void FolderWindow::SetStructures(int folderIndex)
{
StructureManager* structureManager = RNAStructViz::GetInstance()->GetStructureManager();
Folder* folder = structureManager->GetFolderAt(folderIndex);
m_folderIndex = folderIndex;
int shift = 0;
for( int ui = 0; ui < folder->structCount; ui++)
{
if(folder->folderStructs[(ui+shift)] == -1)
{
shift++;
}
int i = folder->folderStructs[(ui+shift)];
RNAStructure *strct = structureManager->GetStructure(i);
AddStructure(strct->GetFilename(), i);
}
label(folder->folderName);
char structLabel[MAX_BUFFER_SIZE];
snprintf(structLabel, MAX_BUFFER_SIZE - 1, " \n\n\n\n\n%s", folder->folderName);
ConfigParser::nullTerminateString(structLabel);
copy_label(structLabel);
labelsize(1.25 * LOCAL_TEXT_SIZE);
align(FL_ALIGN_TOP);
}
void FolderWindow::SetStructures(int folderIndex)
{
StructureManager* structureManager = RNAStructViz::GetInstance()->GetStructureManager();
Folder* folder = structureManager->GetFolderAt(folderIndex);
m_folderIndex = folderIndex;
int shift = 0;
for( int ui = 0; ui < folder->structCount; ui++)
{
if(folder->folderStructs[(ui+shift)] == -1)
{
shift++;
}
int i = folder->folderStructs[(ui+shift)];
RNAStructure *strct = structureManager->GetStructure(i);
AddStructure(strct->GetFilename(), i);
}
this->label(folder->folderName);
/*sprintf(title, "Folder: %-.48s", structureManager->GetFolderAt(folderIndex)->folderName);
label(title);*/
}
/*May not be quite right, modified from orignial code*/
void StatsWindow::ClearTruthValues()
{
StructureManager* structureManager = RNAStructViz::GetInstance()->GetStructureManager();
Folder* folder = structureManager->GetFolderAt(folderIndex);
int shift = 0;
for(int i = 0; i < folder->structCount; i++)
{
if(folder->folderStructs[(i + shift)] == -1)
shift++;
if(folder->folderStructs[(i + shift)] != -1)
{
RNAStructure *structure = structureManager->GetStructure((i+shift));
if(!structure)
continue;
int length = structure->GetLength();
for (int j = 0; j < length; ++j)
{
structure->GetBaseAt(j)->m_truth = RNAStructure::TruePositive;
}
}
}
}
/*May not be quite right, modified from orignial code*/
void StatsWindow::UpdateTruthValues()
{
if (referenceIndex == -1)
{
ClearTruthValues();
return;
}
StructureManager* structureManager = RNAStructViz::GetInstance()->GetStructureManager();
Folder* folder = structureManager->GetFolderAt(folderIndex);
RNAStructure* refStructure = structureManager->GetStructure(referenceIndex);
int length = refStructure->GetLength();
for (int j = 0; j < length; ++j)
{
refStructure->GetBaseAt(j)->m_truth = RNAStructure::TruePositive;
}
int shift = 0;
for (int i = 0; i < folder->structCount; ++i)
{
if(folder->folderStructs[(i + shift)] == -1)
shift++;
if(folder->folderStructs[(i + shift)] != -1)
{
RNAStructure* otherStructure = structureManager->GetStructure((i+shift));
if (!otherStructure || otherStructure == refStructure)
continue;
for (int j = 0; j < length; ++j)
{
RNAStructure::BaseData* refBase = refStructure->GetBaseAt(j);
RNAStructure::BaseData* otherBase = otherStructure->GetBaseAt(j);
if (refBase->m_pair == RNAStructure::UNPAIRED)
{
if (otherBase->m_pair == RNAStructure::UNPAIRED)
{
otherBase->m_truth = RNAStructure::TrueNegative;
}
else
{
otherBase->m_truth = RNAStructure::FalsePositive;
}
}
else
{
if (otherBase->m_pair == RNAStructure::UNPAIRED)
{
otherBase->m_truth = RNAStructure::FalseNegative;
}
else if (otherBase->m_pair == refBase->m_pair)
{
otherBase->m_truth = RNAStructure::TruePositive;
}
else
{
otherBase->m_truth = RNAStructure::FalsePositive;
}
}
}
}
}
}
InputWindow::InputWindow(int w, int h, const char *label,
const char *defaultName, InputWindowType type, int folderIndex) :
Fl_Window(MAX(w, 445), h, label), cbUseDefaultNames(NULL), ctFileChooser(NULL),
userWindowStatus(OK), fileSelectionIndex(-1)
{
string = (char*)malloc(sizeof(char)*90);
color(GUI_WINDOW_BGCOLOR);
set_modal();
windowType = type;
inputText = (char *) malloc(MAX_BUFFER_SIZE * sizeof(char));
if(type == InputWindow::FILE_INPUT) {
strncpy(inputText, defaultName, MAX_BUFFER_SIZE - 1);
inputText[MAX_BUFFER_SIZE - 1] = '\0';
char *extPtr = strrchr(inputText, '.');
if(extPtr != NULL) {
*extPtr = '\0';
}
char *filenameStartPtr = strrchr(inputText, '/');
int fnameStartPos;
if(filenameStartPtr != NULL) {
fnameStartPos = filenameStartPtr - inputText;
}
else {
fnameStartPos = 0;
}
char saveDirInfo[MAX_BUFFER_SIZE];
snprintf(saveDirInfo, fnameStartPos + 1, "%s", inputText);
sprintf(string, "Export to Directory: %s", saveDirInfo);
input = new Fl_Input(25, 50, 235, 30);
input->when(FL_WHEN_ENTER_KEY);
input->value(filenameStartPtr + 1);
Fl_Box *box = new Fl_Box(110, 20, 100, 30, (const char*)string);
box->box(FL_NO_BOX);
box->align(FL_ALIGN_CENTER);
Fl_Box *fileExtBox = new Fl_Box(260,50,30,30,".csv");
Fl_Button *button = new Fl_Button(305, 50, 110, 30, "Export to CSV @->");
button->callback(InputCallback, (void*)0);
button->set_active();
input->callback(InputCallback, (void*)0);
callback(CloseCallback);
}
else if(type == InputWindow::FOLDER_INPUT) {
std::string actualStructName =
ExtractStructureNameFromCTName(defaultName);
const char *actualStructNameCStr = actualStructName.c_str();
strncpy(inputText, actualStructNameCStr, actualStructName.size() + 1);
ConfigParser::nullTerminateString(inputText, actualStructName.size());
sprintf(string, "Creating new folder for the CT structure %s", defaultName);
input = new Fl_Input(160, 50, 250, 30, "@fileopen New Folder Name:");
input->when(FL_WHEN_ENTER_KEY);
input->maximum_size(60);
input->value(inputText);
input->color(GUI_BGCOLOR);
input->textcolor(GUI_BTEXT_COLOR);
Fl_Box *box = new Fl_Box(50, 1, 350, 40, (const char*) string);
box->box(FL_OSHADOW_BOX);
box->align(FL_ALIGN_CENTER | FL_ALIGN_INSIDE | FL_ALIGN_WRAP);
box->color(GUI_BGCOLOR);
box->labelcolor(GUI_BTEXT_COLOR);
Fl_Button *button = new Fl_Button(340, 50, 100, 30, "Add Folder @|>");
button->callback(InputCallback, (void*)0);
button->labelcolor(GUI_BTEXT_COLOR);
button->set_active();
input->callback(InputCallback, (void*)0);
input->labelcolor(GUI_TEXT_COLOR);
const char *cbText = " Use only default names for structure folders";
cbUseDefaultNames = new Fl_Check_Button(30, 100, 375, 30, cbText);
cbUseDefaultNames->box(FL_ROUND_UP_BOX);
cbUseDefaultNames->color(GUI_BGCOLOR);
cbUseDefaultNames->labelcolor(GUI_BTEXT_COLOR);
cbUseDefaultNames->down_color(GUI_WINDOW_BGCOLOR);
cbUseDefaultNames->align(FL_ALIGN_LEFT | FL_ALIGN_INSIDE | FL_ALIGN_CENTER);
callback(CloseCallback);
}
else {
const char *windowDisplayMsg = "Which CT file structure for the organism\ndo you want to display?";
Fl_Box *box = new Fl_Box(75, 5, 300, 40, windowDisplayMsg);
box->box(FL_RSHADOW_BOX);
box->align(FL_ALIGN_CENTER | FL_ALIGN_INSIDE | FL_ALIGN_WRAP);
box->color(GUI_BGCOLOR);
box->labelcolor(GUI_BTEXT_COLOR);
Fl_Button *displayButton = new Fl_Button(100, 100, 200, 30, "Display Zoomed Region @|>");
displayButton->callback(DisplayCTFileCallback, (void*)0);
displayButton->color(GUI_BGCOLOR);
displayButton->labelcolor(GUI_BTEXT_COLOR);
displayButton->set_active();
//displayButton->shortcut(FL_Enter);
Fl_Button *cancelButton = new Fl_Button(310, 100, 75, 30, "Cancel @1+");
cancelButton->callback(CancelCallback);
cancelButton->color(GUI_BGCOLOR);
cancelButton->labelcolor(GUI_BTEXT_COLOR);
ctFileChooser = new Fl_Choice(175, 55, 215, 30, "Choose CT Structure: ");
ctFileChooser->color(GUI_BGCOLOR);
ctFileChooser->labelcolor(GUI_BTEXT_COLOR);
StructureManager *structManager = RNAStructViz::GetInstance()->GetStructureManager();
Folder *curFolder = structManager->GetFolderAt(folderIndex);
for(int s = 0; s < curFolder->structCount; s++) {
RNAStructure *rnaStruct = structManager->GetStructure(curFolder->folderStructs[s]);
const char *ctFileName = rnaStruct->GetFilename();
ctFileChooser->add(ctFileName);
}
ctFileChooser->value(0);
}
show();
if(type != InputWindow::FOLDER_INPUT || !GUI_USE_DEFAULT_FOLDER_NAMES) {
show();
}
else {
show();
InputCallback((Fl_Widget *) cbUseDefaultNames, (void *) NULL);
}
}