bool
avtProgrammableOperation::avtVisItForEachLocationR::func(ProgrammableOpArguments& args, vtkShapedDataArray &result)
{
Variant windowArray = args.getArg(0);
vtkShapedDataArray var = args.getArgAsShapedDataArray(1);
Variant kernelName = args.getArg(2); //name of the function to call..
Variant primaryVariable = args.getArg(3); // primary variable name to modify..
std::vector<Variant> kernelArgs = args.getArgAsVariantVector(4);
avtPythonFilterEnvironment* environ = args.GetPythonEnvironment();
std::ostringstream rsetup;
rsetup << "import rpy2, rpy2.robjects\n"
<< kernelName.AsString() << " = rpy2.robjects.r('" << kernelName.AsString() << "')\n";
environ->Interpreter()->RunScript(rsetup.str());
std::string arglist = "";
for(int i = 0; i < kernelArgs.size(); ++i)
arglist += kernelArgs[i].ConvertToString() + (i == kernelArgs.size()-1 ? "" : ",");
std::ostringstream resultKernel;
resultKernel << "res = " << kernelName.AsString() << "(numpy.asarray(__internal_array)";
if(arglist.size() > 0)
resultKernel << "," << arglist << ")\n";
else
resultKernel << ")\n";
resultKernel << "res = numpy.asarray(res).tolist()\n";
/// run the time loop filter..
//std::cout << resultKernel << std::endl;
avtTimeWindowLoopFilter *filt = new avtTimeWindowLoopFilter;
filt->environment = args.GetPythonEnvironment();
filt->inputDataSet = args.GetInputDataSet();
filt->inputDomain = args.GetInputDomain();
filt->script = resultKernel.str();
filt->SetInput(args.GetInput());
avtDataObject_p dob = filt->GetOutput();
dob->Update(args.GetContract());
result = filt->globalOutputDataArray;
// result.shape = var.shape;
// result.vtkarray = var.vtkarray->NewInstance();
// result.vtkarray->DeepCopy(var.vtkarray);
return true;
}
bool
avtProgrammableOperation::avtVisItForEachLocation::func(ProgrammableOpArguments& args, vtkShapedDataArray& result)
{
Variant windowArray = args.getArg(0);
vtkShapedDataArray var = args.getArgAsShapedDataArray(1);
Variant kernelLanguage = args.getArg(2); //R or Python
Variant kernel = args.getArg(3); //kernel itself
Variant kernelName = args.getArg(4); //name of the function to call..
Variant primaryVariable = args.getArg(5); // primary variable name to modify..
std::vector<Variant> kernelArgs = args.getArgAsVariantVector(6);
avtPythonFilterEnvironment* environ = args.GetPythonEnvironment();
/// register the kernels..
if(kernelLanguage == "Python")
{
environ->Interpreter()->RunScript(kernel.AsString());
}
else
{
#ifdef HAVE_LIB_R
std::ostringstream rsetup;
rsetup << "import rpy2, rpy2.robjects\n"
<< kernelName.AsString() << " = rpy2.robjects.r(\"\"\"\n"
<< kernel.AsString() << "\n"
<< "\"\"\")\n";
environ->Interpreter()->RunScript(rsetup.str());
#else
std::cerr << "R is not supported at this time.." << std::endl;
return false;
#endif
}
std::string arglist = "";
for(int i = 0; i < kernelArgs.size(); ++i)
arglist += kernelArgs[i].ConvertToString() + (i == kernelArgs.size()-1 ? "" : ",");
std::ostringstream resultKernel;
resultKernel << "res = " << kernelName.AsString() << "(numpy.asarray(__internal_array)";
if(arglist.size() > 0)
resultKernel << "," << arglist << ")\n";
else
resultKernel << ")\n";
resultKernel << "res = numpy.asarray(res).tolist()\n";
/// std::cout << resultKernel.str() << std::endl;
/// run the time loop filter..
//std::cout << "disabling timer" << std::endl;
avtCallback::ResetTimeout(0);
avtTimeWindowLoopFilter *filt = new avtTimeWindowLoopFilter;
filt->environment = environ;
filt->inputDataSet = args.GetInputDataSet();
filt->inputDomain = args.GetInputDomain();
filt->script = resultKernel.str();
filt->SetInput(args.GetInput());
avtDataObject_p dob = filt->GetOutput();
dob->Update(args.GetContract());
avtCallback::ResetTimeout(5*60);
//std::cout << "enabling timer" << std::endl;
std::cout << PAR_Rank() << " finishing... " << std::endl;
std::cout << var.vtkarray->GetDataSize() << " "
<< filt->globalOutputDataArray.vtkarray->GetDataSize() << " "
<< filt->globalOutputDataArray.shape[0] << " "
<< filt->globalOutputDataArray.shape[1] << std::endl;
result = filt->globalOutputDataArray;
//result.shape.push_back(var->GetDataSize());
//result.vtkarray = var->NewInstance();
//result.vtkarray->DeepCopy(var);
return true;
}