コード例 #1
0
ファイル: crosscorr.c プロジェクト: rashadkm/grass_cmake
/*-------------------------------------------------------------------------------------------*/
int cross_correlation(struct Map_info *Map, double passWE, double passNS)
    /*
       Map: Vector map from which cross-crorrelation will take values
       passWE: spline step in West-East direction
       passNS: spline step in North-South direction

       RETURN:
       TRUE on success
       FALSE on failure
     */
{
    int bilin = TRUE;		/*booleans */
    int nsplx, nsply, nparam_spl, ndata;
    double *mean, *rms, *stdev;

    /* double lambda[PARAM_LAMBDA] = { 0.0001, 0.001, 0.01, 0.1, 1.0, 10.0 }; */	/* Fixed values (by the moment) */
    double lambda[PARAM_LAMBDA] = { 0.0001, 0.001, 0.005, 0.01, 0.02, 0.05 };	/* Fixed values (by the moment) */
    /* a more exhaustive search:
    #define PARAM_LAMBDA 11
    double lambda[PARAM_LAMBDA] = { 0.0001, 0.0005, 0.001, 0.005, 0.01, 0.05, 0.1, 0.5, 1.0, 5.0, 10.0 }; */

    double *TN, *Q, *parVect;	/* Interpolation and least-square vectors */
    double **N, **obsVect;	/* Interpolation and least-square matrix */

    struct Point *observ;
    struct Stats stat_vect;

    /*struct line_pnts *points; */
    /*struct line_cats *Cats; */
    struct Cell_head region;

    G_get_window(&region);

    extern int bspline_field;
    extern char *bspline_column;
    dbCatValArray cvarr;

    G_debug(5,
	    "CrossCorrelation: Some tests using different lambda_i values will be done");

    ndata = Vect_get_num_lines(Map);

    if (ndata > NDATA_MAX)
	G_warning(_("%d are too many points. "
		    "The cross validation would take too much time."), ndata);

    /*points = Vect_new_line_struct (); */
    /*Cats = Vect_new_cats_struct (); */

    /* Current region is read and points recorded into observ */
    observ = P_Read_Vector_Region_Map(Map, &region, &ndata, 1024, 1);
    G_debug(5, "CrossCorrelation: %d points read in region. ", ndata);
    G_verbose_message(_("%d points read in region"),
		      ndata);

    if (ndata > 50)
	G_warning(_("Maybe it takes too long. "
		    "It will depend on how many points you are considering."));
    else
	G_debug(5, "CrossCorrelation: It shouldn't take too long.");

    if (ndata > 0) {		/* If at least one point is in the region */
	int i, j, lbd;		/* lbd: lambda index */
	int BW;	
	double mean_reg, *obs_mean;

	int nrec, ctype = 0, verbosity;
	struct field_info *Fi;
	dbDriver *driver_cats;

	mean = G_alloc_vector(PARAM_LAMBDA);	/* Alloc as much mean, rms and stdev values as the total */
	rms = G_alloc_vector(PARAM_LAMBDA);	/* number of parameter used used for cross validation */
	stdev = G_alloc_vector(PARAM_LAMBDA);

	verbosity = G_verbose(); /* store for later reset */

	/* Working with attributes */
	if (bspline_field > 0) {
	    db_CatValArray_init(&cvarr);

	    Fi = Vect_get_field(Map, bspline_field);
	    if (Fi == NULL)
	      G_fatal_error(_("Database connection not defined for layer %d"),
			    bspline_field);

	    driver_cats =
		db_start_driver_open_database(Fi->driver, Fi->database);
	    G_debug(1, _("CrossCorrelation: driver=%s db=%s"), Fi->driver,
		    Fi->database);

	    if (driver_cats == NULL)
		G_fatal_error(_("Unable to open database <%s> by driver <%s>"),
			      Fi->database, Fi->driver);

	    nrec =
		db_select_CatValArray(driver_cats, Fi->table, Fi->key,
				      bspline_column, NULL, &cvarr);
	    G_debug(3, "nrec = %d", nrec);

	    ctype = cvarr.ctype;
	    if (ctype != DB_C_TYPE_INT && ctype != DB_C_TYPE_DOUBLE)
		G_fatal_error(_("Column type not supported"));

	    if (nrec < 0)
		G_fatal_error(_("No records selected from table <%s> "),
			      Fi->table);

	    G_debug(1, "%d records selected from table",
		    nrec);

	    db_close_database_shutdown_driver(driver_cats);
	}

	/* Setting number of splines as a function of WE and SN spline steps */
	nsplx = ceil((region.east - region.west) / passWE);
	nsply = ceil((region.north - region.south) / passNS);
	nparam_spl = nsplx * nsply;	/* Total number of splines */

	if (nparam_spl > 22900)
	    G_fatal_error(_("Too many splines (%d x %d). "
			    "Consider changing spline steps \"ew_step=\" \"ns_step=\"."),
			  nsplx, nsply);

	BW = P_get_BandWidth(bilin, nsply);
	/**/
	/*Least Squares system */
	N = G_alloc_matrix(nparam_spl, BW);	/* Normal matrix */
	TN = G_alloc_vector(nparam_spl);	/* vector */
	parVect = G_alloc_vector(nparam_spl);	/* Parameters vector */
	obsVect = G_alloc_matrix(ndata, 3);	/* Observation vector */
	Q = G_alloc_vector(ndata);		/* "a priori" var-cov matrix */

	obs_mean = G_alloc_vector(ndata);
	stat_vect = alloc_Stats(ndata);

	for (lbd = 0; lbd < PARAM_LAMBDA; lbd++) {	/* For each lambda value */

	    G_message(_("Beginning cross validation with "
		        "lambda_i=%.4f ... (%d of %d)"), lambda[lbd],
		      lbd+1, PARAM_LAMBDA);

	    /*
	       How the cross correlation algorithm is done:
	       For each cycle, only the first ndata-1 "observ" elements are considered for the 
	       interpolation. Within every interpolation mean is calculated to lowering edge 
	       errors. The point left out will be used for an estimation. The error between the 
	       estimation and the observation is recorded for further statistics.
	       At the end of the cycle, the last point, that is, the ndata-1 index, and the point 
	       with j index are swapped.
	     */
	    for (j = 0; j < ndata; j++) {	/* Cross Correlation will use all ndata points */
		double out_x, out_y, out_z;	/* This point is left out */

		for (i = 0; i < ndata; i++) {	/* Each time, only the first ndata-1 points */
		    double dval;		/* are considered in the interpolation */

		    /* Setting obsVect vector & Q matrix */
		    Q[i] = 1;	/* Q=I */
		    obsVect[i][0] = observ[i].coordX;
		    obsVect[i][1] = observ[i].coordY;

		    if (bspline_field > 0) {
			int cat, ival, ret;

			/*type = Vect_read_line (Map, points, Cats, observ[i].lineID); */
			/*if ( !(type & GV_POINTS ) ) continue; */

			/*Vect_cat_get ( Cats, bspline_field, &cat ); */
			cat = observ[i].cat;

			if (cat < 0)
			    continue;

			if (ctype == DB_C_TYPE_INT) {
			    ret =
				db_CatValArray_get_value_int(&cvarr, cat,
							     &ival);
			    obsVect[i][2] = ival;
			    obs_mean[i] = ival;
			}
			else {	/* DB_C_TYPE_DOUBLE */
			    ret =
				db_CatValArray_get_value_double(&cvarr, cat,
								&dval);
			    obsVect[i][2] = dval;
			    obs_mean[i] = dval;
			}
			if (ret != DB_OK) {
			    G_warning(_("No record for point (cat = %d)"),
				      cat);
			    continue;
			}
		    }
		    else {
			obsVect[i][2] = observ[i].coordZ;
			obs_mean[i] = observ[i].coordZ;
		    }
		}		/* i index */

		/* Mean calculation for every point less the last one */
		mean_reg = calc_mean(obs_mean, ndata - 1);

		for (i = 0; i < ndata; i++)
		    obsVect[i][2] -= mean_reg;

		/* This is left out */
		out_x = observ[ndata - 1].coordX;
		out_y = observ[ndata - 1].coordY;
		out_z = obsVect[ndata - 1][2];

		if (bilin) {	/* Bilinear interpolation */
		    normalDefBilin(N, TN, Q, obsVect, passWE, passNS, nsplx,
				   nsply, region.west, region.south,
				   ndata - 1, nparam_spl, BW);
		    nCorrectGrad(N, lambda[lbd], nsplx, nsply, passWE,
				 passNS);
		}
		else {		/* Bicubic interpolation */
		    normalDefBicubic(N, TN, Q, obsVect, passWE, passNS, nsplx,
				     nsply, region.west, region.south,
				     ndata - 1, nparam_spl, BW);
		    nCorrectGrad(N, lambda[lbd], nsplx, nsply, passWE,
				 passNS);
		}

		/* 
		   if (bilin) interpolation (&interp, P_BILINEAR);
		   else interpolation (&interp, P_BICUBIC);
		 */
		G_set_verbose(G_verbose_min());
		G_math_solver_cholesky_sband(N, parVect, TN, nparam_spl, BW);
		G_set_verbose(verbosity);

		/* Estimation of j-point */
		if (bilin)
		    stat_vect.estima[j] =
			dataInterpolateBilin(out_x, out_y, passWE, passNS,
					     nsplx, nsply, region.west,
					     region.south, parVect);

		else
		    stat_vect.estima[j] =
			dataInterpolateBilin(out_x, out_y, passWE, passNS,
					     nsplx, nsply, region.west,
					     region.south, parVect);

		/* Difference between estimated and observated i-point */
		stat_vect.error[j] = out_z - stat_vect.estima[j];
		G_debug(1, "CrossCorrelation: stat_vect.error[%d]  =  %lf", j,
			stat_vect.error[j]);

		/* Once the last value is left out, it is swapped with j-value */
		observ = swap(observ, j, ndata - 1);

		G_percent(j, ndata, 2);
	    }

	    mean[lbd] = calc_mean(stat_vect.error, stat_vect.n_points);
	    rms[lbd] =
		calc_root_mean_square(stat_vect.error, stat_vect.n_points);
	    stdev[lbd] =
		calc_standard_deviation(stat_vect.error, stat_vect.n_points);

	    G_message(_("Mean = %.5lf"), mean[lbd]);
	    G_message(_("Root Mean Square (RMS) = %.5lf"),
		      rms[lbd]);
	    G_message("---");
	}			/* ENDFOR each lambda value */

	G_free_matrix(N);
	G_free_vector(TN);
	G_free_vector(Q);
	G_free_matrix(obsVect);
	G_free_vector(parVect);
#ifdef nodef
	/*TODO: if the minimum lambda is wanted, the function declaration must be changed */
	/* At this moment, consider rms only */
	rms_min = find_minimum(rms, &lbd_min);
	stdev_min = find_minimum(stdev, &lbd_min);

	/* Writing some output */
	G_message(_("Different number of splines and lambda_i values have "
		    "been taken for the cross correlation"));
	G_message(_("The minimum value for the test (rms=%lf) was "
		    "obtained with: lambda_i = %.3f"),
		  rms_min,
		  lambda[lbd_min]);

	*lambda_min = lambda[lbd_min];
#endif

	G_message(_("Table of results:"));
	fprintf(stdout, _("    lambda |       mean |        rms |\n"));
	for (lbd = 0; lbd < PARAM_LAMBDA; lbd++) {
	    fprintf(stdout, " %9.5f | %10.4f | %10.4f |\n", lambda[lbd],
		    mean[lbd], rms[lbd]);
	}
	
	G_free_vector(mean);
	G_free_vector(rms);
    }				/* ENDIF (ndata > 0) */
    else
	G_warning(_("No point lies into the current region"));

    G_free(observ);
    return TRUE;
}
コード例 #2
0
ファイル: area_area.c プロジェクト: rashadkm/grass_cmake
int area_area(struct Map_info *In, int *field, struct Map_info *Tmp,
	      struct Map_info *Out, struct field_info *Fi,
	      dbDriver * driver, int operator, int *ofield,
	      ATTRIBUTES * attr, struct ilist *BList, double snap)
{
    int ret, input, line, nlines, area, nareas;
    int in_area, in_centr, out_cat;
    struct line_pnts *Points;
    struct line_cats *Cats;
    CENTR *Centr;
    char buf[1000];
    dbString stmt;
    int nmodif;
    int verbose;

    verbose = G_verbose();

    Points = Vect_new_line_struct();
    Cats = Vect_new_cats_struct();

    /* optional snap */
    if (snap > 0) {
	int i, j, snapped_lines = 0;
	struct bound_box box;
	struct boxlist *boxlist = Vect_new_boxlist(0);
	struct ilist *reflist = Vect_new_list();
	
	G_message(_("Snapping boundaries with %g ..."), snap);

	/* snap boundaries in B to boundaries in A,
	 * not modifying boundaries in A */

	if (BList->n_values > 1)
	    qsort(BList->value, BList->n_values, sizeof(int), cmp_int);

	snapped_lines = 0;
	nlines = BList->n_values;
	for (i = 0; i < nlines; i++) {
	    line = BList->value[i];
	    Vect_read_line(Tmp, Points, Cats, line);
	    /* select lines by box */
	    Vect_get_line_box(Tmp, line, &box);
	    box.E += snap;
	    box.W -= snap;
	    box.N += snap;
	    box.S -= snap;
	    box.T = 0.0;
	    box.B = 0.0;
	    Vect_select_lines_by_box(Tmp, &box, GV_BOUNDARY, boxlist);
	    
	    if (boxlist->n_values > 0) {
		Vect_reset_list(reflist);
		for (j = 0; j < boxlist->n_values; j++) {
		    int aline = boxlist->id[j];

		    if (!bsearch(&aline, BList->value, BList->n_values,
			sizeof(int), cmp_int)) {
			G_ilist_add(reflist, aline);
		    }
		}
		
		/* snap bline to alines */
		if (Vect_snap_line(Tmp, reflist, Points, snap, 0, NULL, NULL)) {
		    /* rewrite bline*/
		    Vect_delete_line(Tmp, line);
		    ret = Vect_write_line(Tmp, GV_BOUNDARY, Points, Cats);
		    G_ilist_add(BList, ret);
		    snapped_lines++;
		    G_debug(3, "line %d snapped", line);
		}
	    }
	}
	Vect_destroy_boxlist(boxlist);
	Vect_destroy_list(reflist);

	G_verbose_message(n_("%d boundary snapped",
                             "%d boundaries snapped",
                             snapped_lines), snapped_lines);
    }

    /* same procedure like for v.in.ogr:
     * Vect_clean_small_angles_at_nodes() can change the geometry so that new intersections
     * are created. We must call Vect_break_lines(), Vect_remove_duplicates()
     * and Vect_clean_small_angles_at_nodes() until no more small dangles are found */
    do {
	G_message(_("Breaking lines..."));
	Vect_break_lines_list(Tmp, NULL, BList, GV_BOUNDARY, NULL);

	/* Probably not necessary for LINE x AREA */
	G_message(_("Removing duplicates..."));
	Vect_remove_duplicates(Tmp, GV_BOUNDARY, NULL);

	G_message(_("Cleaning boundaries at nodes..."));
	nmodif =
	    Vect_clean_small_angles_at_nodes(Tmp, GV_BOUNDARY, NULL);
    } while (nmodif > 0);

    /* ?: May be result of Vect_break_lines() + Vect_remove_duplicates() any dangle or bridge?
     * In that case, calls to Vect_remove_dangles() and Vect_remove_bridges() would be also necessary */

    G_set_verbose(0);
    /* should be fast, be silent */
    Vect_build_partial(Tmp, GV_BUILD_AREAS);
    G_set_verbose(verbose);
    nlines = Vect_get_num_lines(Tmp);
    ret = 0;
    for (line = 1; line <= nlines; line++) {
	if (!Vect_line_alive(Tmp, line))
	    continue;
	if (Vect_get_line_type(Tmp, line) == GV_BOUNDARY) {
	    int left, rite;
	    
	    Vect_get_line_areas(Tmp, line, &left, &rite);
	    
	    if (left == 0 || rite == 0) {
		/* invalid boundary */
		ret = 1;
		break;
	    }
	}
    }
    if (ret) {
	Vect_remove_dangles(Tmp, GV_BOUNDARY, -1, NULL);
	Vect_remove_bridges(Tmp, NULL, NULL, NULL);
    }

    G_set_verbose(0);
    Vect_build_partial(Tmp, GV_BUILD_NONE);
    Vect_build_partial(Tmp, GV_BUILD_BASE);
    G_set_verbose(verbose);
    G_message(_("Merging lines..."));
    Vect_merge_lines(Tmp, GV_BOUNDARY, NULL, NULL);

    /* Attach islands */
    G_message(_("Attaching islands..."));
    /* can take some time, show messages */
    Vect_build_partial(Tmp, GV_BUILD_ATTACH_ISLES);

    /* Calculate new centroids for all areas */
    nareas = Vect_get_num_areas(Tmp);

    Centr = (CENTR *) G_malloc((nareas + 1) * sizeof(CENTR));	/* index from 1 ! */
    for (area = 1; area <= nareas; area++) {
	ret =
	    Vect_get_point_in_area(Tmp, area, &(Centr[area].x),
				   &(Centr[area].y));
	if (ret < 0) {
	    G_warning(_("Cannot calculate area centroid"));
	    Centr[area].valid = 0;
	}
	else {
	    Centr[area].valid = 1;
	}
    }

    /* Query input maps */
    for (input = 0; input < 2; input++) {
	G_message(_("Querying vector map <%s>..."),
		  Vect_get_full_name(&(In[input])));

	for (area = 1; area <= nareas; area++) {
	    Centr[area].cat[input] = Vect_new_cats_struct();

	    G_percent(area, nareas, 1);

	    in_area =
		Vect_find_area(&(In[input]), Centr[area].x, Centr[area].y);
	    if (in_area > 0) {
		in_centr = Vect_get_area_centroid(&(In[input]), in_area);
		if (in_centr > 0) {
		    int i;

		    Vect_read_line(&(In[input]), NULL, Cats, in_centr);
		    /* Add all cats with original field number */
		    for (i = 0; i < Cats->n_cats; i++) {
			if (Cats->field[i] == field[input]) {
			    ATTR *at;

			    Vect_cat_set(Centr[area].cat[input], ofield[input + 1],
					 Cats->cat[i]);

			    /* Mark as used */
			    at = find_attr(&(attr[input]), Cats->cat[i]);
			    if (!at)
				G_fatal_error(_("Attribute not found"));

			    at->used = 1;
			}
		    }
		}
	    }
	}
    }

    G_message(_("Writing centroids..."));

    db_init_string(&stmt);
    out_cat = 1;
    for (area = 1; area <= nareas; area++) {
	int i;

	G_percent(area, nareas, 1);

	/* check the condition */
	switch (operator) {
	case OP_AND:
	    if (!
		(Centr[area].cat[0]->n_cats > 0 &&
		 Centr[area].cat[1]->n_cats > 0))
		continue;
	    break;
	case OP_OR:
	    if (!
		(Centr[area].cat[0]->n_cats > 0 ||
		 Centr[area].cat[1]->n_cats > 0))
		continue;
	    break;
	case OP_NOT:
	    if (!
		(Centr[area].cat[0]->n_cats > 0 &&
		 !(Centr[area].cat[1]->n_cats > 0)))
		continue;
	    break;
	case OP_XOR:
	    if ((Centr[area].cat[0]->n_cats > 0 &&
		 Centr[area].cat[1]->n_cats > 0) ||
		(!(Centr[area].cat[0]->n_cats > 0) &&
		 !(Centr[area].cat[1]->n_cats > 0)))
		continue;
	    break;
	}

	Vect_reset_line(Points);
	Vect_reset_cats(Cats);

	Vect_append_point(Points, Centr[area].x, Centr[area].y, 0.0);

	if (ofield[0] > 0) {
	    /* Add new cats for all combinations of input cats (-1 in cycle for null) */
	    for (i = -1; i < Centr[area].cat[0]->n_cats; i++) {
		int j;

		if (i == -1 && Centr[area].cat[0]->n_cats > 0)
		    continue;	/* no need to make null */

		for (j = -1; j < Centr[area].cat[1]->n_cats; j++) {
		    if (j == -1 && Centr[area].cat[1]->n_cats > 0)
			continue;	/* no need to make null */

		    if (ofield[0] > 0)
			Vect_cat_set(Cats, ofield[0], out_cat);

		    /* attributes */
		    if (driver) {
			ATTR *at;

			sprintf(buf, "insert into %s values ( %d", Fi->table,
				out_cat);
			db_set_string(&stmt, buf);

			/* cata */
			if (i >= 0) {
			    if (attr[0].columns) {
				at = find_attr(&(attr[0]),
					       Centr[area].cat[0]->cat[i]);
				if (!at)
				    G_fatal_error(_("Attribute not found"));

				if (at->values)
				    db_append_string(&stmt, at->values);
				else
				    db_append_string(&stmt, attr[0].null_values);
			    }
			    else {
				sprintf(buf, ", %d", Centr[area].cat[0]->cat[i]);
				db_append_string(&stmt, buf);
			    }
			}
			else {
			    if (attr[0].columns) {
				db_append_string(&stmt, attr[0].null_values);
			    }
			    else {
				sprintf(buf, ", null");
				db_append_string(&stmt, buf);
			    }
			}

			/* catb */
			if (j >= 0) {
			    if (attr[1].columns) {
				at = find_attr(&(attr[1]),
					       Centr[area].cat[1]->cat[j]);
				if (!at)
				    G_fatal_error(_("Attribute not found"));

				if (at->values)
				    db_append_string(&stmt, at->values);
				else
				    db_append_string(&stmt, attr[1].null_values);
			    }
			    else {
				sprintf(buf, ", %d", Centr[area].cat[1]->cat[j]);
				db_append_string(&stmt, buf);
			    }
			}
			else {
			    if (attr[1].columns) {
				db_append_string(&stmt, attr[1].null_values);
			    }
			    else {
				sprintf(buf, ", null");
				db_append_string(&stmt, buf);
			    }
			}

			db_append_string(&stmt, " )");

			G_debug(3, "%s", db_get_string(&stmt));

			if (db_execute_immediate(driver, &stmt) != DB_OK)
			    G_warning(_("Unable to insert new record: '%s'"),
				      db_get_string(&stmt));
		    }
		    out_cat++;
		}
	    }
	}

	/* Add all cats from input vectors */
	if (ofield[1] > 0 && field[0] > 0) {
	    for (i = 0; i < Centr[area].cat[0]->n_cats; i++) {
		if (Centr[area].cat[0]->field[i] == field[0])
		    Vect_cat_set(Cats, ofield[1], Centr[area].cat[0]->cat[i]);
	    }
	}

	if (ofield[2] > 0 && field[1] > 0 && ofield[1] != ofield[2]) {
	    for (i = 0; i < Centr[area].cat[1]->n_cats; i++) {
		if (Centr[area].cat[1]->field[i] == field[1])
		    Vect_cat_set(Cats, ofield[2], Centr[area].cat[1]->cat[i]);
	    }
	}

	Vect_write_line(Tmp, GV_CENTROID, Points, Cats);
	Vect_write_line(Out, GV_CENTROID, Points, Cats);
    }

    G_set_verbose(0);
    /* should be fast, be silent */
    Vect_build_partial(Tmp, GV_BUILD_CENTROIDS);
    G_set_verbose(verbose);
    /* Copy valid boundaries to final output */
    nlines = Vect_get_num_lines(Tmp);

    for (line = 1; line <= nlines; line++) {
	int i, ltype, side[2], centr[2];

	G_percent(line, nlines, 1);	/* must be before any continue */

	if (!Vect_line_alive(Tmp, line))
	    continue;

	ltype = Vect_read_line(Tmp, Points, Cats, line);
	if (!(ltype & GV_BOUNDARY))
	    continue;

	Vect_get_line_areas(Tmp, line, &side[0], &side[1]);

	for (i = 0; i < 2; i++) {
	    if (side[i] == 0) {	/* This should not happen ! */
		centr[i] = 0;
		continue;
	    }

	    if (side[i] > 0) {
		area = side[i];
	    }
	    else {		/* island */
		area = Vect_get_isle_area(Tmp, abs(side[i]));
	    }

	    if (area > 0)
		centr[i] = Vect_get_area_centroid(Tmp, area);
	    else
		centr[i] = 0;
	}

	if (centr[0] || centr[1])
	    Vect_write_line(Out, GV_BOUNDARY, Points, Cats);
    }

    return 0;
}
コード例 #3
0
ファイル: main.c プロジェクト: AsherBond/MondocosmOS
int main(int argc, char *argv[])
{
    struct Map_info In, Out, Buf;
    struct line_pnts *Points;
    struct line_cats *Cats, *BCats;
    char bufname[GNAME_MAX];
    struct GModule *module;
    struct Option *in_opt, *out_opt, *type_opt, *dista_opt, *distb_opt,
	*angle_opt;
    struct Flag *straight_flag, *nocaps_flag;
    struct Option *tol_opt, *bufcol_opt, *scale_opt, *field_opt;

    int verbose;
    double da, db, dalpha, tolerance, unit_tolerance;
    int type;
    int i, ret, nareas, area, nlines, line;
    char *Areas, *Lines;
    int field;
    struct buf_contours *arr_bc;
    struct buf_contours_pts arr_bc_pts;
    int buffers_count = 0, line_id;
    struct spatial_index si;
    struct bound_box bbox;

    /* Attributes if sizecol is used */
    int nrec, ctype;
    struct field_info *Fi;
    dbDriver *Driver;
    dbCatValArray cvarr;
    double size_val, scale;


    module = G_define_module();
    G_add_keyword(_("vector"));
    G_add_keyword(_("geometry"));
    G_add_keyword(_("buffer"));
    module->description =
	_("Creates a buffer around vector features of given type.");

    in_opt = G_define_standard_option(G_OPT_V_INPUT);

    field_opt = G_define_standard_option(G_OPT_V_FIELD_ALL);
    field_opt->guisection = _("Selection");

    type_opt = G_define_standard_option(G_OPT_V_TYPE);
    type_opt->options = "point,line,boundary,centroid,area";
    type_opt->answer = "point,line,area";
    type_opt->guisection = _("Selection");

    out_opt = G_define_standard_option(G_OPT_V_OUTPUT);
    
    dista_opt = G_define_option();
    dista_opt->key = "distance";
    dista_opt->type = TYPE_DOUBLE;
    dista_opt->required = NO;
    dista_opt->description =
	_("Buffer distance along major axis in map units");
    dista_opt->guisection = _("Distance");

    distb_opt = G_define_option();
    distb_opt->key = "minordistance";
    distb_opt->type = TYPE_DOUBLE;
    distb_opt->required = NO;
    distb_opt->description =
	_("Buffer distance along minor axis in map units");
    distb_opt->guisection = _("Distance");

    angle_opt = G_define_option();
    angle_opt->key = "angle";
    angle_opt->type = TYPE_DOUBLE;
    angle_opt->required = NO;
    angle_opt->answer = "0";
    angle_opt->description = _("Angle of major axis in degrees");
    angle_opt->guisection = _("Distance");

    bufcol_opt = G_define_standard_option(G_OPT_DB_COLUMN);
    bufcol_opt->key = "bufcolumn";
    bufcol_opt->description =
	_("Name of column to use for buffer distances");
    bufcol_opt->guisection = _("Distance");

    scale_opt = G_define_option();
    scale_opt->key = "scale";
    scale_opt->type = TYPE_DOUBLE;
    scale_opt->required = NO;
    scale_opt->answer = "1.0";
    scale_opt->description = _("Scaling factor for attribute column values");
    scale_opt->guisection = _("Distance");

    tol_opt = G_define_option();
    tol_opt->key = "tolerance";
    tol_opt->type = TYPE_DOUBLE;
    tol_opt->required = NO;
    tol_opt->answer = "0.01";
    tol_opt->description =
	_("Maximum distance between theoretical arc and polygon segments as multiple of buffer");
    tol_opt->guisection = _("Distance");

    straight_flag = G_define_flag();
    straight_flag->key = 's';
    straight_flag->description = _("Make outside corners straight");

    nocaps_flag = G_define_flag();
    nocaps_flag->key = 'c';
    nocaps_flag->description = _("Don't make caps at the ends of polylines");

    G_gisinit(argv[0]);
    
    if (G_parser(argc, argv))
	exit(EXIT_FAILURE);

    type = Vect_option_to_types(type_opt);

    if ((dista_opt->answer && bufcol_opt->answer) ||
	(!(dista_opt->answer || bufcol_opt->answer)))
	G_fatal_error(_("Select a buffer distance/minordistance/angle "
			"or column, but not both."));

    if (bufcol_opt->answer)
	G_warning(_("The bufcol option may contain bugs during the cleaning "
		    "step. If you encounter problems, use the debug "
		    "option or clean manually with v.clean tool=break; "
		    "v.category step=0; v.extract -d type=area"));

    if (field_opt->answer)
	field = Vect_get_field_number(&In, field_opt->answer);
    else
	field = -1;
	
    if (bufcol_opt->answer && field == -1)
	G_fatal_error(_("The bufcol option requires a valid layer."));

    tolerance = atof(tol_opt->answer);
    if (tolerance <= 0)
	G_fatal_error(_("The tolerance must be > 0."));

    if (adjust_tolerance(&tolerance))
	G_warning(_("The tolerance was reset to %g"), tolerance);

    scale = atof(scale_opt->answer);
    if (scale <= 0.0)
	G_fatal_error("Illegal scale value");

    da = db = dalpha = 0;
    if (dista_opt->answer) {
	da = atof(dista_opt->answer);

	if (distb_opt->answer)
	    db = atof(distb_opt->answer);
	else
	    db = da;

	if (angle_opt->answer)
	    dalpha = atof(angle_opt->answer);
	else
	    dalpha = 0;

	unit_tolerance = tolerance * MIN(da, db);
	G_verbose_message(_("The tolerance in map units = %g"), unit_tolerance);
    }

    Vect_check_input_output_name(in_opt->answer, out_opt->answer,
				 GV_FATAL_EXIT);

    Points = Vect_new_line_struct();
    Cats = Vect_new_cats_struct();
    BCats = Vect_new_cats_struct();

    Vect_set_open_level(2); /* topology required */

    if (1 > Vect_open_old2(&In, in_opt->answer, "", field_opt->answer))
	G_fatal_error(_("Unable to open vector map <%s>"), in_opt->answer);

    if (0 > Vect_open_new(&Out, out_opt->answer, WITHOUT_Z)) {
	Vect_close(&In);
	G_fatal_error(_("Unable to create vector map <%s>"), out_opt->answer);
    }

    /* open tmp vector for buffers, needed for cleaning */
    sprintf(bufname, "%s_tmp_%d", out_opt->answer, getpid());
    if (0 > Vect_open_new(&Buf, bufname, 0)) {
	Vect_close(&In);
	Vect_close(&Out);
	Vect_delete(out_opt->answer);
	exit(EXIT_FAILURE);
    }
    Vect_build_partial(&Buf, GV_BUILD_BASE);

    /* check and load attribute column data */
    if (bufcol_opt->answer) {
	db_CatValArray_init(&cvarr);

	Fi = Vect_get_field(&In, field);
	if (Fi == NULL)
	    G_fatal_error(_("Database connection not defined for layer %d"),
			  field);

	Driver = db_start_driver_open_database(Fi->driver, Fi->database);
	if (Driver == NULL)
	    G_fatal_error(_("Unable to open database <%s> by driver <%s>"),
			  Fi->database, Fi->driver);

	/* Note do not check if the column exists in the table because it may be expression */

	/* TODO: only select values we need instead of all in column */
	nrec =
	    db_select_CatValArray(Driver, Fi->table, Fi->key,
				  bufcol_opt->answer, NULL, &cvarr);
	if (nrec < 0)
	    G_fatal_error(_("Unable to select data from table <%s>"),
			  Fi->table);
	G_debug(2, "%d records selected from table", nrec);

	ctype = cvarr.ctype;
	if (ctype != DB_C_TYPE_INT && ctype != DB_C_TYPE_DOUBLE)
	    G_fatal_error(_("Column type not supported"));

	db_close_database_shutdown_driver(Driver);

	/* Output cats/values list */
	for (i = 0; i < cvarr.n_values; i++) {
	    if (ctype == DB_C_TYPE_INT) {
		G_debug(4, "cat = %d val = %d", cvarr.value[i].cat,
			cvarr.value[i].val.i);
	    }
	    else if (ctype == DB_C_TYPE_DOUBLE) {
		G_debug(4, "cat = %d val = %f", cvarr.value[i].cat,
			cvarr.value[i].val.d);
	    }
	}
    }

    Vect_copy_head_data(&In, &Out);
    Vect_hist_copy(&In, &Out);
    Vect_hist_command(&Out);


    /* Create buffers' boundaries */
    nlines = nareas = 0;
    if ((type & GV_POINTS) || (type & GV_LINES))
	nlines += Vect_get_num_primitives(&In, type);
    if (type & GV_AREA)
	nareas = Vect_get_num_areas(&In);
    
    if (nlines + nareas == 0) {
	G_warning(_("No features available for buffering. "
	            "Check type option and features available in the input vector."));
	exit(EXIT_SUCCESS);
    }

    buffers_count = 1;
    arr_bc = G_malloc((nlines + nareas + 1) * sizeof(struct buf_contours));

    Vect_spatial_index_init(&si, 0);

    /* Lines (and Points) */
    if ((type & GV_POINTS) || (type & GV_LINES)) {
	int ltype;

	if (nlines > 0)
	    G_message(_("Buffering lines..."));
	for (line = 1; line <= nlines; line++) {
	    int cat;

	    G_debug(2, "line = %d", line);
	    G_percent(line, nlines, 2);
	    
	    if (!Vect_line_alive(&In, line))
		continue;

	    ltype = Vect_read_line(&In, Points, Cats, line);
	    if (!(ltype & type))
		continue;

	    if (field > 0 && !Vect_cat_get(Cats, field, &cat))
		continue;

	    if (bufcol_opt->answer) {
		ret = db_CatValArray_get_value_di(&cvarr, cat, &size_val);
		if (ret != DB_OK) {
		    G_warning(_("No record for category %d in table <%s>"),
			      cat, Fi->table);
		    continue;
		}

		if (size_val < 0.0) {
		    G_warning(_("Attribute is of invalid size (%.3f) for category %d"),
			      size_val, cat);
		    continue;
		}

		if (size_val == 0.0)
		    continue;

		da = size_val * scale;
		db = da;
		dalpha = 0;
		unit_tolerance = tolerance * MIN(da, db);

		G_debug(2, "    dynamic buffer size = %.2f", da);
		G_debug(2, _("The tolerance in map units: %g"),
			unit_tolerance);
	    }
	    
	    Vect_line_prune(Points);
	    if (ltype & GV_POINTS || Points->n_points == 1) {
		Vect_point_buffer2(Points->x[0], Points->y[0], da, db, dalpha,
				   !(straight_flag->answer), unit_tolerance,
				   &(arr_bc_pts.oPoints));

		Vect_write_line(&Out, GV_BOUNDARY, arr_bc_pts.oPoints, BCats);
		line_id = Vect_write_line(&Buf, GV_BOUNDARY, arr_bc_pts.oPoints, Cats);
		Vect_destroy_line_struct(arr_bc_pts.oPoints);
		/* add buffer to spatial index */
		Vect_get_line_box(&Buf, line_id, &bbox);
		Vect_spatial_index_add_item(&si, buffers_count, &bbox);
		arr_bc[buffers_count].outer = line_id;
		arr_bc[buffers_count].inner_count = 0;
		arr_bc[buffers_count].inner = NULL;
		buffers_count++;

	    }
	    else {
		Vect_line_buffer2(Points, da, db, dalpha,
				  !(straight_flag->answer),
				  !(nocaps_flag->answer), unit_tolerance,
				  &(arr_bc_pts.oPoints),
				  &(arr_bc_pts.iPoints),
				  &(arr_bc_pts.inner_count));

		Vect_write_line(&Out, GV_BOUNDARY, arr_bc_pts.oPoints, BCats);
		line_id = Vect_write_line(&Buf, GV_BOUNDARY, arr_bc_pts.oPoints, Cats);
		Vect_destroy_line_struct(arr_bc_pts.oPoints);
		/* add buffer to spatial index */
		Vect_get_line_box(&Buf, line_id, &bbox);
		Vect_spatial_index_add_item(&si, buffers_count, &bbox);
		arr_bc[buffers_count].outer = line_id;

		arr_bc[buffers_count].inner_count = arr_bc_pts.inner_count;
		if (arr_bc_pts.inner_count > 0) {
		    arr_bc[buffers_count].inner = G_malloc(arr_bc_pts.inner_count * sizeof(int));
		    for (i = 0; i < arr_bc_pts.inner_count; i++) {
			Vect_write_line(&Out, GV_BOUNDARY, arr_bc_pts.iPoints[i], BCats);
			line_id = Vect_write_line(&Buf, GV_BOUNDARY, arr_bc_pts.iPoints[i], Cats);
			Vect_destroy_line_struct(arr_bc_pts.iPoints[i]);
			/* add buffer to spatial index */
			Vect_get_line_box(&Buf, line_id, &bbox);
			Vect_spatial_index_add_item(&si, buffers_count, &bbox);
			arr_bc[buffers_count].inner[i] = line_id;
		    }
		    G_free(arr_bc_pts.iPoints);
		}
		buffers_count++;
	    }
	}
    }

    /* Areas */
    if (type & GV_AREA) {
	int centroid;

	if (nareas > 0) 
	    G_message(_("Buffering areas..."));
	for (area = 1; area <= nareas; area++) {
	    int cat;

	    G_percent(area, nareas, 2);
	    
	    if (!Vect_area_alive(&In, area))
		continue;
	    
	    centroid = Vect_get_area_centroid(&In, area);
	    if (centroid == 0)
		continue;

	    Vect_read_line(&In, NULL, Cats, centroid);
	    if (field > 0 && !Vect_cat_get(Cats, field, &cat))
		continue;

	    if (bufcol_opt->answer) {
		ret = db_CatValArray_get_value_di(&cvarr, cat, &size_val);
		if (ret != DB_OK) {
		    G_warning(_("No record for category %d in table <%s>"),
			      cat, Fi->table);
		    continue;
		}

		if (size_val < 0.0) {
		    G_warning(_("Attribute is of invalid size (%.3f) for category %d"),
			      size_val, cat);
		    continue;
		}

		if (size_val == 0.0)
		    continue;

		da = size_val * scale;
		db = da;
		dalpha = 0;
		unit_tolerance = tolerance * MIN(da, db);

		G_debug(2, "    dynamic buffer size = %.2f", da);
		G_debug(2, _("The tolerance in map units: %g"),
			unit_tolerance);
	    }

	    Vect_area_buffer2(&In, area, da, db, dalpha,
			      !(straight_flag->answer),
			      !(nocaps_flag->answer), unit_tolerance,
			      &(arr_bc_pts.oPoints),
			      &(arr_bc_pts.iPoints),
			      &(arr_bc_pts.inner_count));

	    Vect_write_line(&Out, GV_BOUNDARY, arr_bc_pts.oPoints, BCats);
	    line_id = Vect_write_line(&Buf, GV_BOUNDARY, arr_bc_pts.oPoints, Cats);
	    Vect_destroy_line_struct(arr_bc_pts.oPoints);
	    /* add buffer to spatial index */
	    Vect_get_line_box(&Buf, line_id, &bbox);
	    Vect_spatial_index_add_item(&si, buffers_count, &bbox);
	    arr_bc[buffers_count].outer = line_id;

	    arr_bc[buffers_count].inner_count = arr_bc_pts.inner_count;
	    if (arr_bc_pts.inner_count > 0) {
		arr_bc[buffers_count].inner = G_malloc(arr_bc_pts.inner_count * sizeof(int));
		for (i = 0; i < arr_bc_pts.inner_count; i++) {
		    Vect_write_line(&Out, GV_BOUNDARY, arr_bc_pts.iPoints[i], BCats);
		    line_id = Vect_write_line(&Buf, GV_BOUNDARY, arr_bc_pts.iPoints[i], Cats);
		    Vect_destroy_line_struct(arr_bc_pts.iPoints[i]);
		    /* add buffer to spatial index */
		    Vect_get_line_box(&Buf, line_id, &bbox);
		    Vect_spatial_index_add_item(&si, buffers_count, &bbox);
		    arr_bc[buffers_count].inner[i] = line_id;
		}
		G_free(arr_bc_pts.iPoints);
	    }
	    buffers_count++;
	}
    }

    verbose = G_verbose();

    G_message(_("Cleaning buffers..."));
    
    /* Break lines */
    G_message(_("Building parts of topology..."));
    Vect_build_partial(&Out, GV_BUILD_BASE);

    G_message(_("Snapping boundaries..."));
    Vect_snap_lines(&Out, GV_BOUNDARY, 1e-7, NULL);

    G_message(_("Breaking polygons..."));
    Vect_break_polygons(&Out, GV_BOUNDARY, NULL);

    G_message(_("Removing duplicates..."));
    Vect_remove_duplicates(&Out, GV_BOUNDARY, NULL);

    do {
	G_message(_("Breaking boundaries..."));
	Vect_break_lines(&Out, GV_BOUNDARY, NULL);

	G_message(_("Removing duplicates..."));
	Vect_remove_duplicates(&Out, GV_BOUNDARY, NULL);

	G_message(_("Cleaning boundaries at nodes"));

    } while (Vect_clean_small_angles_at_nodes(&Out, GV_BOUNDARY, NULL) > 0);

    /* Dangles and bridges don't seem to be necessary if snapping is small enough. */
    /* Still needed for larger buffer distances ? */

    /*
    G_message(_("Removing dangles..."));
    Vect_remove_dangles(&Out, GV_BOUNDARY, -1, NULL);

    G_message (_("Removing bridges..."));
    Vect_remove_bridges(&Out, NULL);
    */

    G_message(_("Attaching islands..."));
    Vect_build_partial(&Out, GV_BUILD_ATTACH_ISLES);

    /* Calculate new centroids for all areas */
    nareas = Vect_get_num_areas(&Out);
    Areas = (char *)G_calloc(nareas + 1, sizeof(char));
    G_message(_("Calculating centroids for areas..."));
    G_percent(0, nareas, 2);
    for (area = 1; area <= nareas; area++) {
	double x, y;

	G_percent(area, nareas, 2);

	G_debug(3, "area = %d", area);

	if (!Vect_area_alive(&Out, area))
	    continue;

	ret = Vect_get_point_in_area(&Out, area, &x, &y);
	if (ret < 0) {
	    G_warning(_("Cannot calculate area centroid"));
	    continue;
	}

	ret = point_in_buffer(arr_bc, &si, &Buf, x, y);

	if (ret) {
	    G_debug(3, "  -> in buffer");
	    Areas[area] = 1;
	}
    }

    /* Make a list of boundaries to be deleted (both sides inside) */
    nlines = Vect_get_num_lines(&Out);
    G_debug(3, "nlines = %d", nlines);
    Lines = (char *)G_calloc(nlines + 1, sizeof(char));

    G_message(_("Generating list of boundaries to be deleted..."));
    for (line = 1; line <= nlines; line++) {
	int j, side[2], areas[2];

	G_percent(line, nlines, 2);

	G_debug(3, "line = %d", line);

	if (!Vect_line_alive(&Out, line))
	    continue;

	Vect_get_line_areas(&Out, line, &side[0], &side[1]);

	for (j = 0; j < 2; j++) {
	    if (side[j] == 0) {	/* area/isle not build */
		areas[j] = 0;
	    }
	    else if (side[j] > 0) {	/* area */
		areas[j] = side[j];
	    }
	    else {		/* < 0 -> island */
		areas[j] = Vect_get_isle_area(&Out, abs(side[j]));
	    }
	}

	G_debug(3, " areas = %d , %d -> Areas = %d, %d", areas[0], areas[1],
		Areas[areas[0]], Areas[areas[1]]);
	if (Areas[areas[0]] && Areas[areas[1]])
	    Lines[line] = 1;
    }
    G_free(Areas);

    /* Delete boundaries */
    G_message(_("Deleting boundaries..."));
    for (line = 1; line <= nlines; line++) {
	G_percent(line, nlines, 2);
	
	if (!Vect_line_alive(&Out, line))
	    continue;

	if (Lines[line]) {
	    G_debug(3, " delete line %d", line);
	    Vect_delete_line(&Out, line);
	}
	else {
	    /* delete incorrect boundaries */
	    int side[2];

	    Vect_get_line_areas(&Out, line, &side[0], &side[1]);
	    
	    if (!side[0] && !side[1])
		Vect_delete_line(&Out, line);
	}
    }

    G_free(Lines);

    /* Create new centroids */
    Vect_reset_cats(Cats);
    Vect_cat_set(Cats, 1, 1);
    nareas = Vect_get_num_areas(&Out);

    G_message(_("Calculating centroids for areas..."));    
    for (area = 1; area <= nareas; area++) {
	double x, y;

	G_percent(area, nareas, 2);

	G_debug(3, "area = %d", area);

	if (!Vect_area_alive(&Out, area))
	    continue;

	ret = Vect_get_point_in_area(&Out, area, &x, &y);
	if (ret < 0) {
	    G_warning(_("Cannot calculate area centroid"));
	    continue;
	}

	ret = point_in_buffer(arr_bc, &si, &Buf, x, y);

	if (ret) {
	    Vect_reset_line(Points);
	    Vect_append_point(Points, x, y, 0.);
	    Vect_write_line(&Out, GV_CENTROID, Points, Cats);
	}
    }

    /* free arr_bc[] */
    /* will only slow down the module
       for (i = 0; i < buffers_count; i++) {
       Vect_destroy_line_struct(arr_bc[i].oPoints);
       for (j = 0; j < arr_bc[i].inner_count; j++)
       Vect_destroy_line_struct(arr_bc[i].iPoints[j]);
       G_free(arr_bc[i].iPoints);
       } */

    Vect_spatial_index_destroy(&si);
    Vect_close(&Buf);
    Vect_delete(bufname);

    G_set_verbose(verbose);

    Vect_close(&In);

    Vect_build_partial(&Out, GV_BUILD_NONE);
    Vect_build(&Out);
    Vect_close(&Out);

    exit(EXIT_SUCCESS);
}