int main(int argc, const char* argv[])
{
int result;
SetDiagStream(&NcbiCerr); // send all diagnostic messages to cerr
SetDiagPostLevel(eDiag_Warning);
// SetupCToolkitErrPost(); // reroute C-toolkit err messages to C++ err streams
SetDiagTrace(eDT_Default); // trace messages only when DIAG_TRACE env. var. is set
//#ifdef _DEBUG
// SetDiagPostFlag(eDPF_File);
// SetDiagPostFlag(eDPF_Line);
//#else
UnsetDiagTraceFlag(eDPF_File);
UnsetDiagTraceFlag(eDPF_Line);
//#endif
// C++ object verification
CSerialObject::SetVerifyDataGlobal(eSerialVerifyData_Always);
CObjectIStream::SetVerifyDataGlobal(eSerialVerifyData_Always);
CObjectOStream::SetVerifyDataGlobal(eSerialVerifyData_Always);
// Execute main application function
const CTime start(CTime::eCurrent);
CTime stop;
CAlignmentRefiner refiner;
result = refiner.AppMain(argc, argv, 0, eDS_Default, 0);
// Timing info
stop.SetCurrent();
cout << "\n\n**** Elapsed Time = " << stop.DiffSecond(start) << " sec ****" << endl << endl;
return result;
}
void Cn3DNoWin::Init(void)
{
// turn off some Mesa-related env vars, irrelevant to off-screen rendering and not platform-indepdendent
setenv("MESA_NO_3DNOW", "true", 1);
setenv("MESA_NO_SSE", "true", 1);
// setup the diagnostic stream
SetDiagHandler(DisplayDiagnostic, NULL, NULL);
SetDiagPostLevel(eDiag_Info); // report all messages
SetDiagTrace(eDT_Default); // trace messages only when DIAG_TRACE env. var. is set
UnsetDiagTraceFlag(eDPF_Location);
#ifdef _DEBUG
SetDiagPostFlag(eDPF_File);
SetDiagPostFlag(eDPF_Line);
#else
UnsetDiagTraceFlag(eDPF_File);
UnsetDiagTraceFlag(eDPF_Line);
#endif
// C++ object verification
CSerialObject::SetVerifyDataGlobal(eSerialVerifyData_Always);
CObjectIStream::SetVerifyDataGlobal(eSerialVerifyData_Always);
CObjectOStream::SetVerifyDataGlobal(eSerialVerifyData_Always);
// set up argument processing
CArgDescriptions *argDescr = new CArgDescriptions(false);
argDescr->SetUsageContext(GetArguments().GetProgramName(), "No-Window Cn3D");
// get data from file or network
argDescr->AddOptionalKey("f", "file", "Ncbi-mime-asn1, Biostruc, or Cdd ASN.1 data file", argDescr->eString);
argDescr->AddOptionalKey("d", "id", "MMDB or PDB ID", argDescr->eString);
// model, for network or Biostruc load
argDescr->AddOptionalKey("o", "model", "Model type to use for coordinates", argDescr->eString);
argDescr->SetConstraint("o", (new CArgAllow_Strings)->Allow("alpha")->Allow("single")->Allow("PDB"));
// controls for output
argDescr->AddKey("p", "pngfile", "Output PNG file name", argDescr->eString);
argDescr->AddKey("w", "width", "Output width in pixels", argDescr->eInteger);
argDescr->AddKey("h", "height", "Output height in pixels", argDescr->eInteger);
argDescr->AddFlag("i", "Create interlaced PNG");
// use favorite style
argDescr->AddOptionalKey("s", "style", "Favorite style", argDescr->eString);
SetupArgDescriptions(argDescr);
}
