static CONDITION
parseImageInstanceUID(DCM_OBJECT ** object, int *elementCount)
{
static DCM_FLAGGED_ELEMENT localList[] = {
{DCM_IDSOPINSTANCEUID, DCM_UI, "", 1, sizeof(q.Image.ImageUID), (void *) &q.Image.ImageUID[0], DB_K_QIMAGEUID, &q.Image.Query_Flag},
};
CONDITION cond;
DCM_ELEMENT e;
U32 l;
char *c;
int index;
cond = DCM_GetElementSize(object, DCM_IDSOPINSTANCEUID, &l);
if (cond != DCM_NORMAL) {
(void) COND_PopCondition(FALSE);
return IAP_NORMAL;
}
cond = DCM_GetElement(object, DCM_IDSOPINSTANCEUID, &e);
if (cond != DCM_NORMAL) {
(void) COND_PopCondition(FALSE);
return IAP_NORMAL;
}
if (e.multiplicity == 1) {
cond = DCM_ParseObject(object, NULL, 0, localList, (int) DIM_OF(localList), elementCount);
if (cond != DCM_NORMAL) return COND_PushCondition(IAP_OBJECTACCESSFAILED, IAP_Message(IAP_OBJECTACCESSFAILED), "parseImageInstanceUID");
q.Image.Query_Flag |= DB_K_QIMAGEUID;
q.Image.ImageMultUIDCount = 0;
q.Image.ImageMultUID = NULL;
}else{
c = malloc((l + 1) + (e.multiplicity * sizeof(char *)));
if (c == NULL) return COND_PushCondition(IAP_MALLOCFAILURE, IAP_Message(IAP_MALLOCFAILURE), (l + 1) + (e.multiplicity * sizeof(char *)), "parseImageInstanceUID");
q.Image.ImageMultUIDCount = e.multiplicity;
q.Image.ImageMultUID = (char **) c;
c += e.multiplicity * sizeof(char *);
e.d.string = c;
cond = DCM_ParseObject(object, &e, 1, NULL, 0, elementCount);
if (cond != DCM_NORMAL) return COND_PushCondition(IAP_OBJECTACCESSFAILED, IAP_Message(IAP_OBJECTACCESSFAILED), "parseImageInstanceUID");
for (index = 0; (unsigned long) index < e.multiplicity; index++) {
q.Image.ImageMultUID[index] = c;
while ((*c != '\\') && (*c != '\0')){
c++;
}
*c++ = '\0';
}
q.Image.Query_Flag |= DB_K_QIMAGEMULTUID;
}
return IAP_NORMAL;
}
CONDITION
DCM_DefaultFileMeta(DCM_OBJECT ** object, DCM_FILE_META ** fileMeta)
{
DCM_ELEMENT e[] = {
{DCM_IDSOPCLASSUID, DCM_UI, "", 1, DICOM_UI_LENGTH + 1, NULL},
{DCM_IDSOPINSTANCEUID, DCM_UI, "", 1, DICOM_UI_LENGTH + 1, NULL},
};
CONDITION cond;
*fileMeta = calloc(1, sizeof(DCM_FILE_META));
if (*fileMeta == NULL) return 0; /* repair */
memset((*fileMeta)->preamble, 0, sizeof((*fileMeta)->preamble));
(*fileMeta)->fileMetaInformationVersion[0] = 0x00;
(*fileMeta)->fileMetaInformationVersion[1] = 0x01;
e[0].d.string = (*fileMeta)->mediaStorageSOPClassUID;
e[1].d.string = (*fileMeta)->mediaStorageSOPInstanceUID;
cond = DCM_ParseObject(object, e, (int) DIM_OF(e), NULL, 0, NULL);
if (cond != DCM_NORMAL) return 0; /* repair */
strcpy((*fileMeta)->transferSyntaxUID, DICOM_TRANSFERLITTLEENDIAN);
strcpy((*fileMeta)->implementationClassUID, MIR_IMPLEMENTATIONCLASSUID);
strcpy((*fileMeta)->implementationVersionName, MIR_IMPLEMENTATIONVERSIONNAME);
(*fileMeta)->flag |= DCM_FILEMETA_IMPLEMENTATIONVERSIONNAME;
return DCM_NORMAL;
}
CONDITION
DDR_GetFileSetID(DCM_OBJECT ** obj, DDR_FILESETID * fileSetID)
{
static long flag;
DCM_ELEMENT e = {DCM_DIRFILESETID, DCM_CS, "", 1,
DICOM_CS_LENGTH + 1, NULL};
DCM_FLAGGED_ELEMENT optionalElements[] = {
{DCM_DIRFILESETDESCRFILEID, DCM_CS, "", 1,
DICOM_CS_LENGTH + 1, NULL, 0, &flag},
{DCM_DIRSPECIFICCHARACTER, DCM_CS, "", 1,
DICOM_CS_LENGTH + 1, NULL, 0, &flag}
};
CONDITION cond;
memset(fileSetID, 0, sizeof(fileSetID));
e.d.string = fileSetID->FileSetID;
optionalElements[0].e.d.string = fileSetID->DescriptorFileID;
optionalElements[1].e.d.string = fileSetID->SpecificCharacterSet;
cond = DCM_ParseObject(obj, &e, 1,
optionalElements, (int) DIM_OF(optionalElements), NULL);
if (cond != DCM_NORMAL)
return DDR_ERROR;
return DDR_NORMAL;
}
static CONDITION
addSeriesRecord(DCM_OBJECT ** seriesObject, LST_HEAD ** lst)
{
CONDITION cond;
DDR_SERIES record,
*seriesPtr;
DCM_ELEMENT required[] = {
{DCM_IDMODALITY, DCM_CS, "", 1, sizeof(record.Modality), NULL},
{DCM_RELSERIESINSTANCEUID, DCM_UI, "", 1,
sizeof(record.SeriesInstanceUID), NULL},
{DCM_RELSERIESNUMBER, DCM_IS, "", 1,
sizeof(record.SeriesNumber), NULL},
{DCM_DIRLOWERLEVELOFFSET, DCM_UL, "", 1,
sizeof(record.LeafLinkOffset), NULL}
};
required[0].d.string = record.Modality;
required[1].d.string = record.SeriesInstanceUID;
required[2].d.string = record.SeriesNumber;
required[3].d.ul = &record.LeafLinkOffset;
memset(&record, 0, sizeof(record));
cond = DCM_ParseObject(seriesObject, required,
(int) DIM_OF(required), NULL, 0, NULL);
if (cond != DCM_NORMAL) {
return 0; /* repair */
}
seriesPtr = malloc(sizeof(*seriesPtr));
if (seriesPtr == NULL) {
return 0; /* repair */
}
memcpy(seriesPtr, &record, sizeof(record));
LST_Enqueue(lst, seriesPtr);
return DDR_NORMAL;
}
CONDITION
IAP_ObjectToQuery(DCM_OBJECT ** object, char *SOPClass, Query * query, int *elementCount)
{
CONDITION cond, returnCondition;
int index;
void *ctx;
U32 l;
long flag;
static char queryLevelString[48] = ""; /* Initialize for AIX compiler bug */
DCM_ELEMENT queryLevelElement = {DCM_IDQUERYLEVEL, DCM_CS, "", 1, sizeof(queryLevelString), (void *) &queryLevelString[0]};
*elementCount = 0;
q.QueryState = 0;
q.Patient.Query_Flag = 0;
q.Study.Query_Flag = 0;
q.Series.Query_Flag = 0;
q.Image.Query_Flag = 0;
ctx = NULL;
returnCondition = IAP_NORMAL;
cond = DCM_GetElementValue(object, &queryLevelElement, &l, &ctx);
if (cond != DCM_NORMAL) {
if (cond == DCM_ILLEGALOBJECT){
return COND_PushCondition(IAP_ILLEGALOBJECT, "IAP_ObjectToQuery");
}else{
(void) COND_PopCondition(FALSE);
(void) COND_PushCondition(IAP_QUERYLEVELMISSING, "IAP_ObjectToQuery");
returnCondition = IAP_INCOMPLETEOBJECT;
}
}else{
queryLevelString[l] = '\0';
if (queryLevelString[l - 1] == ' ') queryLevelString[l - 1] = '\0';
for (index = 0; index < DIM_OF(levelMap); index++) {
if (strcmp(levelMap[index].queryLevel, queryLevelString) == 0) q.QueryState |= levelMap[index].flag;
}
}
flag = 0;
for (index = 0; index < DIM_OF(classMap); index++) {
if (strcmp(classMap[index].SOPClass, SOPClass) == 0) flag |= classMap[index].flag;
}
if (flag == 0) {
(void) COND_PushCondition(IAP_SOPCLASSMISSING, "");
returnCondition = IAP_INCOMPLETEOBJECT;
}
q.QueryState |= flag;
cond = DCM_ParseObject(object, NULL, 0, list, (int) DIM_OF(list), elementCount);
if (cond != DCM_NORMAL) return COND_PushCondition(IAP_OBJECTACCESSFAILED, IAP_Message(IAP_OBJECTACCESSFAILED), "IAP_ObjectToQuery");
cond = parseImageInstanceUID(object, elementCount);
if (cond != IAP_NORMAL) return cond;
*query = q;
return returnCondition;
}
static void* extractPixelsMONOCHROME2(DCM_OBJECT** obj, PARAMS *p)
{
void *pixels = NULL;
int byteCount;
int pixelCount;
DCM_ELEMENT e;
CONDITION cond;
pixelCount = p->rows * p->columns;
byteCount = p->rows * p->columns;
if (p->bitsAllocated > 8)
byteCount *= 2;
if (pixels == NULL) {
pixels = malloc(byteCount);
if (pixels == NULL) {
fprintf(stderr, "Could not allocated %d bytes for pixel data\n",
byteCount);
exit(7);
}
}
memset(&e, 0, sizeof(e));
e.tag = DCM_PXLPIXELDATA;
e.representation = DCM_OW;
e.length = byteCount;
e.d.ot = pixels;
cond = DCM_ParseObject(obj, &e, 1, NULL, 0, NULL);
if (cond != DCM_NORMAL && cond != DCM_GETINCOMPLETE) {
fprintf(stderr, "Could not extract pixels: %d %d %d %d\n",
p->rows, p->columns, p->bitsAllocated, byteCount);
COND_DumpConditions();
exit(8);
}
if (p->bitsAllocated == 8) {
unsigned char* p1;
U16* p2;
int index;
p2 = malloc(pixelCount * 2);
p1 = (unsigned char*) pixels;
for (index = 0; index < pixelCount; index++) {
p2[index] = p1[index];
}
free(pixels);
pixels = p2;
}
return pixels;
}
static U32
offsetNextRecord(DCM_OBJECT ** obj)
{
CONDITION cond;
U32 offset;
DCM_ELEMENT e = {DCM_DIRNEXTRECORDOFFSET, DCM_UL, "", 1,
sizeof(offset), NULL};
e.d.ul = &offset;
cond = DCM_ParseObject(obj, &e, 1, NULL, 0, NULL);
if (cond != DCM_NORMAL) {
return 0; /* repair */
}
return offset;
}
static void
addImageLeafAttributes(DCM_OBJECT ** leafObject, DDR_SERIES_LEAF * leaf)
{
CONDITION cond;
DCM_ELEMENT required[] = {
{DCM_RELIMAGENUMBER, DCM_IS, "", 1,
sizeof(leaf->specific.image.ImageNumber), NULL}
};
required[0].d.string = leaf->specific.image.ImageNumber;
cond = DCM_ParseObject(leafObject, required,
(int) DIM_OF(required), NULL, 0, NULL);
if (cond != DCM_NORMAL) {
COND_DumpConditions();
exit(1); /* repair */
}
}
static CONDITION
addLeafRecord(DCM_OBJECT ** leafObject, LST_HEAD ** lst)
{
CONDITION cond;
DDR_SERIES_LEAF record,
*leafPtr;
DCM_ELEMENT required[] = {
{DCM_DIRRECORDTYPE, DCM_CS, "", 1, sizeof(record.RecordType), NULL},
{DCM_DIRREFERENCEDFILEID, DCM_CS, "", 1,
sizeof(record.FileID), NULL},
{DCM_DIRREFSOPCLASSUID, DCM_UI, "", 1,
sizeof(record.SOPClassUID), NULL},
{DCM_DIRREFSOPINSTANCEUID, DCM_UI, "", 1,
sizeof(record.SOPInstanceUID), NULL},
{DCM_DIRREFTRANSFERSYNTAXUID, DCM_UI, "", 1,
sizeof(record.TransferSyntaxUID), NULL}
};
required[0].d.string = record.RecordType;
required[1].d.string = record.FileID;
required[2].d.string = record.SOPClassUID;
required[3].d.string = record.SOPInstanceUID;
required[4].d.string = record.TransferSyntaxUID;
memset(&record, 0, sizeof(record));
cond = DCM_ParseObject(leafObject, required,
(int) DIM_OF(required), NULL, 0, NULL);
if (cond != DCM_NORMAL) {
return 0; /* repair */
}
if (strcmp(record.RecordType, "IMAGE") == 0)
addImageLeafAttributes(leafObject, &record);
leafPtr = malloc(sizeof(*leafPtr));
if (leafPtr == NULL) {
return 0; /* repair */
}
memcpy(leafPtr, &record, sizeof(record));
LST_Enqueue(lst, leafPtr);
return DDR_NORMAL;
}
static CONDITION
addStudyRecord(DCM_OBJECT ** studyObject, LST_HEAD ** lst)
{
CONDITION cond;
DDR_STUDY record,
*studyPtr;
DCM_ELEMENT required[] = {
{DCM_IDSTUDYDATE, DCM_DA, "", 1, sizeof(record.StudyDate), NULL},
{DCM_IDSTUDYTIME, DCM_TM, "", 1, sizeof(record.StudyTime), NULL},
{DCM_IDSTUDYDESCRIPTION, DCM_LO, "", 1,
sizeof(record.StudyDescription), NULL},
{DCM_RELSTUDYINSTANCEUID, DCM_UI, "", 1,
sizeof(record.StudyInstanceUID), NULL},
{DCM_RELSTUDYID, DCM_SH, "", 1, sizeof(record.StudyID), NULL},
{DCM_IDACCESSIONNUMBER, DCM_SH, "", 1,
sizeof(record.AccessionNumber), NULL},
{DCM_DIRLOWERLEVELOFFSET, DCM_UL, "", 1,
sizeof(record.SeriesLinkOffset), NULL}
};
required[0].d.string = record.StudyDate;
required[1].d.string = record.StudyTime;
required[2].d.string = record.StudyDescription;
required[3].d.string = record.StudyInstanceUID;
required[4].d.string = record.StudyID;
required[5].d.string = record.AccessionNumber;
required[6].d.ul = &record.SeriesLinkOffset;
memset(&record, 0, sizeof(record));
cond = DCM_ParseObject(studyObject, required,
(int) DIM_OF(required), NULL, 0, NULL);
if (cond != DCM_NORMAL) {
return 0; /* repair */
}
studyPtr = malloc(sizeof(*studyPtr));
if (studyPtr == NULL) {
return 0; /* repair */
}
memcpy(studyPtr, &record, sizeof(record));
LST_Enqueue(lst, studyPtr);
return DDR_NORMAL;
}
static char* getString(DCM_OBJECT* obj, DCM_TAG tag)
{
DCM_ELEMENT e;
CONDITION cond;
memset(&e, 0, sizeof(e));
e.tag = tag;
cond = DCM_GetElement(&obj, tag, &e);
if (cond != DCM_NORMAL)
return 0;
e.d.string = malloc(e.length + 1);
cond = DCM_ParseObject(&obj, &e, 1, 0, 0, 0);
if (cond != DCM_NORMAL) {
COND_DumpConditions();
exit(1);
}
return e.d.string;
}
CONDITION
DDR_RootDirectory(DCM_OBJECT ** obj)
{
U32 offset = 0;
DCM_ELEMENT e = {DCM_DIRFIRSTOFFSET, DCM_UL, "", 1, sizeof(offset), NULL};
CONDITION cond;
#if 0
e.d.ul = &offset;
cond = DCM_ParseObject(obj, &e, 1, NULL, 0, NULL);
if (cond != DCM_NORMAL)
return DDR_ERROR;
cond = DCM_GetSequenceByOffset(obj, DCM_DIRRECORDSEQUENCE, offset);
#endif
return DDR_NORMAL;
}
CONDITION
DCM_GetFileMeta(DCM_OBJECT ** callerObject, DCM_FILE_META ** fileMeta)
{
CONDITION cond;
PRIVATE_OBJECT **object;
object = (PRIVATE_OBJECT **) callerObject;
cond = checkObject(object, "DCM_GetFileMeta");
if (cond != DCM_NORMAL) return cond;
memset(&meta, 0, sizeof(meta));
cond = DCM_ParseObject(callerObject, metaRequired, (int) DIM_OF(metaRequired), metaOptional, (int) DIM_OF(metaOptional), NULL);
if (cond != DCM_NORMAL) return cond; /* repair */
*fileMeta = CTN_MALLOC(sizeof(DCM_FILE_META));
if (*fileMeta == NULL) return 0; /* repair */
**fileMeta = meta;
return DCM_NORMAL;
}
CONDITION
HAP_ParseResults(DCM_OBJECT ** object, HIS_ResultsLevel * xl)
{
CONDITION cond;
int x;
memset(&p, 0, sizeof p);
cond = DCM_ParseObject(object, NULL, 0, list, (int) DIM_OF(list), NULL);
if (cond != DCM_NORMAL)
return HAP_ILLEGALOBJECT;
x = r_parseSequence(object);
if (x < 0)
return 0;
*xl = p;
return HAP_NORMAL;
}
CONDITION
HAP_ParseVisit(DCM_OBJECT ** object, HIS_VisitLevel * xl)
{
CONDITION cond;
int x;
memset(&p, 0, sizeof p);
cond = DCM_ParseObject(object, NULL, 0, list, (int) DIM_OF(list), NULL);
if (cond != DCM_NORMAL)
return HAP_ILLEGALOBJECT;
x = v_parseSequence(object);
if (x < 0)
return 0; /* needs repair */
*xl = p;
return HAP_NORMAL;
}
CONDITION
DDR_GetPatientList(DCM_OBJECT ** obj, LST_HEAD ** lst)
{
U32 offset = 0;
DCM_ELEMENT e = {DCM_DIRFIRSTOFFSET, DCM_UL, "", 1, sizeof(offset), NULL};
DCM_OBJECT *patObject;
CONDITION cond;
e.d.ul = &offset;
/*
* Find the first offset in the DICOMDIR object. That should point to a
* patient
*/
cond = DCM_ParseObject(obj, &e, 1, NULL, 0, NULL);
if (cond != DCM_NORMAL)
return DDR_ERROR;
/*
* Walk through the chain of patient records. Each time we find one,
* call another * function to parse that patient record and add it to the
* caller's list.
*/
while (offset != 0) {
cond = DCM_GetSequenceByOffset(obj, DCM_DIRRECORDSEQUENCE, offset,
&patObject);
if (cond != DCM_NORMAL) {
exit(1); /* repair */
}
addPatientRecord(&patObject, lst);
offset = offsetNextRecord(&patObject);
}
return DDR_NORMAL;
}
/* extractAccessionNumber
**
** Purpose:
** Extract the Accession number from a DICOM image file.
**
** Parameter Dictionary:
** file Name of the file
**
** Return Values:
** Accession number if found, else NULL
**
** Notes:
**
** Algorithm:
** Description of the algorithm (optional) and any other notes.
*/
static
char *
extractAccessionNumber(char *file)
{
DCM_OBJECT
* object = NULL;
DCM_ELEMENT
element;
CONDITION
cond;
cond = DCM_OpenFile(file, DCM_ORDERLITTLEENDIAN, &object);
if (cond != DCM_NORMAL) {
printf("DCM_Openfile failed on %s\n", file);
if (verbose == TRUE)
COND_DumpConditions();
return (NULL);
}
element.tag = DCM_IDACCESSIONNUMBER;
element.d.string = (char *) malloc(DICOM_CS_LENGTH + 1);
element.length = DICOM_CS_LENGTH + 1;
cond = DCM_LookupElement(&element);
if (cond != DCM_NORMAL) {
printf("DCM_LookupElement failed\n");
if (verbose == TRUE)
COND_DumpConditions();
return (NULL);
}
cond = DCM_ParseObject(&object, &element, 1, NULL, 0, NULL);
if (cond != DCM_NORMAL) {
printf("DCM Parse Object failed\n");
if (verbose == TRUE)
COND_DumpConditions();
return (NULL);
}
return (element.d.string);
}
static CONDITION
addPatientRecord(DCM_OBJECT ** patObject, LST_HEAD ** lst)
{
CONDITION cond;
DDR_PATIENT patientRecord,
*patientPtr;
DCM_ELEMENT required[] = {
{DCM_PATNAME, DCM_PN, "", 1, sizeof(patientRecord.PatientName), NULL},
{DCM_PATID, DCM_LO, "", 1, sizeof(patientRecord.PatientID), NULL},
{DCM_DIRLOWERLEVELOFFSET, DCM_UL, "", 1,
sizeof(patientRecord.StudyLinkOffset), NULL},
};
DCM_FLAGGED_ELEMENT optional[] = {
{DCM_PATBIRTHDATE, DCM_DA, "", 1, sizeof(patientRecord.BirthDate), NULL, 0, NULL},
{DCM_PATSEX, DCM_CS, "", 1, sizeof(patientRecord.Sex), NULL, 0, NULL}
};
required[0].d.string = patientRecord.PatientName;
required[1].d.string = patientRecord.PatientID;
required[2].d.ul = &patientRecord.StudyLinkOffset;
optional[0].e.d.string = patientRecord.BirthDate;
optional[0].flagAddress = &patientRecord.optionFlag;
optional[1].e.d.string = patientRecord.Sex;
optional[1].flagAddress = &patientRecord.optionFlag;
memset(&patientRecord, 0, sizeof(patientRecord));
cond = DCM_ParseObject(patObject, required, 3, optional, 2, NULL);
if (cond != DCM_NORMAL) {
return 0; /* repair */
}
patientPtr = malloc(sizeof(*patientPtr));
if (patientPtr == NULL) {
return 0; /* repair */
}
memcpy(patientPtr, &patientRecord, sizeof(patientRecord));
LST_Enqueue(lst, patientPtr);
return DDR_NORMAL;
}
static void* extractFPixelsMONOCHROME2(DCM_OBJECT** obj, PARAMS *p)
{
void *pixels = NULL;
void *fpixels = NULL;
int byteCount;
int pixelCount;
DCM_ELEMENT e;
CONDITION cond;
S16* p1; /* 16 bit pointer for Pixel Rep = 1 (pet) */
U16* p0; /* 16 bit data Pixel Rep = 0 (mr) */
float* pf; /* Pointer to the float data */
int index; /* pixel index */
pixelCount = p->rows * p->columns;
byteCount = p->rows * p->columns;
if (p->bitsAllocated > 8)byteCount *= 4; /* 4 bytes are in 32 bits */
if (pixels == NULL) {
pixels = malloc(byteCount); /* 16 bit pixels */
if (pixels == NULL) {
fprintf(stderr, "Could not allocated %d bytes for pixel data\n",
byteCount);
exit(7);
}
}
memset(&e, 0, sizeof(e));
e.tag = DCM_PXLPIXELDATA;
e.representation = DCM_OW;
e.length = byteCount;
e.d.ot = pixels;
cond = DCM_ParseObject(obj, &e, 1, NULL, 0, NULL);
if (cond != DCM_NORMAL && cond != DCM_GETINCOMPLETE) {
fprintf(stderr, "Could not extract pixels: %d %d %d %d\n",
p->rows, p->columns, p->bitsAllocated, byteCount);
COND_DumpConditions();
exit(8);
}
pf = malloc(pixelCount * sizeof(float));
p1 = pixels;
p0 = pixels;
if (p->pixelRepresentation == 1){
for (index = 0; index < pixelCount; index++) {
pf[index] = p1[index];
}
}else{
for (index = 0; index < pixelCount; index++) {
pf[index] = p0[index];
}
}
free(pixels);
fpixels = pf; /* fpixels now points to pf */
return fpixels; /* fpixels should be freed in the calling routine */
}
