// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
SharedVertexList::Pointer GEOM_CLASS_NAME::CreateSharedVertexList(int64_t numVertices)
{
QVector<size_t> vertDims(1, 3);
SharedVertexList::Pointer vertices = SharedVertexList::CreateArray(numVertices, vertDims, DREAM3D::Geometry::SharedVertexList);
vertices->initializeWithZeros();
return vertices;
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
int EdgeGeom::readGeometryFromHDF5(hid_t parentId, bool preflight)
{
herr_t err = 0;
SharedVertexList::Pointer vertices = GeometryHelpers::GeomIO::ReadListFromHDF5<SharedVertexList>(DREAM3D::Geometry::SharedVertexList, parentId, preflight, err);
SharedEdgeList::Pointer edges = GeometryHelpers::GeomIO::ReadListFromHDF5<SharedEdgeList>(DREAM3D::Geometry::SharedEdgeList, parentId, preflight, err);
if (edges.get() == NULL || vertices.get() == NULL)
{
return -1;
}
size_t numEdges = edges->getNumberOfTuples();
size_t numVerts = vertices->getNumberOfTuples();
FloatArrayType::Pointer edgeCentroids = GeometryHelpers::GeomIO::ReadListFromHDF5<FloatArrayType>(DREAM3D::StringConstants::EdgeCentroids, parentId, preflight, err);
if (err < 0 && err != -2)
{
return -1;
}
ElementDynamicList::Pointer edgeNeighbors = GeometryHelpers::GeomIO::ReadDynamicListFromHDF5<uint16_t, int64_t>(DREAM3D::StringConstants::EdgeNeighbors, parentId, numEdges, preflight, err);
if (err < 0 && err != -2)
{
return -1;
}
ElementDynamicList::Pointer edgesContainingVert = GeometryHelpers::GeomIO::ReadDynamicListFromHDF5<uint16_t, int64_t>(DREAM3D::StringConstants::EdgesContainingVert, parentId, numVerts, preflight, err);
if (err < 0 && err != -2)
{
return -1;
}
setVertices(vertices);
setEdges(edges);
setElementCentroids(edgeCentroids);
setElementNeighbors(edgeNeighbors);
setElementsContainingVert(edgesContainingVert);
return 1;
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GEOM_CLASS_NAME::setVertices(SharedVertexList::Pointer vertices)
{
if (vertices.get() != NULL)
{
if (vertices->getName().compare(DREAM3D::Geometry::SharedVertexList) != 0)
{
vertices->setName(DREAM3D::Geometry::SharedVertexList);
}
}
m_VertexList = vertices;
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
int VertexGeom::readGeometryFromHDF5(hid_t parentId, bool preflight)
{
herr_t err = 0;
SharedVertexList::Pointer vertices = SharedVertexList::NullPointer();
vertices = GeometryHelpers::GeomIO::ReadListFromHDF5<SharedVertexList>(DREAM3D::Geometry::SharedVertexList, parentId, preflight, err);
if (vertices.get() == NULL)
{
return -1;
}
setVertices(vertices);
return 1;
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void MakeDataContainer::dataCheck()
{
DataArrayPath tempPath;
setErrorCondition(0);
DataContainer::Pointer m = getDataContainerArray()->createNonPrereqDataContainer<AbstractFilter>(this, getDataContainerName());
if (getErrorCondition() < 0)
{
return;
}
QVector<size_t> tDims(3, 64);
AttributeMatrix::Pointer cellAttrMat = m->createNonPrereqAttributeMatrix<AbstractFilter>(this, getCellAttributeMatrixName(), tDims, DREAM3D::AttributeMatrixType::Cell);
if (getErrorCondition() < 0)
{
return;
}
// tDims.resize(1);
// tDims[0] = 0;
// AttributeMatrix::Pointer cellEnsembleAttrMat = m->createNonPrereqAttributeMatrix<AbstractFilter>(this, getCellEnsembleAttributeMatrixName(), tDims, DREAM3D::AttributeMatrixType::CellEnsemble);
// if(getErrorCondition() < 0)
// {
// return;
// }
QVector<size_t> dims(1, 1);
m_FeatureIdsPtr = cellAttrMat->createNonPrereqArray<DataArray<int32_t>, AbstractFilter, int32_t>(this, m_FeatureIdsArrayName, 0, dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{
m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); /* Now assign the raw pointer to data from the DataArray<T> object */
}
//ImageGeom::Pointer image = ImageGeom::CreateGeometry("TestImageGeom");
//image->setResolution(0.1f, 0.2f, 0.3f);
//image->setOrigin(100.3f, 987.234f, 0.0f);
//image->setDimensions(64, 64, 64);
//m->setGeometry(image);
VertexGeom::Pointer vertices = VertexGeom::CreateGeometry(100, "TestVertexGeom");
SharedVertexList::Pointer test = vertices->getVertices();
float* verts = test->getPointer(0);
for (int64_t i = 0; i < vertices->getNumberOfVertices(); i++)
{
verts[3 * i] = float(0.1 + i);
verts[3 * i + 1] = float(0.2 + i);
verts[3 * i + 2] = float(0.3 + i);
}
m->setGeometry(vertices);
}
void generate(size_t start, size_t end) const
{
float* nodes = m_Nodes->getPointer(0);
int64_t* triangles = m_Triangles->getPointer(0);
for (size_t i = start; i < end; i++)
{
m_Centroids[i * 3] = (nodes[triangles[i * 3] * 3 + 0] + nodes[triangles[i * 3 + 1] * 3 + 0] + nodes[triangles[i * 3 + 2] * 3 + 0]) / 3.0;
m_Centroids[i * 3 + 1] = (nodes[triangles[i * 3] * 3 + 1] + nodes[triangles[i * 3 + 1] * 3 + 1] + nodes[triangles[i * 3 + 2] * 3 + 1]) / 3.0;
m_Centroids[i * 3 + 2] = (nodes[triangles[i * 3] * 3 + 2] + nodes[triangles[i * 3 + 1] * 3 + 2] + nodes[triangles[i * 3 + 2] * 3 + 2]) / 3.0;
}
}
void generate(size_t start, size_t end) const
{
int64_t* triangles = m_Triangles->getPointer(0);
int64_t nIdx0 = 0, nIdx1 = 0, nIdx2 = 0;
float vecA[3] = { 0.0f, 0.0f, 0.0f };
float vecB[3] = { 0.0f, 0.0f, 0.0f };
float cross[3] = { 0.0f, 0.0f, 0.0f };
for (size_t i = start; i < end; i++)
{
nIdx0 = triangles[i * 3];
nIdx1 = triangles[i * 3 + 1];
nIdx2 = triangles[i * 3 + 2];
float* A = m_Nodes->getPointer(nIdx0 * 3);
float* B = m_Nodes->getPointer(nIdx1 * 3);
float* C = m_Nodes->getPointer(nIdx2 * 3);
MatrixMath::Subtract3x1s(A, B, vecA);
MatrixMath::Subtract3x1s(A, C, vecB);
MatrixMath::CrossProduct(vecA, vecB, cross);
float area = 0.5f * MatrixMath::Magnitude3x1(cross);
m_Areas[i] = area;
}
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
VertexGeom::Pointer VertexGeom::CreateGeometry(SharedVertexList::Pointer vertices, const QString& name)
{
if (name.isEmpty() == true)
{
return VertexGeom::NullPointer();
}
if (vertices.get() == NULL)
{
return VertexGeom::NullPointer();
}
VertexGeom* d = new VertexGeom();
d->setVertices(vertices);
d->setName(name);
Pointer ptr(d);
return ptr;
}
void generate(size_t start, size_t end) const
{
float* nodes = m_Nodes->getPointer(0);
int64_t* triangles = m_Triangles->getPointer(0);
int64_t nIdx0 = 0, nIdx1 = 0, nIdx2 = 0;
for (size_t i = start; i < end; i++)
{
nIdx0 = triangles[i * 3] * 3;
nIdx1 = triangles[i * 3 + 1] * 3;
nIdx2 = triangles[i * 3 + 2] * 3;
float* n0 = &(nodes[nIdx0]);
float* n1 = &(nodes[nIdx1]);
float* n2 = &(nodes[nIdx2]);
VectorType normal = TriangleOps::computeNormal(n0, n1, n2);
m_Normals[i * 3 + 0] = normal.x;
m_Normals[i * 3 + 1] = normal.y;
m_Normals[i * 3 + 2] = normal.z;
}
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
QuadGeom::Pointer QuadGeom::CreateGeometry(SharedQuadList::Pointer quads, SharedVertexList::Pointer vertices, const QString& name)
{
if (name.isEmpty() == true)
{
return NullPointer();
}
if (vertices.get() == NULL)
{
return QuadGeom::NullPointer();
}
if (quads.get() == NULL)
{
return QuadGeom::NullPointer();
}
QuadGeom* d = new QuadGeom();
d->setVertices(vertices);
d->setQuads(quads);
d->setName(name);
Pointer ptr(d);
return ptr;
}