typename Antioch::value_type<VectorScalar>::type k_photo(const VectorScalar &solar_lambda, const VectorScalar &solar_irr,
const VectorScalar &sigma_lambda, const VectorScalar &sigma_sigma)
{
Antioch::SigmaBinConverter<VectorScalar> bin;
VectorScalar sigma_rescaled(solar_lambda.size());
bin.y_on_custom_grid(sigma_lambda,sigma_sigma,solar_lambda,sigma_rescaled);
typename Antioch::value_type<VectorScalar>::type _k(0.L);
for(unsigned int il = 0; il < solar_irr.size() - 1; il++)
{
_k += sigma_rescaled[il] * solar_irr[il] * (solar_lambda[il+1] - solar_lambda[il]);
}
return _k;
}
int tester()
{
std::vector<Scalar> bin_ref_x,bin_ref_y;
make_reference(bin_ref_x,bin_ref_y);
Antioch::SigmaBinConverter<std::vector<Scalar> > bin;
const Scalar tol = std::numeric_limits<Scalar>::epsilon() * 10;
int return_flag = 0;
// 4 cases:
// - custom inside ref
// - ref inside custom
// - custom beyond only min ref
// - custom beyond only max ref
for(unsigned int i = 0; i < 4; i++)
{
std::vector<Scalar> bin_custom_x, exact_sol_y;
make_custom(i,bin_custom_x,exact_sol_y);
std::vector<Scalar> bin_custom_y(bin_custom_x.size());
bin.y_on_custom_grid(bin_ref_x,bin_ref_y,
bin_custom_x,bin_custom_y);
for(unsigned int il = 0; il < bin_custom_x.size() - 1; il++)
{
const Scalar dist = (exact_sol_y[il] < tol)?std::abs(bin_custom_y[il] - exact_sol_y[il]):std::abs(bin_custom_y[il] - exact_sol_y[il])/exact_sol_y[il];
if( dist > tol )
{
std::cout << std::scientific << std::setprecision(16)
<< "Error: Mismatch in bin values." << std::endl
<< "case (" << bin_custom_x[il] << ";" << bin_custom_x[il+1] << ")" << std::endl
<< "bin = " << bin_custom_y[il] << std::endl
<< "bin_exact = " << exact_sol_y[il] << std::endl
<< "relative error = " << dist << std::endl
<< "tolerance = " << tol << std::endl;
return_flag = 1;
}
}
}
return return_flag;
}
int vectester(const PairScalars& example, const std::string& testname)
{
typedef typename Antioch::value_type<PairScalars>::type Scalar;
std::vector<Scalar> bin_ref_x,bin_ref_y;
make_reference(bin_ref_x,bin_ref_y);
Antioch::SigmaBinConverter<std::vector<Scalar> > bin;
const Scalar tol = std::numeric_limits<Scalar>::epsilon() * 10;
int return_flag = 0;
#ifdef ANTIOCH_HAVE_GRVY
gt.BeginTimer(testname);
#endif
// 2 * 2 cases:
// - custom inside ref, ref inside custom
// - custom beyond only min ref, custom beyond only max ref
for(unsigned int i = 0; i < 2; i++)
{
std::vector<PairScalars> bin_custom_x, exact_sol_y;
make_custom(i,example,bin_custom_x,exact_sol_y);
std::vector<PairScalars> bin_custom_y(bin_custom_x.size(),Antioch::zero_clone(bin_custom_x[0]));
bin.y_on_custom_grid(bin_ref_x,bin_ref_y,
bin_custom_x,bin_custom_y);
for(unsigned int il = 0; il < bin_custom_x.size() - 1; il++)
{
for (unsigned int tuple=0; tuple != ANTIOCH_N_TUPLES; ++tuple)
{
//tuple
Scalar dist = Antioch::if_else(exact_sol_y[il][2*tuple] < tol,
std::abs(bin_custom_y[il][2*tuple] - exact_sol_y[il][2*tuple]),
std::abs(bin_custom_y[il][2*tuple] - exact_sol_y[il][2*tuple])/exact_sol_y[il][2*tuple]);
if( dist > tol )
{
std::cout << std::scientific << std::setprecision(16)
<< "Error: Mismatch in bin values for " << testname << std::endl
<< "case (" << bin_custom_x[il][2*tuple] << ";" << bin_custom_x[il + 1][2*tuple] << ")" << std::endl
<< "bin = " << bin_custom_y[il][2*tuple] << std::endl
<< "bin_exact = " << exact_sol_y[il][2*tuple] << std::endl
<< "relative error = " << dist << std::endl
<< "tolerance = " << tol << std::endl;
return_flag = 1;
}
//tuple + 1
dist = Antioch::if_else(exact_sol_y[il][2*tuple + 1] < tol,
std::abs(bin_custom_y[il][2*tuple + 1] - exact_sol_y[il][2*tuple + 1]),
std::abs(bin_custom_y[il][2*tuple + 1] - exact_sol_y[il][2*tuple + 1])/exact_sol_y[il][2*tuple + 1]);
if( dist > tol )
{
std::cout << std::scientific << std::setprecision(16)
<< "Error: Mismatch in bin values for " << testname << std::endl
<< "case (" << bin_custom_x[il][2*tuple + 1] << ";" << bin_custom_x[il+1][2*tuple + 1] << ")" << std::endl
<< "bin = " << bin_custom_y[il][2*tuple + 1] << std::endl
<< "bin_exact = " << exact_sol_y[il][2*tuple + 1] << std::endl
<< "relative error = " << dist << std::endl
<< "tolerance = " << tol << std::endl;
return_flag = 1;
}
}
}
}
#ifdef ANTIOCH_HAVE_GRVY
gt.EndTimer(testname);
#endif
return return_flag;
}
int tester(std::string path_to_files)
{
std::ifstream CH4(path_to_files + "/CH4_hv_cs.dat");
std::ifstream hv(path_to_files + "/solar_flux.dat");
std::string first_line;
getline(CH4,first_line);
getline(hv,first_line);
std::vector<Scalar> CH4_cs;
std::vector<Scalar> CH4_lambda;
std::vector<Scalar> hv_irr;
std::vector<Scalar> hv_lambda;
while(!CH4.eof())
{
Scalar cs,l;
CH4 >> l >> cs;
CH4_lambda.push_back(l);
CH4_cs.push_back(cs);
if(CH4_lambda.size() == 137)break;
}
CH4.close();
while(!hv.eof())
{
Scalar w,l,dw;
hv >> l >> w >> dw;
hv_lambda.push_back(l * 10.L); //nm -> Angström
hv_irr.push_back(w * 1e-4L // * 1e-4: m-2 -> cm-2
/ (Antioch::Constants::Planck_constant<Scalar>() * Antioch::Constants::light_celerity<Scalar>() / l)// /(h*c/lambda): energy -> number of photons
/ 10.); // by Angström
if(hv_lambda.size() == 796)break;
}
hv.close();
Scalar T(1500.L);
Antioch::PhotochemicalRate<Scalar, std::vector<Scalar> > rate_hv(CH4_cs,CH4_lambda);
Antioch::SigmaBinConverter<std::vector<Scalar> > bin;
std::vector<Scalar> sigma_rescaled;
bin.y_on_custom_grid(CH4_lambda,CH4_cs,hv_lambda,sigma_rescaled);
rate_hv.calculate_rate_constant(hv_irr, hv_lambda);
Scalar rate = rate_hv.rate(T);
const Scalar tol = std::numeric_limits<Scalar>::epsilon() * 100;
Scalar rate_exact(0.L);
for(unsigned int il = 0; il < hv_lambda.size() - 1; il++)
{
rate_exact += sigma_rescaled[il] * hv_irr[il] * (hv_lambda[il+1] - hv_lambda[il]);
}
int return_flag = (rate_exact == Scalar(0.L));
if(return_flag)std::cout << "Error: rate is null" << std::endl;
if( std::abs( (rate - rate_exact)/rate_exact ) > tol )
{
std::cout << std::scientific << std::setprecision(16)
<< "Error: Mismatch in rate values." << std::endl
<< "rate = " << rate << std::endl
<< "rate_exact = " << rate_exact << std::endl
<< "relative error = " << std::abs(rate_exact - rate)/rate_exact << std::endl
<< "tolerance = " << tol << std::endl;
return_flag = 1;
}
return return_flag;
}