int StoichiometryMath::removeFromParentAndDelete()
{
SBase* parent = getParentSBMLObject();
if (parent==NULL) return LIBSBML_OPERATION_FAILED;
SpeciesReference* parentSR = static_cast<SpeciesReference*>(parent);
if (parentSR == NULL) return LIBSBML_OPERATION_FAILED;
return parentSR->unsetStoichiometryMath();
}
void dealWithAssigningL1Stoichiometry(Model & m, bool l2)
{
//char newid[15];
std::string id;
for (unsigned int i = 0; i < m.getNumReactions(); i++)
{
Reaction *r = m.getReaction(i);
unsigned int j;
for (j = 0; j < r->getNumReactants(); j++)
{
SpeciesReference *sr = r->getReactant(j);
// we do not get here unless the stoichiometryMath is an integer
// or a rational
if (l2 == true && sr->isSetStoichiometryMath() == true)
{
const ASTNode* ast = sr->getStoichiometryMath()->getMath();
if (ast->isInteger())
{
int num = ast->getInteger();
sr->setStoichiometry(num);
sr->setDenominator(1);
}
else
{
int num = ast->getNumerator();
int denom = ast->getDenominator();
sr->setStoichiometry(num);
sr->setDenominator(denom);
}
sr->unsetStoichiometryMath();
}
else
{
sr->setStoichiometry(sr->getStoichiometry());
sr->setDenominator(1);
}
}
for (j = 0; j < r->getNumProducts(); j++)
{
SpeciesReference *sr = r->getProduct(j);
// we do not get here unless the stoichiometryMath is an integer
// or a rational
if (l2 == true && sr->isSetStoichiometryMath() == true)
{
const ASTNode* ast = sr->getStoichiometryMath()->getMath();
if (ast->isInteger())
{
int num = ast->getInteger();
sr->setStoichiometry(num);
sr->setDenominator(1);
}
else
{
int num = ast->getNumerator();
int denom = ast->getDenominator();
sr->setStoichiometry(num);
sr->setDenominator(denom);
}
sr->unsetStoichiometryMath();
}
else
{
sr->setStoichiometry(sr->getStoichiometry());
sr->setDenominator(1);
}
}
}
}