C++ (Cpp) SetNormalizationWindowSizeの例

コード例 #1

ファイル: TreephaserLite.cpp プロジェクト: fw1121/Pandoras-Toolbox-for-Bioinformatics

TreephaserLite::TreephaserLite(const ion::FlowOrder& flow_order, const int windowSize)
  : flow_order_(flow_order)
{
  SetNormalizationWindowSize(windowSize);
  for (int i = 0; i < 8; i++) {
    transition_base_[i].resize(flow_order_.num_flows());
    transition_flow_[i].resize(flow_order_.num_flows());
  }
  path_.resize(kNumPaths);
  for (int p = 0; p < kNumPaths; ++p) {
    path_[p].state.resize(flow_order_.num_flows());
    path_[p].prediction.resize(flow_order_.num_flows());
    path_[p].sequence.reserve(2*flow_order_.num_flows());
  }
}

コード例 #2

ファイル: DPTreephaser.cpp プロジェクト: GerritvanNiekerk/TS

DPTreephaser::DPTreephaser(const ion::FlowOrder& flow_order, const int windowSize)
  : flow_order_(flow_order)
{
  SetNormalizationWindowSize(windowSize);
  for (int i = 0; i < 8; i++) {
    transition_base_[i].resize(flow_order_.num_flows());
    transition_flow_[i].resize(flow_order_.num_flows());
  }
  path_.resize(kNumPaths);
  for (int p = 0; p < kNumPaths; ++p) {
    path_[p].state.resize(flow_order_.num_flows());
    path_[p].prediction.resize(flow_order_.num_flows());
    path_[p].sequence.reserve(2*flow_order_.num_flows());
    path_[p].flow2base_pos.resize(flow_order_.num_flows());
    path_[p].base_pos = 0;
  }
  pm_model_available_ = false;
  pm_model_enabled_ = false;
}

コード例 #3

ファイル: DPTreephaser.cpp プロジェクト: Brainiarc7/TS

DPTreephaser::DPTreephaser(const ion::FlowOrder& flow_order, const int windowSize)
  : flow_order_(flow_order)
{
  SetNormalizationWindowSize(windowSize);
  for (int i = 0; i < 8; i++) {
    transition_base_[i].resize(flow_order_.num_flows());
    transition_flow_[i].resize(flow_order_.num_flows());
  }
  path_.resize(kNumPaths);
  for (int p = 0; p < kNumPaths; ++p) {
    path_[p].state.resize(flow_order_.num_flows());
    path_[p].prediction.resize(flow_order_.num_flows());
    path_[p].sequence.reserve(2*flow_order_.num_flows());
    path_[p].calibA.assign(flow_order_.num_flows(), 1.0f);
  }
  pm_model_available_              = false;
  recalibrate_predictions_         = false;
  skip_recal_during_normalization_ = false;
  diagonal_states_        = false;
  
  my_cf_ = -1.0;
  my_ie_ = -1.0;
  my_dr_ = -1.0;
}