static void runCSL(const CSLOptions& opt) { SVLocusSet set; set.load(opt.graphFilename.c_str()); set.finalize(); set.checkState(true,true); }
static void runCSL(const CSLOptions& opt) { log_os << "INFO: loading graph: " << opt.graphFilename << "\n"; SVLocusSet set; set.load(opt.graphFilename.c_str()); log_os << "INFO: cleaning/finalizing graph: " << opt.graphFilename << "\n"; set.finalize(); log_os << "INFO: checking cleaned graph: " << opt.graphFilename << "\n"; set.checkState(true,true); log_os << "INFO: finished checking graph: " << opt.graphFilename << "\n"; }