void IDFilter::filterIdentificationsByProteins(const ProteinIdentification& identification,
const vector<FASTAFile::FASTAEntry>& proteins,
ProteinIdentification& filtered_identification)
{
String protein_sequences;
String accession_sequences;
vector<ProteinHit> filtered_protein_hits;
ProteinHit temp_protein_hit;
filtered_identification = identification;
filtered_identification.setHits(vector<ProteinHit>());
for (Size i = 0; i < proteins.size(); i++)
{
accession_sequences.append("*" + proteins[i].identifier);
}
accession_sequences.append("*");
for (Size i = 0; i < identification.getHits().size(); i++)
{
if (accession_sequences.find("*" + identification.getHits()[i].getAccession()) != String::npos)
{
filtered_protein_hits.push_back(identification.getHits()[i]);
}
}
filtered_identification.setHits(filtered_protein_hits);
filtered_identification.assignRanks();
}
//Visualizing ProteinIdentification object
void MetaDataBrowser::visualize_(ProteinIdentification & meta, QTreeWidgetItem * parent)
{
ProteinIdentificationVisualizer * visualizer = new ProteinIdentificationVisualizer(isEditable(), this, this);
QStringList labels;
int id = ws_->addWidget(visualizer);
labels << QString("ProteinIdentification %1").arg(meta.getSearchEngine().c_str()) << QString::number(id);
visualizer->load(meta, id);
QTreeWidgetItem * item;
if (parent == nullptr)
{
item = new QTreeWidgetItem(treeview_, labels);
}
else
{
item = new QTreeWidgetItem(parent, labels);
}
//check for proteinhits objects
meta.assignRanks();
for (Size i = 0; i < meta.getHits().size(); ++i)
{
visualize_(const_cast<ProteinHit &>(meta.getHits()[i]), item);
}
visualize_(dynamic_cast<MetaInfoInterface &>(meta), item);
connectVisualizer_(visualizer);
}