void QgsGeometryOverlapCheck::collectErrors( QList<QgsGeometryCheckError*>& errors, QStringList &messages, QAtomicInt* progressCounter , const QgsFeatureIds &ids ) const
{
  const QgsFeatureIds& featureIds = ids.isEmpty() ? mFeaturePool->getFeatureIds() : ids;
  Q_FOREACH ( QgsFeatureId featureid, featureIds )
  {
    if ( progressCounter ) progressCounter->fetchAndAddRelaxed( 1 );
    QgsFeature feature;
    if ( !mFeaturePool->get( featureid, feature ) )
    {
      continue;
    }
    QgsAbstractGeometryV2* geom = feature.geometry()->geometry();
    QgsGeometryEngine* geomEngine = QgsGeomUtils::createGeomEngine( geom, QgsGeometryCheckPrecision::tolerance() );

    QgsFeatureIds ids = mFeaturePool->getIntersects( feature.geometry()->boundingBox() );
    Q_FOREACH ( QgsFeatureId otherid, ids )
    {
      // >= : only report overlaps once
      if ( otherid >= featureid )
      {
        continue;
      }

      QgsFeature otherFeature;
      if ( !mFeaturePool->get( otherid, otherFeature ) )
      {
        continue;
      }

      QString errMsg;
      if ( geomEngine->overlaps( *otherFeature.geometry()->geometry(), &errMsg ) )
      {
        QgsAbstractGeometryV2* interGeom = geomEngine->intersection( *otherFeature.geometry()->geometry() );
        if ( interGeom && !interGeom->isEmpty() )
        {
          QgsGeomUtils::filter1DTypes( interGeom );
          for ( int iPart = 0, nParts = interGeom->partCount(); iPart < nParts; ++iPart )
          {
            double area = QgsGeomUtils::getGeomPart( interGeom, iPart )->area();
            if ( area > QgsGeometryCheckPrecision::reducedTolerance() && area < mThreshold )
            {
              errors.append( new QgsGeometryOverlapCheckError( this, featureid, QgsGeomUtils::getGeomPart( interGeom, iPart )->centroid(), area, otherid ) );
            }
          }
        }
        else if ( !errMsg.isEmpty() )
        {
          messages.append( tr( "Overlap check between features %1 and %2: %3" ).arg( feature.id() ).arg( otherFeature.id() ).arg( errMsg ) );
        }
        delete interGeom;
      }
    }
    delete geomEngine;
  }
}
bool QgsGeometryAreaCheck::mergeWithNeighbor( QgsFeature& feature, int partIdx, int method, int mergeAttributeIndex, Changes &changes, QString& errMsg ) const
{
  double maxVal = 0.;
  QgsFeature mergeFeature;
  int mergePartIdx = -1;
  bool matchFound = false;
  QgsAbstractGeometryV2* geom = feature.geometry()->geometry();

  // Search for touching neighboring geometries
  foreach ( const QgsFeatureId& testId, mFeaturePool->getIntersects( feature.geometry()->boundingBox() ) )
  {
    QgsFeature testFeature;
    if ( !mFeaturePool->get( testId, testFeature ) )
    {
      continue;
    }
    QgsAbstractGeometryV2* testGeom = testFeature.geometry()->geometry();
    for ( int testPartIdx = 0, nTestParts = testGeom->partCount(); testPartIdx < nTestParts; ++testPartIdx )
    {
      if ( testId == feature.id() && testPartIdx == partIdx )
      {
        continue;
      }
      double len = QgsGeomUtils::sharedEdgeLength( QgsGeomUtils::getGeomPart( geom, partIdx ), QgsGeomUtils::getGeomPart( testGeom, testPartIdx ), QgsGeometryCheckPrecision::reducedTolerance() );
      if ( len > 0. )
      {
        if ( method == MergeLongestEdge || method == MergeLargestArea )
        {
          double val;
          if ( method == MergeLongestEdge )
          {
            val = len;
          }
          else
          {
            if ( dynamic_cast<QgsGeometryCollectionV2*>( testGeom ) )
              val = static_cast<QgsGeometryCollectionV2*>( testGeom )->geometryN( testPartIdx )->area();
            else
              val = testGeom->area();
          }
          if ( val > maxVal )
          {
            maxVal = val;
            mergeFeature = testFeature;
            mergePartIdx = testPartIdx;
          }
        }
        else if ( method == MergeIdenticalAttribute )
        {
          if ( testFeature.attribute( mergeAttributeIndex ) == feature.attribute( mergeAttributeIndex ) )
          {
            mergeFeature = testFeature;
            mergePartIdx = testPartIdx;
            matchFound = true;
            break;
          }
        }
      }
    }
    if ( matchFound )
    {
      break;
    }
  }

  if ( !matchFound && maxVal == 0. )
  {
    return method == MergeIdenticalAttribute ? true : false;
  }


  // Remove polygon from source geometry
  deleteFeatureGeometryPart( feature, partIdx, changes );
  if ( mergeFeature.id() == feature.id() && mergePartIdx > partIdx )
  {
    --mergePartIdx;
  }

  // Merge geometries
  QgsAbstractGeometryV2* mergeGeom = mergeFeature.geometry()->geometry();
  QgsGeometryEngine* geomEngine = QgsGeomUtils::createGeomEngine( QgsGeomUtils::getGeomPart( mergeGeom, mergePartIdx ), QgsGeometryCheckPrecision::tolerance() );
  QgsAbstractGeometryV2* combinedGeom = geomEngine->combine( *QgsGeomUtils::getGeomPart( geom, partIdx ), &errMsg );
  delete geomEngine;
  if ( !combinedGeom || combinedGeom->isEmpty() )
  {
    return false;
  }
  replaceFeatureGeometryPart( mergeFeature, mergePartIdx, combinedGeom, changes );

  return true;
}
void QgsGeometryOverlapCheck::fixError( QgsGeometryCheckError* error, int method, int /*mergeAttributeIndex*/, Changes &changes ) const
{
  QString errMsg;
  QgsGeometryOverlapCheckError* overlapError = static_cast<QgsGeometryOverlapCheckError*>( error );

  QgsFeature feature;
  QgsFeature otherFeature;
  if ( !mFeaturePool->get( error->featureId(), feature ) ||
       !mFeaturePool->get( overlapError->otherId(), otherFeature ) )
  {
    error->setObsolete();
    return;
  }
  QgsAbstractGeometryV2* geom = feature.geometry()->geometry();
  QgsGeometryEngine* geomEngine = QgsGeomUtils::createGeomEngine( geom, QgsGeometryCheckPrecision::tolerance() );

  // Check if error still applies
  if ( !geomEngine->overlaps( *otherFeature.geometry()->geometry() ) )
  {
    delete geomEngine;
    error->setObsolete();
    return;
  }
  QgsAbstractGeometryV2* interGeom = geomEngine->intersection( *otherFeature.geometry()->geometry(), &errMsg );
  delete geomEngine;
  if ( !interGeom )
  {
    error->setFixFailed( tr( "Failed to compute intersection between overlapping features: %1" ).arg( errMsg ) );
    return;
  }

  // Search which overlap part this error parametrizes (using fuzzy-matching of the area and centroid...)
  QgsAbstractGeometryV2* interPart = nullptr;
  for ( int iPart = 0, nParts = interGeom->partCount(); iPart < nParts; ++iPart )
  {
    QgsAbstractGeometryV2* part = QgsGeomUtils::getGeomPart( interGeom, iPart );
    if ( qAbs( part->area() - overlapError->value().toDouble() ) < QgsGeometryCheckPrecision::reducedTolerance() &&
         QgsGeomUtils::pointsFuzzyEqual( part->centroid(), overlapError->location(), QgsGeometryCheckPrecision::reducedTolerance() ) )
    {
      interPart = part;
      break;
    }
  }
  if ( !interPart || interPart->isEmpty() )
  {
    delete interGeom;
    error->setObsolete();
    return;
  }

  // Fix error
  if ( method == NoChange )
  {
    error->setFixed( method );
  }
  else if ( method == Subtract )
  {
    geomEngine = QgsGeomUtils::createGeomEngine( geom, QgsGeometryCheckPrecision::reducedTolerance() );
    QgsAbstractGeometryV2* diff1 = geomEngine->difference( *interPart, &errMsg );
    delete geomEngine;
    if ( !diff1 || diff1->isEmpty() )
    {
      delete diff1;
      diff1 = nullptr;
    }
    else
    {
      QgsGeomUtils::filter1DTypes( diff1 );
    }
    QgsGeometryEngine* otherGeomEngine = QgsGeomUtils::createGeomEngine( otherFeature.geometry()->geometry(), QgsGeometryCheckPrecision::reducedTolerance() );
    QgsAbstractGeometryV2* diff2 = otherGeomEngine->difference( *interPart, &errMsg );
    delete otherGeomEngine;
    if ( !diff2 || diff2->isEmpty() )
    {
      delete diff2;
      diff2 = nullptr;
    }
    else
    {
      QgsGeomUtils::filter1DTypes( diff2 );
    }
    double shared1 = diff1 ? QgsGeomUtils::sharedEdgeLength( diff1, interPart, QgsGeometryCheckPrecision::reducedPrecision() ) : 0;
    double shared2 = diff2 ? QgsGeomUtils::sharedEdgeLength( diff2, interPart, QgsGeometryCheckPrecision::reducedPrecision() ) : 0;
    if ( shared1 == 0. || shared2 == 0. )
    {
      error->setFixFailed( tr( "Could not find shared edges between intersection and overlapping features" ) );
    }
    else
    {
      if ( shared1 < shared2 )
      {
        feature.setGeometry( new QgsGeometry( diff1 ) );

        changes[feature.id()].append( Change( ChangeFeature, ChangeChanged ) );
        mFeaturePool->updateFeature( feature );

        delete diff2;
      }
      else
      {
        otherFeature.setGeometry( new QgsGeometry( diff2 ) );

        changes[otherFeature.id()].append( Change( ChangeFeature, ChangeChanged ) );
        mFeaturePool->updateFeature( otherFeature );

        delete diff1;
      }

      error->setFixed( method );
    }
  }
  else
  {
    error->setFixFailed( tr( "Unknown method" ) );
  }
  delete interGeom;
}