void
affx::TsvFileDiff::p_diff_1line(affx::TsvFile& tsv1, affx::TsvFile& tsv2)
{
std::string val1,val2;
int tsv1_clvl=tsv1.lineLevel();
int tsv1_cidx_max=tsv1.getColumnCount(tsv1_clvl);
//
p_linenums(tsv1,tsv2);
printf("!");
//
for (int cidx=0;cidx<tsv1_cidx_max;cidx++) {
if (cidx!=0) {
printf("\t");
}
printf("\t");
tsv1.get(tsv1_clvl,cidx,val1);
tsv2.get(tsv1_clvl,cidx,val2);
if (val1==val2) {
printf("%s",val1.c_str());
}
else {
printf("'%s'/'%s'",val1.c_str(),val2.c_str());
}
}
printf("\n");
}
void affx::TsvFileDiff::p_line(affx::TsvFile& tsv) {
int clvl=tsv.lineLevel();
int cidx_max=tsv.getColumnCount(clvl);
std::string val;
//
for (int i=0;i<clvl;i++) {
printf("\t");
}
//
for (int cidx=0;cidx<cidx_max;cidx++) {
if (cidx!=0) {
printf("\t");
}
printf("\t");
tsv.get(clvl,cidx,val);
printf("%s",val.c_str());
}
printf("\n");
}
int
affx::TsvFileDiff::diffData(affx::TsvFile& tsv1, affx::TsvFile& tsv2)
{
int start_diff_cnt=m_diff_cnt;
std::string val1,val2;
//
open_residuals(m_residuals_filename,tsv1,tsv2);
//
tsv1.rewind();
tsv2.rewind();
//
tsv1.nextLine();
tsv2.nextLine();
//
while ((!tsv1.eof())||(!tsv2.eof())) {
//
int tsv1_clvl=tsv1.lineLevel();
int tsv2_clvl=tsv2.lineLevel();
//
while (((tsv1_clvl>tsv2_clvl)||tsv2.eof())&&(!tsv1.eof())) {
if (p_inc()) {
p_linenums(tsv1,tsv2);
printf("-");
p_line(tsv1);
}
m_diff_cnt+=tsv1.getColumnCount(tsv1_clvl);
tsv1.nextLine();
tsv1_clvl=tsv1.lineLevel();
}
//
while (((tsv2_clvl>tsv1_clvl)||tsv1.eof())&&(!tsv2.eof())) {
if (p_inc()) {
p_linenums(tsv1,tsv2);
printf("+");
p_line(tsv2);
}
m_diff_cnt+=tsv2.getColumnCount(tsv2_clvl);
tsv2.nextLine();
tsv2_clvl=tsv2.lineLevel();
}
//
if ((tsv1_clvl>=0)&&(tsv2_clvl>=0)) {
int tsv1_cidx_max=tsv1.getColumnCount(tsv1_clvl);
int tsv2_cidx_max=tsv2.getColumnCount(tsv2_clvl);
//
int cidx_max;
if (tsv1_cidx_max<tsv2_cidx_max) {
cidx_max=tsv2_cidx_max;
} else {
cidx_max=tsv1_cidx_max;
}
// count diffs on the line
int line_diff_cnt=0;
double d1,d2;
for (int cidx=0;cidx<cidx_max;cidx++) {
tsv1.get(tsv1_clvl,cidx,val1);
tsv2.get(tsv2_clvl,cidx,val2);
// the same?
if (val1==val2) {
// record the base value
if (m_residuals_tsv!=NULL) {
// numeric?
if (tsv1.get(tsv1_clvl,cidx,d1)==affx::TSV_OK) {
// put a zero
m_residuals_tsv->set(tsv1_clvl,cidx,"0");
} else {
// put the value
m_residuals_tsv->set(tsv1_clvl,cidx,val1);
}
}
}
// Not string equal -- check for numeric diff
else if ((tsv1.get(tsv1_clvl,cidx,d1)==affx::TSV_OK) &&
(tsv2.get(tsv2_clvl,cidx,d2)==affx::TSV_OK)) {
double d_diff=d1-d2;
// output the result...
if (m_residuals_tsv!=NULL) {
m_residuals_tsv->set(tsv1_clvl,cidx,d_diff);
}
// if small, it isnt a diff
if (!((m_opt_max_diff>0.0) && (fabs(d_diff)<=m_opt_max_diff))) {
// too big -- mark it down as a diff.
m_diff_cnt++;
line_diff_cnt++;
//
}
}
// normal text diff
else {
if (m_residuals_tsv!=NULL) {
m_residuals_tsv->set(tsv1_clvl,cidx,"'"+val1+"'/'"+val2+"'");
}
}
}
// output the result line
if (m_residuals_tsv!=NULL) {
m_residuals_tsv->writeLevel(tsv1_clvl);
}
// print unchanged lines?
if ((m_opt_print_same || (line_diff_cnt!=0)) &&
(p_inc())) {
//
if (line_diff_cnt==0) {
p_linenums(tsv1,tsv2);
printf(" ");
p_line(tsv1);
}
else if (m_opt_print_format==TsvFileDiff::FMT_1) {
p_diff_1line(tsv1,tsv2);
}
else if (m_opt_print_format==TsvFileDiff::FMT_2) {
p_diff_2line(tsv1,tsv2);
}
else {
Err::errAbort("Bad format");
}
}
}
//
tsv1.nextLine();
tsv2.nextLine();
}
close_residuals();
return m_diff_cnt-start_diff_cnt;
}
