void removeSequence( const sp::Sequence& s )
{
std::ssize_t first;
std::ssize_t last;
if( selectRange )
{
first = std::max( s.getFirstTime(), firstImage );
last = std::min( s.getLastTime(), lastImage );
}
else
{
first = s.getFirstTime();
last = s.getLastTime();
}
// TUTTLE_TCOUT( "remove sequence." );
// TUTTLE_TCOUT("remove from " << first << " to " << last);
for( sp::Time t = first; t <= last; t += s.getStep() )
{
bfs::path sFile = s.getAbsoluteFilenameAt(t);
if( !bfs::exists( sFile ) )
{
TUTTLE_CERR("Could not remove (file not exist): " << _color._red << sFile.string() << _color._std );
}
else
{
if(verbose)
{
TUTTLE_COUT("remove: " << _color._folder << sFile.string() << _color._std );
}
try
{
bfs::remove( sFile );
}
catch(const boost::filesystem::filesystem_error& e)
{
// if( e.code() == boost::system::errc::permission_denied )
// "permission denied"
TUTTLE_CERR( "sam-rm: Error:\t\n" << e.what() );
/// @todo cin
// TUTTLE_COUT( "sam-rm: Continue ? (Yes/No/Yes for All/No for All)" );
}
}
}
}
void diffSequence(Graph::Node& read1, Graph::Node& read2, Graph::Node& stat, Graph& graph, const sp::Sequence& seq1, const sp::Sequence& seq2, const sp::Time first,
const sp::Time last) {
for (sp::Time t = first; t <= last; ++t) {
diffFile(read1, read2, stat, graph, seq1.getAbsoluteFilenameAt(t), seq2.getAbsoluteFilenameAt(t));
}
}
void copy_sequence( const sp::Sequence& s, const sp::Time firstImage, const sp::Time lastImage, const sp::Sequence& d, int offset = 0 )
{
sp::Time begin;
sp::Time end;
sp::Time step;
if (offset > 0) {
begin = lastImage;
end = firstImage;
step = -s.getStep();
} else {
begin = firstImage;
end = lastImage;
step = s.getStep();
}
for( sp::Time t = begin;
(offset > 0) ? (t >= end) :
(t <= end); t += step )
{
bfs::path sFile = s.getAbsoluteFilenameAt(t);
//TUTTLE_TLOG_VAR( TUTTLE_TRACE, sFile );
if( bfs::exists( sFile) )
{
bfs::path dFile = d.getAbsoluteFilenameAt(t + offset);
//TUTTLE_TLOG( TUTTLE_TRACE, "do " << sFile << " -> " << dFile );
#ifndef SAM_MOVEFILES // copy file(s)
if( bfs::exists(dFile) )
{
TUTTLE_LOG_ERROR( "Could not copy: " << dFile.string( ) );
}
else
{
try
{
//TUTTLE_LOG_TRACE( "copy " << sFile << " -> " << dFile );
bfs::copy_file(sFile, dFile);
}
catch (const bpo::error& e)
{
TUTTLE_LOG_ERROR( "error : " << e.what() );
}
catch (...)
{
TUTTLE_LOG_ERROR( boost::current_exception_diagnostic_information( ) );
}
}
#else // move file(s)
if( bfs::exists( dFile ) )
{
TUTTLE_LOG_ERROR( "Could not move: " << dFile.string( ) );
}
else
{
try
{
//TUTTLE_LOG_TRACE( "move " << sFile << " -> " << dFile );
bfs::rename( sFile, dFile );
}
catch( const bpo::error& e )
{
TUTTLE_LOG_ERROR( "error : " << e.what() );
}
catch( ... )
{
TUTTLE_LOG_ERROR( boost::current_exception_diagnostic_information( ) );
}
}
#endif
}
}
}
void diffSequence(Graph::Node& read1, Graph::Node& read2, Graph::Node& stat, Graph& graph, const sp::Sequence& seq1, const sp::Sequence& seq2) {
for (sp::Time t = seq1.getFirstTime(); t <= seq1.getLastTime(); ++t) {
diffFile(read1, read2, stat, graph, seq1.getAbsoluteFilenameAt(t), seq2.getAbsoluteFilenameAt(t));
}
}