static rc_t add_include( void *data, const char *my_name )
{
VSchema *my_schema = (VSchema*)data;
rc_t rc = VSchemaAddIncludePath( my_schema, "%s", my_name );
display_rescode( rc, "VSchemaAddIncludePath failed", NULL );
return rc;
}
static rc_t pacbio_load_schema( ld_context *lctx, const char *schema_name )
{
rc_t rc;
if ( pacbio_is_schema_dflt( schema_name ) )
{
rc = VDBManagerMakeSRASchema ( lctx->vdb_mgr, &lctx->schema );
if ( rc != 0 )
LOGERR( klogErr, rc, "cannot create sra-schema" );
if ( rc == 0 )
{
rc = VSchemaParseFile ( lctx->schema, schema_name );
if ( rc != 0 )
PLOGERR( klogErr, ( klogErr, rc, "cannot to parse schema file '$(schema)'",
"schema=%s", schema_name ) );
}
}
else
{
rc = VDBManagerMakeSchema ( lctx->vdb_mgr, &lctx->schema );
if ( rc != 0 )
LOGERR( klogErr, rc, "cannot create sra-schema" );
else
{
char path[ 4096 ];
rc = pacbio_extract_path( lctx->wd, schema_name, path, sizeof path );
if ( rc == 0 )
{
rc = VSchemaAddIncludePath ( lctx->schema, path );
if ( rc != 0 )
PLOGERR( klogErr, ( klogErr, rc, "cannot add schema-include-path '$(path)'",
"path=%s", path ) );
else
{
rc = VSchemaParseFile ( lctx->schema, schema_name );
if ( rc != 0 )
PLOGERR( klogErr, ( klogErr, rc, "cannot to parse schema file '$(schema)'",
"schema=%s", schema_name ) );
}
}
}
}
return rc;
}
rc_t open (param_block * pb)
{
rc_t rc;
rc = KDirectoryNativeDir (&pb->pwd);
if (rc)
LOGERR (klogFatal, rc, "Failed to open file system");
else
{
rc = KDirectoryOpenFileRead (pb->pwd, &pb->file, "%s", pb->file_path);
if (rc)
LOGERR (klogFatal, rc, "Failed to open input file");
else
{
rc = KMMapMakeRead (&pb->mmap, pb->file);
if (rc)
LOGERR (klogFatal, rc, "unable to map file");
else
{
rc = VDBManagerMakeUpdate (&pb->mgr, pb->pwd);
if (rc)
LOGERR (klogFatal, rc, "Failed to open DB Manager");
else
{
rc = VDBManagerMakeSchema (pb->mgr, &pb->schema);
if (rc)
LOGERR (klogFatal, rc, "Failed to create a schema object");
else
{
VSchemaAddIncludePath (pb->schema, "interfaces");
rc = VSchemaParseFile (pb->schema, "%s", pb->schema_path);
if (rc)
LOGERR (klogFatal, rc, "Failed to parse schema");
else
{
rc = VDBManagerCreateTable (pb->mgr, &pb->table, pb->schema,
TYPESPEC, kcmCreate, "%s", pb->table_path);
if (rc)
LOGERR (klogFatal, rc, "Failed to create table");
else
{
rc = VTableCreateCursorWrite (pb->table, &pb->cursor, kcmCreate);
if (rc)
LOGERR (klogFatal, rc, "Failed to create cursor");
else
{
rc = VCursorAddColumn (pb->cursor, &pb->idx, "READ");
if (rc)
LOGERR (klogFatal, rc, "Failed to add READ to cursor");
else
{
rc = VCursorOpen (pb->cursor);
if (rc)
LOGERR (klogFatal, rc, "Failed to open cursor");
else
{
rc = write_rows (pb);
if (rc == 0)
VCursorCommit (pb->cursor);
}
}
VCursorRelease (pb->cursor);
}
VTableRelease (pb->table);
}
}
VSchemaRelease (pb->schema);
}
VDBManagerRelease (pb->mgr);
}
KMMapRelease (pb->mmap);
}
KFileRelease (pb->file);
}
KDirectoryRelease (pb->pwd);
}
return rc;
}
