//font
void SettingDlg::OnFontChange(wxCommandEvent &event)
{
wxString str = m_font_cmb->GetValue();
if (str != "")
{
m_font_file = str + ".ttf";
std::string exePath = wxStandardPaths::Get().GetExecutablePath().ToStdString();
exePath = exePath.substr(0,exePath.find_last_of(std::string()+GETSLASH()));
std::string loc = exePath + GETSLASH() + wxString("Fonts") +
GETSLASH() + str.ToStdString() + ".ttf";
VRenderFrame* vr_frame = (VRenderFrame*)m_frame;
if (vr_frame)
{
vr_frame->GetTextRenderer()->LoadNewFace(loc);
vr_frame->GetTextRenderer()->SetSize(m_text_size);
for (int i=0 ; i<(int)vr_frame->GetViewList()->size() ; i++)
{
VRenderView* vrv = (*vr_frame->GetViewList())[i];
if (vrv)
vrv->RefreshGL();
}
}
}
}
void OIBReader::SetBatch(bool batch)
{
if (batch)
{
//read the directory info
wstring search_path = m_path_name.substr(0,
m_path_name.find_last_of(GETSLASH())) + GETSLASH();
FIND_FILES(search_path,L".oib",m_batch_list,m_cur_batch);
m_batch = true;
}
else
m_batch = false;
}
void DatabaseDlg::SaveDefault()
{
if (!m_dbtree) return;
wxString expath = wxStandardPaths::Get().GetExecutablePath();
expath = expath.BeforeLast(GETSLASH(),NULL);
#ifdef _WIN32
wxString dft = expath + "\\catalog_list.set";
wxString dft2 = wxStandardPaths::Get().GetUserConfigDir() + "\\catalog_list.set";
if (!wxFileExists(dft) && wxFileExists(dft2))
dft = dft2;
#else
wxString dft = expath + "/../Resources/" + "catalog_list.set";
#endif
wxFileOutputStream os(dft);
if (os.IsOk())
{
wxTextOutputStream tout(os);
std::vector<DBCatalog> *cat = m_dbtree->GetCatalogDataIndex();
if (cat && !cat->empty())
{
for (int i = 0; i < cat->size(); i++)
tout << (*cat)[i].path << "\n";
}
}
}
void OIFReader::ReadSequenceOif()
{
for (int i=0; i<(int)m_oif_info.size(); i++)
{
wstring path_name = m_oif_info[i].filename;
m_oif_info[i].subdirname = path_name + L".files" + GETSLASH();
if (path_name == m_path_name)
m_cur_time = i;
m_subdir_name = path_name + L".files" + GETSLASH();
std::vector<std::wstring> list;
FIND_FILES(m_subdir_name,L".tif",list,m_oif_t);
//read file sequence
for(size_t f = 0; f < list.size(); f++)
ReadTifSequence(list.at(f), i);
}
}
void OIFReader::ReadSingleOif()
{
m_subdir_name = m_path_name + L".files" + GETSLASH();
std::vector<std::wstring> list;
int tmp;
FIND_FILES(m_subdir_name,L".tif",list,tmp);
//read file sequence
for(size_t f = 0; f < list.size(); f++)
ReadTifSequence(list.at(f));
}
void OIFReader::SetFile(std::string &file)
{
if (!file.empty())
{
if (!m_path_name.empty())
m_path_name.clear();
m_path_name.assign(file.length(), L' ');
copy(file.begin(), file.end(), m_path_name.begin());
m_data_name = m_path_name.substr(m_path_name.find_last_of(GETSLASH())+1);
}
m_id_string = m_path_name;
}
void LSMReader::Preprocess()
{
FILE* pfile = 0;
if (!WFOPEN(&pfile, m_path_name.c_str(), L"rb"))
return;
m_lsm_info.clear();
m_l4gb = false;
int i, j;
unsigned int ioffset = 0;
fread(&ioffset, sizeof(unsigned int), 1, pfile);
if (ioffset!=0x002A4949)
{
fclose(pfile);
return;
}
int cnt_image = 0;
bool full_image = false;
//first offset
if (fread(&ioffset, sizeof(unsigned int), 1, pfile)<1)
{
fclose(pfile);
return;
}
unsigned int prev_offset = 0;
unsigned int offset_high = 0;
//images
while (fseek(pfile, ioffset, SEEK_SET)==0)
{
unsigned short entry_num;
//entry number
if (fread(&entry_num, sizeof(unsigned short), 1, pfile)<1)
{
fclose(pfile);
return;
}
vector<unsigned int> offsets;
vector<unsigned int> offset_highs;
vector<unsigned int> sizes;
for (i=0; i<entry_num; i++)
{
unsigned short tag;
if (fread(&tag, sizeof(unsigned short), 1, pfile)<1)
{
fclose(pfile);
return;
}
unsigned short type;
if (fread(&type, sizeof(unsigned short), 1, pfile)<1)
{
fclose(pfile);
return;
}
unsigned int length;
if (fread(&length, sizeof(unsigned int), 1, pfile)<1)
{
fclose(pfile);
return;
}
unsigned int value;
if (fread(&value, sizeof(unsigned int), 1, pfile)<1)
{
fclose(pfile);
return;
}
//remember current position
long cur_pos = ftell(pfile);
switch (tag)
{
case 0x00FE://254, new subfile type
if (value==0)
{
full_image = true;
cnt_image++;
}
else
full_image = false;
break;
case 0x0100://256, image width
if (full_image && cnt_image == 1)
m_x_size = value;
break;
case 0x0101://257, image length
if (full_image && cnt_image == 1)
m_y_size = value;
break;
case 0x0102://258, bits per sample
break;
case 0x0103://259, compression
if (full_image && cnt_image == 1)
m_compression = value<<16>>16;
break;
case 0x0106://262, photometric interpretation
break;
case 0x0111://273, strip offsets
if (full_image)
{
if (length==1)
{
offsets.push_back(value);
if (value < prev_offset)
{
m_l4gb = true;
offset_high++;
}
prev_offset = value;
offset_highs.push_back(offset_high);
}
else
{
if (fseek(pfile, value, SEEK_SET)==0)
{
unsigned int vtemp;
for (j=0; j<(int)length; j++)
{
if (fread(&vtemp, sizeof(unsigned int), 1, pfile)==1)
{
offsets.push_back(vtemp);
if (vtemp < prev_offset)
{
m_l4gb = true;
offset_high++;
}
prev_offset = vtemp;
offset_highs.push_back(offset_high);
}
}
}
}
}
break;
case 0x0115://277, samples per pixel
if (full_image && cnt_image == 1)
m_chan_num = value<<16>>16;
break;
case 0x0117://279, strip byte counts
if (full_image)
{
if (length==1)
{
sizes.push_back(value);
}
else
{
if (fseek(pfile, value, SEEK_SET)==0)
{
unsigned int vtemp;
for (j=0; j<(int)length; j++)
{
if (fread(&vtemp, sizeof(unsigned int), 1, pfile)==1)
sizes.push_back(vtemp);
}
}
}
}
break;
case 0x011C://284, planar configuration
break;
case 0x013D://317, predictor
if (full_image && cnt_image == 1)
m_predictor = value<<16>>16;
break;
break;
case 0x0140://320, colormap
break;
case 0x866C://34412, zeiss lsm info
if (type == 1)
{
if (fseek(pfile, value, SEEK_SET)!=0)
{
fclose(pfile);
return;
}
unsigned char* pdata = new unsigned char[length];
if (fread(pdata, sizeof(unsigned char), length, pfile)!=length)
{
fclose(pfile);
return;
}
//read lsm info
ReadLsmInfo(pfile, pdata, length);
//delete
delete []pdata;
}
break;
}
//reset position
if (fseek(pfile, cur_pos, SEEK_SET)!=0)
{
fclose(pfile);
return;
}
}
//build lsm info, which contains all offset values and sizes
if (full_image)
{
int time = (cnt_image-1) / m_slice_num;
if (time+1 > (int)m_lsm_info.size())
{
DatasetInfo dinfo;
for (i=0; i<m_chan_num; i++)
{
ChannelInfo cinfo;
dinfo.push_back(cinfo);
}
m_lsm_info.push_back(dinfo);
}
//int slice = (cnt_image-1) % m_slice_num;
for (i=0; i<m_chan_num; i++)
{
SliceInfo sinfo;
sinfo.offset = offsets[i];
sinfo.offset_high = offset_highs[i];
sinfo.size = sizes[i];
//add slice info to lsm info
m_lsm_info[time][i].push_back(sinfo);
}
}
//next image
if (fread(&ioffset, sizeof(unsigned int), 1, pfile)<1)
{
fclose(pfile);
return;
}
if (!ioffset)
break;
}
fclose(pfile);
m_cur_time = 0;
m_data_name = m_path_name.substr(m_path_name.find_last_of(GETSLASH())+1);
}
void SettingDlg::SaveSettings()
{
wxFileConfig fconfig("FluoRender Settings");
fconfig.Write("ver_major", VERSION_MAJOR_TAG);
fconfig.Write("ver_minor", VERSION_MINOR_TAG);
fconfig.SetPath("/gm calculation");
fconfig.Write("mode", m_gmc_mode);
fconfig.SetPath("/peeling layers");
fconfig.Write("value", m_peeling_layers);
fconfig.SetPath("/micro blend");
fconfig.Write("mode", m_micro_blend);
fconfig.SetPath("/save project");
fconfig.Write("mode", m_prj_save);
fconfig.SetPath("/realtime compress");
fconfig.Write("mode", m_realtime_compress);
fconfig.SetPath("/skip bricks");
fconfig.Write("mode", m_skip_bricks);
fconfig.SetPath("/mouse int");
fconfig.Write("mode", m_mouse_int);
fconfig.SetPath("/dir shadow");
fconfig.Write("mode", m_shadow_dir);
fconfig.Write("x", m_shadow_dir_x);
fconfig.Write("y", m_shadow_dir_y);
fconfig.SetPath("/test mode");
fconfig.Write("speed", m_test_speed);
fconfig.Write("param", m_test_param);
fconfig.Write("wiref", m_test_wiref);
fconfig.SetPath("/wavelength to color");
fconfig.Write("c1", m_wav_color1);
fconfig.Write("c2", m_wav_color2);
fconfig.Write("c3", m_wav_color3);
fconfig.Write("c4", m_wav_color4);
fconfig.SetPath("/time id");
fconfig.Write("value", m_time_id);
fconfig.SetPath("/grad bg");
fconfig.Write("value", m_grad_bg);
fconfig.SetPath("/override vox");
fconfig.Write("value", m_override_vox);
fconfig.SetPath("/soft threshold");
fconfig.Write("value", m_soft_threshold);
fconfig.SetPath("/save cmp");
fconfig.Write("value", VRenderFrame::GetCompression());
fconfig.SetPath("/run script");
fconfig.Write("value", m_run_script);
fconfig.SetPath("/paint history");
fconfig.Write("value", m_paint_hist_depth);
fconfig.SetPath("/text font");
fconfig.Write("file", m_font_file);
fconfig.Write("value", m_text_size);
//memory settings
fconfig.SetPath("/memory settings");
fconfig.Write("mem swap", m_mem_swap);
fconfig.Write("graphics mem", m_graphics_mem);
fconfig.Write("large data size", m_large_data_size);
fconfig.Write("force brick size", m_force_brick_size);
fconfig.Write("up time", m_up_time);
EnableStreaming(m_mem_swap);
//update order
fconfig.SetPath("/update order");
fconfig.Write("value", m_update_order);
//point volume mode
fconfig.SetPath("/point volume mode");
fconfig.Write("value", m_point_volume_mode);
//ruler use transfer function
fconfig.SetPath("/ruler use transf");
fconfig.Write("value", m_ruler_use_transf);
//ruler time dependent
fconfig.SetPath("/ruler time dependent");
fconfig.Write("value", m_ruler_time_dep);
//flags for flipping pvxml
fconfig.SetPath("/pvxml flip");
fconfig.Write("x", m_pvxml_flip_x);
fconfig.Write("y", m_pvxml_flip_y);
//pixel format
fconfig.SetPath("/pixel format");
fconfig.Write("red_bit", m_red_bit);
fconfig.Write("green_bit", m_green_bit);
fconfig.Write("blue_bit", m_blue_bit);
fconfig.Write("alpha_bit", m_alpha_bit);
fconfig.Write("depth_bit", m_depth_bit);
fconfig.Write("samples", m_samples);
//context attrib
fconfig.SetPath("/context attrib");
fconfig.Write("gl_major_ver", m_gl_major_ver);
fconfig.Write("gl_minor_ver", m_gl_minor_ver);
fconfig.Write("gl_profile_mask", m_gl_profile_mask);
//cl device
fconfig.SetPath("/cl device");
fconfig.Write("device_id", m_cl_device_id);
wxString expath = wxStandardPaths::Get().GetExecutablePath();
expath = expath.BeforeLast(GETSLASH(),NULL);
#ifdef _WIN32
wxString dft = expath + "\\" + SETTING_FILE_NAME;
#else
wxString dft = expath + "/../Resources/" + SETTING_FILE_NAME;
#endif
wxFileOutputStream os(dft);
fconfig.Save(os);
}
wxWindow* SettingDlg::CreateProjectPage(wxWindow *parent)
{
//validator: integer
wxIntegerValidator<unsigned int> vald_int;
wxStaticText* st;
wxPanel *page = new wxPanel(parent);
//project save
wxBoxSizer *group1 = new wxStaticBoxSizer(
new wxStaticBox(page, wxID_ANY, "Open/Save"), wxVERTICAL);
m_prj_save_chk = new wxCheckBox(page, ID_PrjSaveChk,
"Save project when capture viewport or export movie.");
m_realtime_cmp_chk = new wxCheckBox(page, ID_RealtimeCmpChk,
"Compress data in graphics memory when loading.");
group1->Add(10, 5);
group1->Add(m_prj_save_chk);
group1->Add(10, 5);
group1->Add(m_realtime_cmp_chk);
group1->Add(10, 5);
//font
wxBoxSizer *group2 = new wxStaticBoxSizer(
new wxStaticBox(page, wxID_ANY, "Render View Font and Size"), wxVERTICAL);
wxBoxSizer *sizer2_1 = new wxBoxSizer(wxHORIZONTAL);
st = new wxStaticText(page, 0, "Font:");
m_font_cmb = new wxComboBox(page, ID_FontCmb, "",
wxDefaultPosition, wxSize(150, -1), 0, NULL, wxCB_READONLY);
//populate fonts
std::string exePath = wxStandardPaths::Get().GetExecutablePath().ToStdString();
exePath = exePath.substr(0,exePath.find_last_of(std::string()+GETSLASH()));
wxString loc = wxString(exePath) + GETSLASH() + wxString("Fonts") +
GETSLASH() + wxString("*.ttf");
wxLogNull logNo;
wxString file = wxFindFirstFile(loc);
while (!file.empty())
{
file = file.AfterLast(GETSLASH());
file = file.BeforeLast('.');
m_font_cmb->Append(file);
file = wxFindNextFile();
}
sizer2_1->Add(st);
sizer2_1->Add(20, 10);
sizer2_1->Add(m_font_cmb);
sizer2_1->Add(20, 10);
st = new wxStaticText(page, 0, "Size:");
m_font_size_cmb = new wxComboBox(page, ID_FontSizeCmb, "",
wxDefaultPosition, wxSize(50, -1), 0, NULL, wxCB_READONLY);
for (int font_size=10; font_size<31; font_size+=2)
m_font_size_cmb->Append(wxString::Format("%d", font_size));
sizer2_1->Add(st);
sizer2_1->Add(20, 10);
sizer2_1->Add(m_font_size_cmb);
group2->Add(10, 5);
group2->Add(sizer2_1, 0, wxEXPAND);
group2->Add(10, 5);
st = new wxStaticText(page, 0,
"Put TrueType font files into the \"Fonts\" folder.\n"\
"Restart FluoRender to load new font files.");
group2->Add(st);
group2->Add(10, 5);
//script
wxBoxSizer *group3 = new wxStaticBoxSizer(
new wxStaticBox(page, wxID_ANY, "4D Script"), wxVERTICAL);
m_run_script_chk = new wxCheckBox(page, ID_RunScriptChk,
"Enable execution of a script on 4D data during playback.");
st = new wxStaticText(page, 0,
"Compose and save the text file \"script_4d.txt\" in the same folder as the\n"\
"4D data. See details in the user manual for the syntax of the script.");
group3->Add(10, 5);
group3->Add(m_run_script_chk);
group3->Add(10, 5);
group3->Add(st);
group3->Add(10, 5);
//paint history depth
wxBoxSizer *group4 = new wxStaticBoxSizer(
new wxStaticBox(page, wxID_ANY, "Paint History"), wxVERTICAL);
wxBoxSizer *sizer4_1 = new wxBoxSizer(wxHORIZONTAL);
m_paint_hist_depth_sldr = new wxSlider(page, ID_PaintHistDepthSldr, 0, 0, 10,
wxDefaultPosition, wxDefaultSize, wxSL_HORIZONTAL);
m_paint_hist_depth_text = new wxTextCtrl(page, ID_PaintHistDepthText, "0",
wxDefaultPosition, wxSize(40, 20), 0, vald_int);
st = new wxStaticText(page, 0,
"The number of undo steps for paint brush selection.\n" \
"Set the value to 0 to disable history.\n" \
"A value greater than 0 slows down speed and increases memory usage.");
sizer4_1->Add(m_paint_hist_depth_sldr, 1, wxEXPAND);
sizer4_1->Add(m_paint_hist_depth_text, 0, wxALIGN_CENTER);
group4->Add(10, 5);
group4->Add(sizer4_1, 0, wxEXPAND);
group4->Add(10, 5);
group4->Add(st);
group4->Add(10, 5);
wxBoxSizer *sizerV = new wxBoxSizer(wxVERTICAL);
sizerV->Add(10, 10);
sizerV->Add(group1, 0, wxEXPAND);
sizerV->Add(10, 10);
sizerV->Add(group2, 0, wxEXPAND);
sizerV->Add(10, 10);
sizerV->Add(group3, 0, wxEXPAND);
sizerV->Add(10, 10);
sizerV->Add(group4, 0, wxEXPAND);
page->SetSizer(sizerV);
return page;
}
//load default
void BrushToolDlg::LoadDefault()
{
wxString expath = wxStandardPaths::Get().GetExecutablePath();
expath = expath.BeforeLast(GETSLASH(),NULL);
#ifdef _WIN32
wxString dft = expath + "\\default_brush_settings.dft";
#else
wxString dft = expath + "/../Resources/default_brush_settings.dft";
#endif
wxFileInputStream is(dft);
if (!is.IsOk())
return;
wxFileConfig fconfig(is);
wxString str;
double val;
int ival;
bool bval;
//brush properties
fconfig.Read("brush_ini_thresh", &m_dft_ini_thresh);
fconfig.Read("brush_gm_falloff", &m_dft_gm_falloff);
fconfig.Read("brush_scl_falloff", &m_dft_scl_falloff);
if (fconfig.Read("brush_scl_translate", &m_dft_scl_translate))
{
str = wxString::Format("%.1f", m_dft_scl_translate*m_max_value);
m_brush_scl_translate_sldr->SetRange(0, int(m_max_value*10.0));
m_brush_scl_translate_text->SetValue(str);
}
//auto thresh
if (fconfig.Read("auto_thresh", &bval))
m_estimate_thresh_chk->SetValue(bval);
//edge detect
if (fconfig.Read("edge_detect", &bval))
m_edge_detect_chk->SetValue(bval);
//hidden removal
if (fconfig.Read("hidden_removal", &bval))
m_hidden_removal_chk->SetValue(bval);
//select group
if (fconfig.Read("select_group", &bval))
m_select_group_chk->SetValue(bval);
//2d influence
if (fconfig.Read("brush_2dinfl", &val))
{
str = wxString::Format("%.2f", val);
m_brush_2dinfl_text->SetValue(str);
}
//size 1
if (fconfig.Read("brush_size1", &val) && val>0.0)
{
str = wxString::Format("%d", (int)val);
m_brush_size1_text->SetValue(str);
}
//size 2 link
if (fconfig.Read("use_brush_size2", &bval))
{
m_brush_size2_chk->SetValue(bval);
if (bval)
{
m_brush_size2_sldr->Enable();
m_brush_size2_text->Enable();
}
else
{
m_brush_size2_sldr->Disable();
m_brush_size2_text->Disable();
}
}
//size 2
if (fconfig.Read("brush_size2", &val) && val>0.0)
{
str = wxString::Format("%d", (int)val);
m_brush_size2_text->SetValue(str);
}
//iterations
if (fconfig.Read("brush_iters", &ival))
{
switch (ival)
{
case 1:
m_brush_iterw_rb->SetValue(true);
m_brush_iters_rb->SetValue(false);
m_brush_iterss_rb->SetValue(false);
break;
case 2:
m_brush_iterw_rb->SetValue(false);
m_brush_iters_rb->SetValue(true);
m_brush_iterss_rb->SetValue(false);
break;
case 3:
m_brush_iterw_rb->SetValue(false);
m_brush_iters_rb->SetValue(false);
m_brush_iterss_rb->SetValue(true);
break;
}
}
//component analyzer
//selected only
if (fconfig.Read("ca_select_only", &bval))
m_ca_select_only_chk->SetValue(bval);
//min voxel
if (fconfig.Read("ca_min", &ival))
{
m_dft_ca_min = ival;
str = wxString::Format("%d", ival);
m_ca_min_text->SetValue(str);
}
//max voxel
if (fconfig.Read("ca_max", &ival))
{
m_dft_ca_max = ival;
str = wxString::Format("%d", ival);
m_ca_max_text->SetValue(str);
}
//ignore max
if (fconfig.Read("ca_ignore_max", &bval))
{
m_ca_ignore_max_chk->SetValue(bval);
if (bval)
m_ca_max_text->Disable();
else
m_ca_max_text->Enable();
}
//thresh
if (fconfig.Read("ca_thresh", &m_dft_ca_thresh))
{
str = wxString::Format("%.1f", m_dft_ca_thresh*m_max_value);
m_ca_thresh_sldr->SetRange(0, int(m_max_value*10.0));
m_ca_thresh_text->SetValue(str);
}
//falloff
fconfig.Read("ca_falloff", &m_dft_ca_falloff);
//size map
if (fconfig.Read("ca_size_map", &bval))
m_ca_size_map_chk->SetValue(bval);
//nr thresh
fconfig.Read("nr_thresh", &m_dft_nr_thresh);
//nr size
if (fconfig.Read("nr_size", &m_dft_nr_size))
{
str = wxString::Format("%d", (int)val);
m_nr_size_text->SetValue(str);
}
}
void NRRDReader::Preprocess()
{
m_4d_seq.clear();
//separate path and name
int64_t pos = m_path_name.find_last_of(GETSLASH());
if (pos == -1)
return;
wstring path = m_path_name.substr(0, pos+1);
wstring name = m_path_name.substr(pos+1);
//generate search name for time sequence
int64_t begin = name.find(m_time_id);
size_t end = -1;
size_t id_len = m_time_id.size();
wstring t_num;
if (begin != -1)
{
size_t j;
for (j=begin+id_len; j<name.size(); j++)
{
wchar_t c = name[j];
if (iswdigit(c))
t_num.push_back(c);
else
break;
}
if (t_num.size() > 0)
end = j;
else
begin = -1;
}
//build 4d sequence
if (begin == -1)
{
TimeDataInfo info;
info.filenumber = 0;
info.filename = m_path_name;
m_4d_seq.push_back(info);
m_cur_time = 0;
}
else
{
//search time sequence files
std::vector<std::wstring> list;
int tmp = 0;
FIND_FILES(path,L".nrrd",list,tmp,name.substr(0,begin+id_len+1));
for(size_t i = 0; i < list.size(); i++) {
size_t start_idx = list.at(i).find(m_time_id) + id_len;
size_t end_idx = list.at(i).find(L".nrrd");
size_t size = end_idx - start_idx;
std::wstring fileno = list.at(i).substr(start_idx, size);
TimeDataInfo info;
info.filenumber = WSTOI(fileno);
info.filename = list.at(i);
m_4d_seq.push_back(info);
}
}
if (m_4d_seq.size() > 0)
{
std::sort(m_4d_seq.begin(), m_4d_seq.end(), NRRDReader::nrrd_sort);
for (int t=0; t<(int)m_4d_seq.size(); t++)
{
if (m_4d_seq[t].filename == m_path_name)
{
m_cur_time = t;
break;
}
}
}
else
m_cur_time = 0;
//3D nrrd file
m_chan_num = 1;
//get time number
m_time_num = (int)m_4d_seq.size();
}
Nrrd* NRRDReader::Convert(int t, int c, bool get_max)
{
if (t<0 || t>=m_time_num)
return 0;
int i;
m_data_name = m_4d_seq[t].filename.substr(m_4d_seq[t].filename.find_last_of(GETSLASH())+1);
Nrrd *output = nrrdNew();
NrrdIoState *nio = nrrdIoStateNew();
nrrdIoStateSet(nio, nrrdIoStateSkipData, AIR_TRUE);
string str;
str.assign(m_4d_seq[t].filename.length(), 0);
for (i=0; i<(int)m_4d_seq[t].filename.length(); i++)
str[i] = (char)m_4d_seq[t].filename[i];
if (nrrdLoad(output, str.c_str(), nio))
return 0;
nio = nrrdIoStateNix(nio);
if (output->dim != 3)
{
delete []output->data;
nrrdNix(output);
return 0;
}
m_slice_num = int(output->axis[2].size);
m_x_size = int(output->axis[0].size);
m_y_size = int(output->axis[1].size);
m_xspc = output->axis[0].spacing;
m_yspc = output->axis[1].spacing;
m_zspc = output->axis[2].spacing;
if (m_xspc>0.0 && m_xspc<100.0 &&
m_yspc>0.0 && m_yspc<100.0 &&
m_zspc>0.0 && m_zspc<100.0)
m_valid_spc = true;
else
{
m_valid_spc = false;
m_xspc = 1.0;
m_yspc = 1.0;
m_zspc = 1.0;
}
int data_size = m_slice_num * m_x_size * m_y_size;
if (output->type == nrrdTypeUShort || output->type == nrrdTypeShort)
data_size *= 2;
output->data = new unsigned char[data_size];
if (nrrdLoad(output, str.c_str(), NULL))
{
delete []output->data;
nrrdNix(output);
return 0;
}
// turn signed into unsigned
if (output->type == nrrdTypeChar) {
for (i=0; i<m_slice_num*m_x_size*m_y_size; i++) {
char val = ((char*)output->data)[i];
unsigned char n = val + 128;
((unsigned char*)output->data)[i] = n;
}
output->type = nrrdTypeUChar;
}
m_max_value = 0.0;
// turn signed into unsigned
unsigned short min_value = 32768, n;
if (output->type == nrrdTypeShort || output->type == nrrdTypeUShort) {
for (i=0; i<m_slice_num*m_x_size*m_y_size; i++) {
if (output->type == nrrdTypeShort) {
short val = ((short*)output->data)[i];
n = val + 32768;
((unsigned short*)output->data)[i] = n;
min_value = (n < min_value)?n:min_value;
} else {
n = ((unsigned short*)output->data)[i];
}
if (get_max)
m_max_value = (n > m_max_value)?n:m_max_value;
}
output->type = nrrdTypeUShort;
}
//find max value
if (output->type == nrrdTypeUChar)
{
//8 bit
m_max_value = 255.0;
m_scalar_scale = 1.0;
}
else if (output->type == nrrdTypeUShort)
{
m_max_value -= min_value;
//16 bit
for (i=0; i<m_slice_num*m_x_size*m_y_size; i++) {
((unsigned short*)output->data)[i] =
((unsigned short*)output->data)[i] - min_value;
}
if (m_max_value > 0.0)
m_scalar_scale = 65535.0 / m_max_value;
else
m_scalar_scale = 1.0;
}
else
{
delete []output->data;
nrrdNix(output);
return 0;
}
m_cur_time = t;
return output;
}
DatabaseDlg::DatabaseDlg(wxWindow* frame, wxWindow* parent)
: wxPanel(parent, wxID_ANY,
wxPoint(500, 150), wxSize(440, 700),
0, "DatabaseDlg"),
m_frame(parent),
m_view(0)
{
SetEvtHandlerEnabled(false);
Freeze();
wxBoxSizer *group1 = new wxBoxSizer(wxHORIZONTAL);
m_url_text = new DBSearcher(parent, this, ID_SearchTextCtrl, wxT("Search"),
wxDefaultPosition, wxSize(300, 23), wxTE_PROCESS_ENTER);
m_download_btn = new wxButton(this, ID_DownloadBtn, wxT("Search"),
wxDefaultPosition, wxSize(70, 23));
group1->Add(5, 5);
group1->Add(m_url_text, 1, wxEXPAND);
group1->Add(5, 5);
group1->Add(m_download_btn, 0, wxALIGN_CENTER);
wxBoxSizer *group_g = new wxBoxSizer(wxHORIZONTAL);
m_sch_gauge = new wxGauge(this, wxID_ANY, 100, wxDefaultPosition, wxSize(300, 10));
group_g->Add(5, 10);
group_g->Add(m_sch_gauge, 1, wxEXPAND);
group_g->Add(5, 10);
//list
m_dbtree = new DBTreeCtrl(frame, this, wxID_ANY);
m_searchResult = new DBTreeCtrl(frame, this, wxID_ANY);
wxString expath = wxStandardPaths::Get().GetExecutablePath();
expath = expath.BeforeLast(GETSLASH(),NULL);
#ifdef _WIN32
wxString dft = expath + "\\catalog_list.set";
if (!wxFileExists(dft))
dft = wxStandardPaths::Get().GetUserConfigDir() + "\\catalog_list.set";
#else
wxString dft = expath + "/../Resources/" + "catalog_list.set";
#endif
wxFileInputStream is(dft);
if (is.IsOk())
{
wxTextInputStream tis(is);
wxString str;
while (!is.Eof())
{
wxString sline = tis.ReadLine();
m_dbtree->LoadDatabase(sline);
}
}
wxBoxSizer *group2 = new wxBoxSizer(wxHORIZONTAL);
m_db_text = new DBSearcher(parent, this, ID_DBTextCtrl, wxT("URL or Path"),
wxDefaultPosition, wxSize(330, 23), wxTE_PROCESS_ENTER);
m_browse_btn = new wxButton(this, ID_BrowseBtn, wxT("Browse..."),
wxDefaultPosition, wxSize(90, 23));
group2->Add(5, 5);
group2->Add(m_db_text, 1, wxEXPAND);
group2->Add(5, 5);
group2->Add(m_browse_btn, 0, wxALIGN_CENTER);
group2->Add(5, 5);
wxBoxSizer *group3 = new wxBoxSizer(wxHORIZONTAL);
m_add_btn = new wxButton(this, ID_AddDBBtn, wxT("Add"),
wxDefaultPosition, wxSize(90, 28));
group3->AddStretchSpacer(1);
group3->Add(5, 5);
group3->Add(m_add_btn, 0, wxALIGN_CENTER);
group3->Add(5, 5);
//all controls
wxBoxSizer *sizerV = new wxBoxSizer(wxVERTICAL);
sizerV->Add(10, 10);
sizerV->Add(group1, 0, wxEXPAND);
sizerV->Add(10, 5);
sizerV->Add(group_g, 0, wxEXPAND);
sizerV->Add(10, 10);
sizerV->Add(m_dbtree, 1, wxEXPAND);
sizerV->Add(m_searchResult, 1, wxEXPAND);
sizerV->Add(10, 20);
sizerV->Add(group2, 0, wxEXPAND);
sizerV->Add(10, 5);
sizerV->Add(group3, 0, wxEXPAND);
m_searchResult->Hide();
m_sch_gauge->Hide();
SetSizer(sizerV);
Layout();
m_thread = NULL;
m_th_del = NULL;
Thaw();
SetEvtHandlerEnabled(true);
}
void OIFReader::SetFile(wstring &file)
{
m_path_name = file;
m_data_name = m_path_name.substr(m_path_name.find_last_of(GETSLASH())+1);
m_id_string = m_path_name;
}
void SettingDlg::GetSettings()
{
m_gmc_mode = 2;
m_prj_save = false;
m_realtime_compress = false;
m_skip_bricks = false;
m_test_speed = false;
m_test_param = false;
m_test_wiref = false;
m_peeling_layers = 1;
m_micro_blend = false;
m_shadow_dir = false;
m_shadow_dir_x = 0.0;
m_shadow_dir_y = 0.0;
m_mouse_int = true;
m_wav_color1 = 5;
m_wav_color2 = 5;
m_wav_color3 = 5;
m_wav_color4 = 5;
m_time_id = "_T";
m_grad_bg = false;
m_override_vox = true;
m_soft_threshold = 0.0;
m_run_script = false;
m_text_size = 12;
m_font_file = "";
m_mem_swap = false;
m_graphics_mem = 1000.0;
m_large_data_size = 1000.0;
m_force_brick_size = 128;
m_up_time = 100;
m_update_order = 0;
m_point_volume_mode = 0;
m_ruler_use_transf = false;
m_ruler_time_dep = true;
m_pvxml_flip_x = false;
m_pvxml_flip_y = false;
m_red_bit = 8;
m_green_bit = 8;
m_blue_bit = 8;
m_alpha_bit = 8;
m_depth_bit = 24;
m_samples = 0;
m_gl_major_ver = 4;
m_gl_minor_ver = 4;
m_gl_profile_mask = 2;
m_cl_device_id = 0;
m_paint_hist_depth = 0;
wxString expath = wxStandardPaths::Get().GetExecutablePath();
expath = expath.BeforeLast(GETSLASH(),NULL);
#ifdef _WIN32
wxString dft = expath + "\\" + SETTING_FILE_NAME;
#else
wxString dft = expath + "/../Resources/" + SETTING_FILE_NAME;
#endif
wxFileInputStream is(dft);
if (!is.IsOk())
return;
wxFileConfig fconfig(is);
//gradient magnitude
if (fconfig.Exists("/gm calculation"))
{
fconfig.SetPath("/gm calculation");
m_gmc_mode = fconfig.Read("mode", 2l);
}
//depth peeling
if (fconfig.Exists("/peeling layers"))
{
fconfig.SetPath("/peeling layers");
m_peeling_layers = fconfig.Read("value", 1l);
}
//micro blending
if (fconfig.Exists("/micro blend"))
{
fconfig.SetPath("/micro blend");
fconfig.Read("mode", &m_micro_blend, false);
}
//save project
if (fconfig.Exists("/save project"))
{
fconfig.SetPath("/save project");
fconfig.Read("mode", &m_prj_save, false);
}
//realtime compression
if (fconfig.Exists("/realtime compress"))
{
fconfig.SetPath("/realtime compress");
fconfig.Read("mode", &m_realtime_compress, false);
}
//skip empty bricks
if (fconfig.Exists("/skip bricks"))
{
fconfig.SetPath("/skip bricks");
fconfig.Read("mode", &m_skip_bricks, false);
}
//mouse interactions
if (fconfig.Exists("/mouse int"))
{
fconfig.SetPath("/mouse int");
fconfig.Read("mode", &m_mouse_int, true);
}
//shadow
if (fconfig.Exists("/dir shadow"))
{
fconfig.SetPath("/dir shadow");
fconfig.Read("mode", &m_shadow_dir, false);
fconfig.Read("x", &m_shadow_dir_x, 0.0);
fconfig.Read("y", &m_shadow_dir_y, 0.0);
}
//test mode
if (fconfig.Exists("/test mode"))
{
fconfig.SetPath("/test mode");
fconfig.Read("speed", &m_test_speed, false);
fconfig.Read("param", &m_test_param, false);
fconfig.Read("wiref", &m_test_wiref, false);
}
//wavelength to color
if (fconfig.Exists("/wavelength to color"))
{
fconfig.SetPath("/wavelength to color");
fconfig.Read("c1", &m_wav_color1, 5);
fconfig.Read("c2", &m_wav_color2, 5);
fconfig.Read("c3", &m_wav_color3, 5);
fconfig.Read("c4", &m_wav_color4, 5);
}
//time sequence identifier
if (fconfig.Exists("/time id"))
{
fconfig.SetPath("/time id");
fconfig.Read("value", &m_time_id);
}
//gradient background
if (fconfig.Exists("/grad bg"))
{
fconfig.SetPath("/grad bg");
fconfig.Read("value", &m_grad_bg);
}
//save compressed
if (fconfig.Exists("/save cmp"))
{
bool save_cmp;
fconfig.SetPath("/save cmp");
fconfig.Read("value", &save_cmp);
VRenderFrame::SetCompression(save_cmp);
}
//override vox
if (fconfig.Exists("/override vox"))
{
fconfig.SetPath("/override vox");
fconfig.Read("value", &m_override_vox);
}
//soft threshold
if (fconfig.Exists("/soft threshold"))
{
fconfig.SetPath("/soft threshold");
fconfig.Read("value", &m_soft_threshold);
}
//run script
if (fconfig.Exists("/run script"))
{
fconfig.SetPath("/run script");
fconfig.Read("value", &m_run_script);
}
//paint history depth
if (fconfig.Exists("/paint history"))
{
fconfig.SetPath("/paint history");
fconfig.Read("value", &m_paint_hist_depth);
}
//text font
if (fconfig.Exists("/text font"))
{
fconfig.SetPath("/text font");
fconfig.Read("file", &m_font_file);
fconfig.Read("value", &m_text_size);
}
//memory settings
if (fconfig.Exists("/memory settings"))
{
fconfig.SetPath("/memory settings");
//enable mem swap
fconfig.Read("mem swap", &m_mem_swap);
//graphics memory limit
fconfig.Read("graphics mem", &m_graphics_mem);
//large data size
fconfig.Read("large data size", &m_large_data_size);
//force brick size
fconfig.Read("force brick size", &m_force_brick_size);
//response time
fconfig.Read("up time", &m_up_time);
}
EnableStreaming(m_mem_swap);
//update order
if (fconfig.Exists("/update order"))
{
fconfig.SetPath("/update order");
fconfig.Read("value", &m_update_order);
}
//point volume mode
if (fconfig.Exists("/point volume mode"))
{
fconfig.SetPath("/point volume mode");
fconfig.Read("value", &m_point_volume_mode);
}
//ruler use transfer function
if (fconfig.Exists("/ruler use transf"))
{
fconfig.SetPath("/ruler use transf");
fconfig.Read("value", &m_ruler_use_transf);
}
//ruler time dependent
if (fconfig.Exists("/ruler time dep"))
{
fconfig.SetPath("/ruler time dep");
fconfig.Read("value", &m_ruler_time_dep);
}
//flags for pvxml flipping
if (fconfig.Exists("/pvxml flip"))
{
fconfig.SetPath("/pvxml flip");
fconfig.Read("x", &m_pvxml_flip_x);
fconfig.Read("y", &m_pvxml_flip_y);
}
//pixel format
if (fconfig.Exists("/pixel format"))
{
fconfig.SetPath("/pixel format");
fconfig.Read("red_bit", &m_red_bit);
fconfig.Read("green_bit", &m_green_bit);
fconfig.Read("blue_bit", &m_blue_bit);
fconfig.Read("alpha_bit", &m_alpha_bit);
fconfig.Read("depth_bit", &m_depth_bit);
fconfig.Read("samples", &m_samples);
}
//context attrib
if (fconfig.Exists("/context attrib"))
{
fconfig.SetPath("/context attrib");
fconfig.Read("gl_major_ver", &m_gl_major_ver);
fconfig.Read("gl_minor_ver", &m_gl_minor_ver);
fconfig.Read("gl_profile_mask", &m_gl_profile_mask);
}
//cl device
if (fconfig.Exists("/cl device"))
{
fconfig.SetPath("/cl device");
fconfig.Read("device_id", &m_cl_device_id);
}
UpdateUI();
}
void OIFReader::Preprocess()
{
m_type = 0;
m_oif_info.clear();
//separate path and name
int64_t pos = m_path_name.find_last_of(GETSLASH());
if (pos == -1)
return;
wstring path = m_path_name.substr(0, pos+1);
wstring name = m_path_name.substr(pos+1);
//extract time sequence string
int64_t begin = name.find(m_time_id);
size_t end = -1;
size_t id_len = m_time_id.size();
if (begin != -1)
{
wstring t_num;
size_t j;
for (j=begin+id_len; j<name.size(); j++)
{
wchar_t c = name[j];
if (iswdigit(c))
t_num.push_back(c);
else break;
}
if (t_num.size() > 0)
end = j;
else
begin = -1;
}
if (begin == -1)
{
ReadSingleOif();
}
else
{
//search time sequence files
std::vector<std::wstring> list;
int tmp = 0;
FIND_FILES(path,L".oif",list,tmp,name.substr(0,begin+id_len+1));
for(size_t i = 0; i < list.size(); i++) {
size_t start_idx = list.at(i).find(m_time_id) + id_len;
size_t end_idx = list.at(i).find(L".oif");
size_t size = end_idx - start_idx;
std::wstring fileno = list.at(i).substr(start_idx, size);
TimeDataInfo info;
info.filenumber = WSTOI(fileno);
info.filename = list.at(i);
m_oif_info.push_back(info);
}
if (m_oif_info.size() > 0)
{
m_type = 1;
std::sort(m_oif_info.begin(), m_oif_info.end(), OIFReader::oif_sort);
ReadSequenceOif();
}
else
{
m_oif_info.clear();
ReadSingleOif();
}
}
ReadOif();
m_time_num = int(m_oif_info.size());
if (m_type == 0)
m_cur_time = 0;
m_chan_num = m_time_num>0?int(m_oif_info[0].dataset.size()):0;
m_slice_num = m_chan_num>0?int(m_oif_info[0].dataset[0].size()):0;
}
//save default
void BrushToolDlg::SaveDefault()
{
wxFileConfig fconfig("FluoRender default brush settings");
double val;
wxString str;
//brush properties
fconfig.Write("brush_ini_thresh", m_dft_ini_thresh);
fconfig.Write("brush_gm_falloff", m_dft_gm_falloff);
fconfig.Write("brush_scl_falloff", m_dft_scl_falloff);
fconfig.Write("brush_scl_translate", m_dft_scl_translate);
//auto thresh
fconfig.Write("auto_thresh", m_estimate_thresh_chk->GetValue());
//edge detect
fconfig.Write("edge_detect", m_edge_detect_chk->GetValue());
//hidden removal
fconfig.Write("hidden_removal", m_hidden_removal_chk->GetValue());
//select group
fconfig.Write("select_group", m_select_group_chk->GetValue());
//2d influence
str = m_brush_2dinfl_text->GetValue();
str.ToDouble(&val);
fconfig.Write("brush_2dinfl", val);
//size 1
str = m_brush_size1_text->GetValue();
str.ToDouble(&val);
fconfig.Write("brush_size1", val);
//size2 link
fconfig.Write("use_brush_size2", m_brush_size2_chk->GetValue());
//size 2
str = m_brush_size2_text->GetValue();
str.ToDouble(&val);
fconfig.Write("brush_size2", val);
//iterations
int ival = m_brush_iterw_rb->GetValue()?1:
m_brush_iters_rb->GetValue()?2:
m_brush_iterss_rb->GetValue()?3:0;
fconfig.Write("brush_iters", ival);
//component analyzer
//selected only
fconfig.Write("ca_select_only", m_ca_select_only_chk->GetValue());
//min voxel
str = m_ca_min_text->GetValue();
str.ToDouble(&val);
fconfig.Write("ca_min", val);
//max voxel
str = m_ca_max_text->GetValue();
str.ToDouble(&val);
fconfig.Write("ca_max", val);
//ignore max
fconfig.Write("ca_ignore_max", m_ca_ignore_max_chk->GetValue());
//thresh
fconfig.Write("ca_thresh", m_dft_ca_thresh);
//falloff
fconfig.Write("ca_falloff", m_dft_ca_falloff);
//size map
fconfig.Write("ca_size_map", m_ca_size_map_chk->GetValue());
//noise removal
//nr thresh
fconfig.Write("nr_thresh", m_dft_nr_thresh);
//nr_size
wxString expath = wxStandardPaths::Get().GetExecutablePath();
expath = expath.BeforeLast(GETSLASH(),NULL);
#ifdef _WIN32
wxString dft = expath + "\\default_brush_settings.dft";
#else
wxString dft = expath + "/../Resources/default_brush_settings.dft";
#endif
wxFileOutputStream os(dft);
fconfig.Save(os);
}