void put(put_type & P) const
{
ReadEndsBase::put(P);
unsigned int const havep = ((p.get() != 0) ? 1 : 0);
unsigned int const haveq = ((q.get() != 0) ? 1 : 0);
uint64_t const numal = havep+haveq;
P.put(static_cast<uint8_t>(numal));
if ( havep )
p->serialise(P);
if ( haveq )
q->serialise(P);
}
void put(put_type & P) const
{
try
{
::libmaus::util::UTF8::encodeUTF8(this->libraryId,P);
::libmaus::util::UTF8::encodeUTF8(this->read1Sequence,P);
::libmaus::util::NumberSerialisation::serialiseSignedNumber(P,this->read1Coordinate);
P.put(static_cast<uint8_t>(this->orientation));
::libmaus::util::UTF8::encodeUTF8(this->read2Sequence,P);
::libmaus::util::NumberSerialisation::serialiseSignedNumber(P,this->read2Coordinate);
::libmaus::util::NumberSerialisation::serialiseNumber(P,this->read1IndexInFile);
::libmaus::util::NumberSerialisation::serialiseNumber(P,this->read2IndexInFile);
::libmaus::util::UTF8::encodeUTF8(this->score,P);
::libmaus::util::UTF8::encodeUTF8(this->readGroup,P);
::libmaus::util::UTF8::encodeUTF8(this->tile,P);
::libmaus::util::NumberSerialisation::serialiseNumber(P,this->x,2);
::libmaus::util::NumberSerialisation::serialiseNumber(P,this->y,2);
unsigned int const havep = ((p.get() != 0) ? 1 : 0);
unsigned int const haveq = ((q.get() != 0) ? 1 : 0);
uint64_t const numal = havep+haveq;
P.put(static_cast<uint8_t>(numal));
if ( havep )
p->serialise(P);
if ( haveq )
q->serialise(P);
}
catch(...)
{
// std::cerr << "Error while putting " << *this << std::endl;
throw;
}
}
/**
* reset object to invalid/empty state
**/
void reset()
{
ReadEndsBase::reset();
p.reset();
q.reset();
}
void reset()
{
memset(this,0,sizeof(*this));
p.reset();
q.reset();
}
