//---------------------------------------------------------------------------------------
// Initialize Data Projectors - private
void CForwardProjectionAlgorithm::_init()
{
// forward projection data projector
m_pForwardProjector = dispatchDataProjector(
m_pProjector,
SinogramMaskPolicy(m_pSinogramMask), // sinogram mask
ReconstructionMaskPolicy(m_pVolumeMask), // reconstruction mask
DefaultFPPolicy(m_pVolume, m_pSinogram), // forward projection
m_bUseSinogramMask, m_bUseVolumeMask, true // options on/off
);
}
//----------------------------------------------------------------------------------------
// Iterate
void CBackProjectionAlgorithm::run(int _iNrIterations)
{
// check initialized
ASTRA_ASSERT(m_bIsInitialized);
m_bShouldAbort = false;
CDataProjectorInterface* pBackProjector;
pBackProjector = dispatchDataProjector(
m_pProjector,
SinogramMaskPolicy(m_pSinogramMask), // sinogram mask
ReconstructionMaskPolicy(m_pReconstructionMask), // reconstruction mask
DefaultBPPolicy(m_pReconstruction, m_pSinogram), // backprojection
m_bUseSinogramMask, m_bUseReconstructionMask, true // options on/off
);
m_pReconstruction->setData(0.0f);
pBackProjector->project();
ASTRA_DELETE(pBackProjector);
}
//----------------------------------------------------------------------------------------
// Iterate
void CCglsAlgorithm::run(int _iNrIterations)
{
// check initialized
ASTRA_ASSERT(m_bIsInitialized);
// data projectors
CDataProjectorInterface* pForwardProjector;
CDataProjectorInterface* pFirstForwardProjector;
CDataProjectorInterface* pBackProjector;
// Clear reconstruction volume.
if (m_bClearReconstruction) {
m_pReconstruction->setData(0.0f);
}
// forward projection data projector
if (m_bUseJacobiPreconditioner) {
// w = A t
pForwardProjector = dispatchDataProjector(
m_pProjector,
SinogramMaskPolicy(m_pSinogramMask), // sinogram mask
ReconstructionMaskPolicy(m_pReconstructionMask), // reconstruction mask
DefaultFPPolicy(t, w), // forward projection
m_bUseSinogramMask, m_bUseReconstructionMask, true // options on/off
);
} else {
// w = A p
pForwardProjector = dispatchDataProjector(
m_pProjector,
SinogramMaskPolicy(m_pSinogramMask), // sinogram mask
ReconstructionMaskPolicy(m_pReconstructionMask), // reconstruction mask
DefaultFPPolicy(p, w), // forward projection
m_bUseSinogramMask, m_bUseReconstructionMask, true // options on/off
);
}
// backprojection data projector
pBackProjector = dispatchDataProjector(
m_pProjector,
SinogramMaskPolicy(m_pSinogramMask), // sinogram mask
ReconstructionMaskPolicy(m_pReconstructionMask), // reconstruction mask
DefaultBPPolicy(z, r), // backprojection
m_bUseSinogramMask, m_bUseReconstructionMask, true // options on/off
);
// First forward projector to compute the Jacobi preconditioner, which
// is just the norm squares of the columns of the projection matrix A
// (it is diagonal of A' * A)
pFirstForwardProjector = dispatchDataProjector(
m_pProjector,
SinogramMaskPolicy(m_pSinogramMask), // sinogram mask
ReconstructionMaskPolicy(m_pReconstructionMask), // reconstruction mask
TotalPixelWeightPolicy(c, false, true), // forward projection
m_bUseSinogramMask, m_bUseReconstructionMask, true // options on/off
);
// Compute the Jacobi preconditioner.
if (m_bUseJacobiPreconditioner) {
c->setData(0.f);
pFirstForwardProjector->project();
// Compute sqrt
c->sqrt();
}
int i;
if (m_iIteration == 0) {
// r = b;
r->copyData(m_pSinogram->getData());
// w = A*x0
p->copyData(m_pReconstruction->getData());
pForwardProjector->project();
// r = b - A*x0
*r -= *w;
// z = A' * (b - A * x0) = A' * r
z->setData(0.0f);
pBackProjector->project();
// CHECK
//if (m_bUseMinConstraint)
// z->clampMin(m_fMinValue);
//if (m_bUseMaxConstraint)
// z->clampMax(m_fMaxValue);
// Precondition?
if (m_bUseJacobiPreconditioner) {
*z /= *c;
}
// p = z;
p->copyData(z->getData());
// gamma = dot(z,z);
gamma = 0.0f;
for (i = 0; i < z->getSize(); ++i) {
gamma += z->getData()[i] * z->getData()[i];
}
m_iIteration++;
}
// start iterations
//for (int iIteration = _iNrIterations-1; iIteration >= 0; --iIteration) {
for (int iIteration = 0; iIteration < _iNrIterations; ++iIteration) {
// start timer
m_ulTimer = CPlatformDepSystemCode::getMSCount();
if (m_bUseJacobiPreconditioner) {
// t = C^-1 p
t->copyData(p->getData());
*t /= *c;
}
// w = A*p (or A*t if precondioning)
w->setData(0);
pForwardProjector->project();
// alpha = gamma/dot(w,w);
float32 tmp = 0;
for (i = 0; i < w->getSize(); ++i) {
tmp += w->getData()[i] * w->getData()[i];
}
alpha = gamma / tmp;
if (m_bUseJacobiPreconditioner) {
// x = x + alpha*t;
for (i = 0; i < m_pReconstruction->getSize(); ++i) {
m_pReconstruction->getData()[i] += alpha * t->getData()[i];
}
} else {
// x = x + alpha*p;
for (i = 0; i < m_pReconstruction->getSize(); ++i) {
m_pReconstruction->getData()[i] += alpha * p->getData()[i];
}
}
// r = r - alpha*w;
for (i = 0; i < r->getSize(); ++i) {
r->getData()[i] -= alpha * w->getData()[i];
}
// z = A'*r;
z->setData(0.0f);
pBackProjector->project();
// Precondition?
if (m_bUseJacobiPreconditioner) {
// z = C^-1 C
*z /= *c;
}
// CHECKME: should these be here?
// This was z. CHECK
if (m_bUseMinConstraint)
m_pReconstruction->clampMin(m_fMinValue);
if (m_bUseMaxConstraint)
m_pReconstruction->clampMax(m_fMaxValue);
// beta = 1/gamma;
beta = 1.0f / gamma;
// gamma = dot(z,z);
gamma = 0;
for (i = 0; i < z->getSize(); ++i) {
gamma += z->getData()[i] * z->getData()[i];
}
// beta = gamma*beta;
beta *= gamma;
// p = z + beta*p;
for (i = 0; i < z->getSize(); ++i) {
p->getData()[i] = z->getData()[i] + beta * p->getData()[i];
}
// end timer
m_ulTimer = CPlatformDepSystemCode::getMSCount() - m_ulTimer;
// Compute metrics.
computeIterationMetrics(iIteration, _iNrIterations, r);
m_iIteration++;
}
ASTRA_DELETE(pForwardProjector);
ASTRA_DELETE(pBackProjector);
ASTRA_DELETE(pFirstForwardProjector);
//if (m_iIteration == 0) {
// // r = b;
// r->copyData(m_pSinogram->getData());
// // z = A'*b;
// z->setData(0.0f);
// pBackProjector->project();
// // CHECK
// //if (m_bUseMinConstraint)
// // z->clampMin(m_fMinValue);
// //if (m_bUseMaxConstraint)
// // z->clampMax(m_fMaxValue);
// // p = z;
// p->copyData(z->getData());
// // gamma = dot(z,z);
// gamma = 0.0f;
// for (i = 0; i < z->getSize(); ++i) {
// gamma += z->getData()[i] * z->getData()[i];
// }
//
// m_iIteration++;
//}
//// start iterations
////for (int iIteration = _iNrIterations-1; iIteration >= 0; --iIteration) {
//for (int iIteration = 0; iIteration < _iNrIterations; ++iIteration) {
// // start timer
// m_ulTimer = CPlatformDepSystemCode::getMSCount();
//
// // w = A*p;
// pForwardProjector->project();
//
// // alpha = gamma/dot(w,w);
// float32 tmp = 0;
// for (i = 0; i < w->getSize(); ++i) {
// tmp += w->getData()[i] * w->getData()[i];
// }
// alpha = gamma / tmp;
// // x = x + alpha*p;
// for (i = 0; i < m_pReconstruction->getSize(); ++i) {
// m_pReconstruction->getData()[i] += alpha * p->getData()[i];
// }
// // r = r - alpha*w;
// for (i = 0; i < r->getSize(); ++i) {
// r->getData()[i] -= alpha * w->getData()[i];
// }
// // z = A'*r;
// z->setData(0.0f);
// pBackProjector->project();
// // CHECKME: should these be here?
// // This was z. CHECK
// if (m_bUseMinConstraint)
// m_pReconstruction->clampMin(m_fMinValue);
// if (m_bUseMaxConstraint)
// m_pReconstruction->clampMax(m_fMaxValue);
// // beta = 1/gamma;
// beta = 1.0f / gamma;
// // gamma = dot(z,z);
// gamma = 0;
// for (i = 0; i < z->getSize(); ++i) {
// gamma += z->getData()[i] * z->getData()[i];
// }
// // beta = gamma*beta;
// beta *= gamma;
// // p = z + beta*p;
// for (i = 0; i < z->getSize(); ++i) {
// p->getData()[i] = z->getData()[i] + beta * p->getData()[i];
// }
//
// // end timer
// m_ulTotalTime += CPlatformDepSystemCode::getMSCount() - m_ulTimer;
// // Compute metrics.
// computeIterationMetrics(iIteration, _iNrIterations);
// m_iIteration++;
//}
}
//----------------------------------------------------------------------------------------
// Iterate
void CSirtAlgorithm::run(int _iNrIterations)
{
// check initialized
ASTRA_ASSERT(m_bIsInitialized);
m_bShouldAbort = false;
int iIteration = 0;
// data projectors
CDataProjectorInterface* pForwardProjector;
CDataProjectorInterface* pBackProjector;
CDataProjectorInterface* pFirstForwardProjector;
m_pTotalRayLength->setData(0.0f);
m_pTotalPixelWeight->setData(0.0f);
// forward projection data projector
pForwardProjector = dispatchDataProjector(
m_pProjector,
SinogramMaskPolicy(m_pSinogramMask), // sinogram mask
ReconstructionMaskPolicy(m_pReconstructionMask), // reconstruction mask
DiffFPPolicy(m_pReconstruction, m_pDiffSinogram, m_pSinogram), // forward projection with difference calculation
m_bUseSinogramMask, m_bUseReconstructionMask, true // options on/off
);
// backprojection data projector
pBackProjector = dispatchDataProjector(
m_pProjector,
SinogramMaskPolicy(m_pSinogramMask), // sinogram mask
ReconstructionMaskPolicy(m_pReconstructionMask), // reconstruction mask
DefaultBPPolicy(m_pTmpVolume, m_pDiffSinogram), // backprojection
m_bUseSinogramMask, m_bUseReconstructionMask, true // options on/off
);
// first time forward projection data projector,
// also computes total pixel weight and total ray length
pFirstForwardProjector = dispatchDataProjector(
m_pProjector,
SinogramMaskPolicy(m_pSinogramMask), // sinogram mask
ReconstructionMaskPolicy(m_pReconstructionMask), // reconstruction mask
Combine3Policy<DiffFPPolicy, TotalPixelWeightPolicy, TotalRayLengthPolicy>( // 3 basic operations
DiffFPPolicy(m_pReconstruction, m_pDiffSinogram, m_pSinogram), // forward projection with difference calculation
TotalPixelWeightPolicy(m_pTotalPixelWeight), // calculate the total pixel weights
TotalRayLengthPolicy(m_pTotalRayLength)), // calculate the total ray lengths
m_bUseSinogramMask, m_bUseReconstructionMask, true // options on/off
);
// forward projection, difference calculation and raylength/pixelweight computation
pFirstForwardProjector->project();
float32* pfT = m_pTotalPixelWeight->getData();
for (int i = 0; i < m_pTotalPixelWeight->getSize(); ++i) {
float32 x = pfT[i];
if (x < -eps || x > eps)
x = 1.0f / x;
else
x = 0.0f;
pfT[i] = x;
}
pfT = m_pTotalRayLength->getData();
for (int i = 0; i < m_pTotalRayLength->getSize(); ++i) {
float32 x = pfT[i];
if (x < -eps || x > eps)
x = 1.0f / x;
else
x = 0.0f;
pfT[i] = x;
}
// divide by line weights
(*m_pDiffSinogram) *= (*m_pTotalRayLength);
// backprojection
m_pTmpVolume->setData(0.0f);
pBackProjector->project();
// divide by pixel weights
(*m_pTmpVolume) *= (*m_pTotalPixelWeight);
(*m_pReconstruction) += (*m_pTmpVolume);
if (m_bUseMinConstraint)
m_pReconstruction->clampMin(m_fMinValue);
if (m_bUseMaxConstraint)
m_pReconstruction->clampMax(m_fMaxValue);
// update iteration count
m_iIterationCount++;
iIteration++;
// iteration loop
for (; iIteration < _iNrIterations && !m_bShouldAbort; ++iIteration) {
// forward projection and difference calculation
pForwardProjector->project();
// divide by line weights
(*m_pDiffSinogram) *= (*m_pTotalRayLength);
// backprojection
m_pTmpVolume->setData(0.0f);
pBackProjector->project();
// divide by pixel weights
(*m_pTmpVolume) *= (*m_pTotalPixelWeight);
(*m_pReconstruction) += (*m_pTmpVolume);
if (m_bUseMinConstraint)
m_pReconstruction->clampMin(m_fMinValue);
if (m_bUseMaxConstraint)
m_pReconstruction->clampMax(m_fMaxValue);
// update iteration count
m_iIterationCount++;
}
ASTRA_DELETE(pForwardProjector);
ASTRA_DELETE(pBackProjector);
ASTRA_DELETE(pFirstForwardProjector);
}
//----------------------------------------------------------------------------------------
// Iterate
void CSirtAlgorithm::run(int _iNrIterations)
{
// check initialized
ASTRA_ASSERT(m_bIsInitialized);
m_bShouldAbort = false;
// data projectors
CDataProjectorInterface* pForwardProjector;
CDataProjectorInterface* pBackProjector;
CDataProjectorInterface* pFirstForwardProjector;
// Initialize m_pReconstruction to zero.
if (m_bClearReconstruction) {
m_pReconstruction->setData(0.f);
}
// forward projection data projector
pForwardProjector = dispatchDataProjector(
m_pProjector,
SinogramMaskPolicy(m_pSinogramMask), // sinogram mask
ReconstructionMaskPolicy(m_pReconstructionMask), // reconstruction mask
DiffFPPolicy(m_pReconstruction, m_pDiffSinogram, m_pSinogram), // forward projection with difference calculation
m_bUseSinogramMask, m_bUseReconstructionMask, true // options on/off
);
// backprojection data projector
pBackProjector = dispatchDataProjector(
m_pProjector,
SinogramMaskPolicy(m_pSinogramMask), // sinogram mask
ReconstructionMaskPolicy(m_pReconstructionMask), // reconstruction mask
SIRTBPPolicy(m_pReconstruction, m_pDiffSinogram,
m_pTotalPixelWeight, m_pTotalRayLength, m_fAlpha), // SIRT backprojection
m_bUseSinogramMask, m_bUseReconstructionMask, true // options on/off
);
// first time forward projection data projector,
// also computes total pixel weight and total ray length
pFirstForwardProjector = dispatchDataProjector(
m_pProjector,
SinogramMaskPolicy(m_pSinogramMask), // sinogram mask
ReconstructionMaskPolicy(m_pReconstructionMask), // reconstruction mask
Combine3Policy<DiffFPPolicy, TotalPixelWeightPolicy, TotalRayLengthPolicy>( // 3 basic operations
DiffFPPolicy(m_pReconstruction, m_pDiffSinogram, m_pSinogram), // forward projection with difference calculation
TotalPixelWeightPolicy(m_pTotalPixelWeight), // calculate the total pixel weights
TotalRayLengthPolicy(m_pTotalRayLength)), // calculate the total ray lengths
m_bUseSinogramMask, m_bUseReconstructionMask, true // options on/off
);
// Perform the first forward projection to compute ray lengths and pixel weights
m_pTotalRayLength->setData(0.0f);
m_pTotalPixelWeight->setData(0.0f);
pFirstForwardProjector->project();
// iteration loop, each iteration loops over all available projections
for (int iIteration = 0; iIteration < _iNrIterations && !m_bShouldAbort; ++iIteration) {
// start timer
m_ulTimer = CPlatformDepSystemCode::getMSCount();
// forward projection to compute differences.
pForwardProjector->project();
// backprojection
pBackProjector->project();
// update iteration count
m_iIterationCount++;
if (m_bUseMinConstraint)
m_pReconstruction->clampMin(m_fMinValue);
if (m_bUseMaxConstraint)
m_pReconstruction->clampMax(m_fMaxValue);
// end timer
m_ulTimer = CPlatformDepSystemCode::getMSCount() - m_ulTimer;
// Compute metrics.
computeIterationMetrics(iIteration, _iNrIterations, m_pDiffSinogram);
}
ASTRA_DELETE(pForwardProjector);
ASTRA_DELETE(pBackProjector);
ASTRA_DELETE(pFirstForwardProjector);
//// check initialized
//ASTRA_ASSERT(m_bIsInitialized);
//m_bShouldAbort = false;
//int iIteration = 0;
//// data projectors
//CDataProjectorInterface* pForwardProjector;
//CDataProjectorInterface* pBackProjector;
//CDataProjectorInterface* pFirstForwardProjector;
//m_pTotalRayLength->setData(0.0f);
//m_pTotalPixelWeight->setData(0.0f);
//// forward projection data projector
//pForwardProjector = dispatchDataProjector(
// m_pProjector,
// SinogramMaskPolicy(m_pSinogramMask), // sinogram mask
// ReconstructionMaskPolicy(m_pReconstructionMask), // reconstruction mask
// DiffFPPolicy(m_pReconstruction, m_pDiffSinogram, m_pSinogram), // forward projection with difference calculation
// m_bUseSinogramMask, m_bUseReconstructionMask, true // options on/off
// );
//// backprojection data projector
//pBackProjector = dispatchDataProjector(
// m_pProjector,
// SinogramMaskPolicy(m_pSinogramMask), // sinogram mask
// ReconstructionMaskPolicy(m_pReconstructionMask), // reconstruction mask
// DefaultBPPolicy(m_pTmpVolume, m_pDiffSinogram), // backprojection
// m_bUseSinogramMask, m_bUseReconstructionMask, true // options on/off
// );
//// first time forward projection data projector,
//// also computes total pixel weight and total ray length
//pFirstForwardProjector = dispatchDataProjector(
// m_pProjector,
// SinogramMaskPolicy(m_pSinogramMask), // sinogram mask
// ReconstructionMaskPolicy(m_pReconstructionMask), // reconstruction mask
// Combine3Policy<DiffFPPolicy, TotalPixelWeightPolicy, TotalRayLengthPolicy>( // 3 basic operations
// DiffFPPolicy(m_pReconstruction, m_pDiffSinogram, m_pSinogram), // forward projection with difference calculation
// TotalPixelWeightPolicy(m_pTotalPixelWeight), // calculate the total pixel weights
// TotalRayLengthPolicy(m_pTotalRayLength)), // calculate the total ray lengths
// m_bUseSinogramMask, m_bUseReconstructionMask, true // options on/off
// );
//// forward projection, difference calculation and raylength/pixelweight computation
//pFirstForwardProjector->project();
//float32* pfT = m_pTotalPixelWeight->getData();
//for (int i = 0; i < m_pTotalPixelWeight->getSize(); ++i) {
// float32 x = pfT[i];
// if (x < -eps || x > eps)
// x = 1.0f / x;
// else
// x = 0.0f;
// pfT[i] = x;
//}
//pfT = m_pTotalRayLength->getData();
//for (int i = 0; i < m_pTotalRayLength->getSize(); ++i) {
// float32 x = pfT[i];
// if (x < -eps || x > eps)
// x = 1.0f / x;
// else
// x = 0.0f;
// pfT[i] = x;
//}
//// divide by line weights
//(*m_pDiffSinogram) *= (*m_pTotalRayLength);
//// backprojection
//m_pTmpVolume->setData(0.0f);
//pBackProjector->project();
//// divide by pixel weights
//(*m_pTmpVolume) *= (*m_pTotalPixelWeight);
//(*m_pReconstruction) += (*m_pTmpVolume);
//if (m_bUseMinConstraint)
// m_pReconstruction->clampMin(m_fMinValue);
//if (m_bUseMaxConstraint)
// m_pReconstruction->clampMax(m_fMaxValue);
//// update iteration count
//m_iIterationCount++;
//iIteration++;
//
//// iteration loop
//for (; iIteration < _iNrIterations && !m_bShouldAbort; ++iIteration) {
// // forward projection and difference calculation
// pForwardProjector->project();
// // divide by line weights
// (*m_pDiffSinogram) *= (*m_pTotalRayLength);
// // backprojection
// m_pTmpVolume->setData(0.0f);
// pBackProjector->project();
// // divide by pixel weights
// (*m_pTmpVolume) *= (*m_pTotalPixelWeight);
// (*m_pReconstruction) += (*m_pTmpVolume);
// if (m_bUseMinConstraint)
// m_pReconstruction->clampMin(m_fMinValue);
// if (m_bUseMaxConstraint)
// m_pReconstruction->clampMax(m_fMaxValue);
// // update iteration count
// m_iIterationCount++;
//}
//ASTRA_DELETE(pForwardProjector);
//ASTRA_DELETE(pBackProjector);
//ASTRA_DELETE(pFirstForwardProjector);
}
