndex)
: filename_(rawIndex.Filename())
, version_(rawIndex.Version())
, sections_(rawIndex.FileSections())
, numReads_(rawIndex.NumReads())
, basicData_(rawIndex.BasicData())
, mappedData_(rawIndex.MappedData())
, referenceData_(rawIndex.ReferenceData())
, barcodeData_(rawIndex.BarcodeData())
{ }