bool
RenderExtension::isInUse(SBMLDocument *doc) const
{
if (doc == NULL || doc->getModel() == NULL) return false;
LayoutModelPlugin* plugin = (LayoutModelPlugin*)doc->getModel()->getPlugin("layout");
if (plugin == NULL || plugin->getNumLayouts() == 0) return false;
RenderListOfLayoutsPlugin* lolPlugin = (RenderListOfLayoutsPlugin*) plugin->getListOfLayouts()->getPlugin("render");
if (lolPlugin != NULL && lolPlugin->getNumGlobalRenderInformationObjects() > 0) return true;
for(int i = 0; i < plugin->getNumLayouts(); i++)
{
Layout* layout = plugin->getLayout(i);
RenderLayoutPlugin* rPlugin = (RenderLayoutPlugin*)layout->getPlugin("render");
if (rPlugin != NULL && rPlugin->getNumLocalRenderInformationObjects() > 0) return true;
}
return false;
}
//static
CLayout * SBMLDocumentLoader::createLayout(const Layout & sbmlLayout,
const std::map<std::string, std::string> & modelmap,
std::map<std::string, std::string> & layoutmap
#ifdef USE_CRENDER_EXTENSION
, const std::map<std::string, std::string>& globalIdToKeyMap
//,const std::map<std::string,std::map<std::string,std::string> >& globalColorIdToKeyMapMap
//,const std::map<std::string,std::map<std::string,std::string> >& globalGradientIdToKeyMapMap
//,const std::map<std::string,std::map<std::string,std::string> >& globalLineEndingIdToKeyMapMap
#endif /* USE_CRENDER_EXTENSION */
, const CCopasiContainer * pParent
)
{
CLayout* layout = new CLayout(sbmlLayout, layoutmap, pParent);
//compartments
unsigned C_INT32 i, iMax = sbmlLayout.getListOfCompartmentGlyphs()->size();
for (i = 0; i < iMax; ++i)
{
const CompartmentGlyph* tmp
= dynamic_cast<const CompartmentGlyph*>(sbmlLayout.getListOfCompartmentGlyphs()->get(i));
if (tmp)
layout->addCompartmentGlyph(new CLCompartmentGlyph(*tmp, modelmap, layoutmap));
}
//species
iMax = sbmlLayout.getListOfSpeciesGlyphs()->size();
for (i = 0; i < iMax; ++i)
{
const SpeciesGlyph* tmp
= dynamic_cast<const SpeciesGlyph*>(sbmlLayout.getListOfSpeciesGlyphs()->get(i));
if (tmp)
layout->addMetaboliteGlyph(new CLMetabGlyph(*tmp, modelmap, layoutmap));
}
//reactions
iMax = sbmlLayout.getListOfReactionGlyphs()->size();
for (i = 0; i < iMax; ++i)
{
const ReactionGlyph* tmp
= dynamic_cast<const ReactionGlyph*>(sbmlLayout.getListOfReactionGlyphs()->get(i));
if (tmp)
layout->addReactionGlyph(new CLReactionGlyph(*tmp, modelmap, layoutmap));
}
//text
iMax = sbmlLayout.getListOfTextGlyphs()->size();
for (i = 0; i < iMax; ++i)
{
const TextGlyph* tmp
= dynamic_cast<const TextGlyph*>(sbmlLayout.getListOfTextGlyphs()->get(i));
if (tmp)
layout->addTextGlyph(new CLTextGlyph(*tmp, modelmap, layoutmap));
}
//additional
iMax = sbmlLayout.getListOfAdditionalGraphicalObjects()->size();
for (i = 0; i < iMax; ++i)
{
const GraphicalObject* graphical
= dynamic_cast<const GraphicalObject*>(sbmlLayout.getListOfAdditionalGraphicalObjects()->get(i));
if (graphical)
layout->addGeneralGlyph(new CLGeneralGlyph(*graphical, modelmap, layoutmap));
}
//second pass text (the text glyph can refer to other glyphs. These references can)
//only be resolved after all glyphs are created).
iMax = sbmlLayout.getListOfTextGlyphs()->size();
for (i = 0; i < iMax; ++i)
{
const TextGlyph* tmp
= dynamic_cast<const TextGlyph*>(sbmlLayout.getListOfTextGlyphs()->get(i));
if (tmp)
postprocessTextGlyph(*tmp, layoutmap);
}
#ifdef USE_CRENDER_EXTENSION
RenderLayoutPlugin* rlPlugin = (RenderLayoutPlugin*) sbmlLayout.getPlugin("render");
assert(rlPlugin != NULL);
// import the local render information
iMax = rlPlugin->getNumLocalRenderInformationObjects();
std::map<std::string, std::string> idToKeyMap;
CLLocalRenderInformation* pLRI = NULL;
//std::map<std::string,std::string> colorIdToKeyMap;
//std::map<std::string,std::string> gradientIdToKeyMap;
//std::map<std::string,std::string> lineEndingIdToKeyMap;
//std::map<std::string,std::map<std::string,std::string> > colorIdToKeyMapMap;
//std::map<std::string,std::map<std::string,std::string> > gradientIdToKeyMapMap;
//std::map<std::string,std::map<std::string,std::string> > lineEndingIdToKeyMapMap;
for (i = 0; i < iMax; ++i)
{
//colorIdToKeyMap.clear();
//gradientIdToKeyMap.clear();
//lineEndingIdToKeyMap.clear();
//pLRI=new CLLocalRenderInformation(*sbmlLayout.getRenderInformation(i),colorIdToKeyMap,gradientIdToKeyMap,lineEndingIdToKeyMap,layout);
pLRI = new CLLocalRenderInformation(*rlPlugin->getRenderInformation(i), layout);
if (rlPlugin->getRenderInformation(i)->isSetId())
idToKeyMap.insert(std::pair<std::string, std::string>(rlPlugin->getRenderInformation(i)->getId(), pLRI->getKey()));
else
idToKeyMap.insert(std::pair<std::string, std::string>(pLRI->getKey(), pLRI->getKey()));
//colorIdToKeyMapMap.insert(std::pair<std::string,std::map<std::string,std::string> >(pLRI->getKey(),colorIdToKeyMap));
//gradientIdToKeyMapMap.insert(std::pair<std::string,std::map<std::string,std::string> >(pLRI->getKey(),gradientIdToKeyMap));
//lineEndingIdToKeyMapMap.insert(std::pair<std::string,std::map<std::string,std::string> >(pLRI->getKey(),lineEndingIdToKeyMap));
// fix the references to layout objects in id lists
size_t j, jMax = pLRI->getNumStyles();
for (j = 0; j < jMax; j++)
{
SBMLDocumentLoader::convertLayoutObjectIds(*(pLRI->getStyle(j)), layoutmap);
}
layout->addLocalRenderInformation(pLRI);
}
// fix the references
// we have to consider the global ids as well
// since all ids in these two map should be unique, we can just combine them
size_t count = idToKeyMap.size() + globalIdToKeyMap.size();
idToKeyMap.insert(globalIdToKeyMap.begin(), globalIdToKeyMap.end());
// make sure the ids were really unique
assert(idToKeyMap.size() == count);
SBMLDocumentLoader::convertRenderInformationReferencesIds<CLLocalRenderInformation>(layout->getListOfLocalRenderInformationObjects(), idToKeyMap);
// fix the color ids, gradient ids and line ending ids.
/*
std::map<std::string,std::map<std::string,std::string> >::const_iterator mapPos;
std::map<std::string,std::map<std::string,std::string> > expandedColorIdToKeyMapMap, expandedGradientIdToKeyMapMap, expandedLineEndingIdToKeyMapMap;
for(i=0;i < iMax; ++i)
{
pLRI=dynamic_cast<CLLocalRenderInformation*>(layout->getRenderInformation(i));
assert(pLRI != NULL);
std::set<std::string> chain;
SBMLDocumentLoader::expandIdToKeyMaps<CLLocalRenderInformation>(pLRI,
layout->getListOfLocalRenderInformationObjects(),
expandedColorIdToKeyMapMap,
expandedGradientIdToKeyMapMap,
expandedLineEndingIdToKeyMapMap,
colorIdToKeyMapMap,
gradientIdToKeyMapMap,
lineEndingIdToKeyMapMap,
chain,
globalColorIdToKeyMapMap,
globalGradientIdToKeyMapMap,
globalLineEndingIdToKeyMapMap
);
SBMLDocumentLoader::convertPropertyKeys<CLLocalRenderInformation>(pLRI,expandedColorIdToKeyMapMap[pLRI->getKey()],expandedGradientIdToKeyMapMap[pLRI->getKey()],expandedLineEndingIdToKeyMapMap[pLRI->getKey()]);
}
*/
#endif /* USE_CRENDER_EXTENSION */
return layout;
}
