int main(int argc, char *argv[])
{
struct Zoltan_Timer *zt1, *zt2, *zt3, *zt4;
int i, me;
const int MAINLOOP=20;
MPI_Init(&argc, &argv);
MPI_Comm_rank(MPI_COMM_WORLD, &me);
zt1 = Zoltan_Timer_Create(ZOLTAN_TIME_WALL);
zt2 = Zoltan_Timer_Create(ZOLTAN_TIME_USER);
zt3 = Zoltan_Timer_Create(ZOLTAN_TIME_WALL);
for (i = 0; i < MAINLOOP; i++) {
if (me == 0) printf("\n\n\t****Beginning first test****\n");
first_test(zt1);
if (me == 0) printf("\n\n\t****Beginning second test****\n");
second_test(zt2);
}
if (me == 0) printf("\n\nFINAL RESULTS -- FIRST TEST:\n");
Zoltan_Timer_PrintAll(zt1, 0, MPI_COMM_WORLD, stdout);
if (me == 0) printf("\n\nFINAL RESULTS -- SECOND TEST:\n");
Zoltan_Timer_PrintAll(zt2, 0, MPI_COMM_WORLD, stdout);
/* Copy tests */
Zoltan_Timer_Copy_To(&zt3, zt1);
zt4 = Zoltan_Timer_Copy(zt2);
for (i = 0; i < MAINLOOP; i++) {
if (me == 0) printf("\n\n\t****Beginning first copy test****\n");
first_test(zt3);
if (me == 0) printf("\n\n\t****Beginning second copy test****\n");
second_test(zt4);
}
if (me == 0) printf("\n\nFINAL RESULTS -- FIRST COPY TEST:\n");
Zoltan_Timer_PrintAll(zt3, 0, MPI_COMM_WORLD, stdout);
if (me == 0) printf("\n\nFINAL RESULTS -- SECOND COPY TEST:\n");
Zoltan_Timer_PrintAll(zt4, 0, MPI_COMM_WORLD, stdout);
/* Test printing while timer is still running. */
if (me == 0) printf("\n\n\t****Intermediate print test****\n");
third_test(zt1);
if (me == 0) printf("\n\nFINAL RESULTS -- INTERMEDIATE PRINT TEST:\n");
Zoltan_Timer_PrintAll(zt1, 0, MPI_COMM_WORLD, stdout);
if (me == 0) printf("\n\nTHE END\n");
Zoltan_Timer_Destroy(&zt1);
Zoltan_Timer_Destroy(&zt2);
MPI_Finalize();
return 0;
}
int Zoltan_Timer_Copy_To(ZTIMER **to, ZTIMER *from)
{
ZTIMER *toptr = NULL;
if (!to){
return ZOLTAN_FATAL;
}
if (*to){
Zoltan_Timer_Destroy(to);
}
if (from){
*to = (ZTIMER *)ZOLTAN_MALLOC(sizeof(ZTIMER));
toptr = *to;
toptr->Timer_Flag = from->Timer_Flag;
toptr->Length = from->Length;
toptr->NextTimeStruct = from->NextTimeStruct;
if (toptr->Length > 0){
toptr->Times = (ZTIMER_TS *)ZOLTAN_MALLOC(sizeof(ZTIMER_TS) * toptr->Length);
memcpy(toptr->Times, from->Times, sizeof(ZTIMER_TS) * toptr->Length);
}
else{
toptr->Times = NULL;
}
}
return ZOLTAN_OK;
}
static void Zoltan_Free_Zoltan_Struct_Members(ZZ *zz)
{
Zoltan_Free_Machine_Desc(&(zz->Machine_Desc));
Zoltan_Free_Params(&(zz->Params));
Zoltan_Timer_Destroy(&(zz->ZTime));
Zoltan_Free_Structures(zz); /* Algorithm-specific structures */
Zoltan_LB_Free_Struct(&(zz->LB));
Zoltan_Order_Free_Struct(&(zz->Order));
}
/* Main partitioning function for hypergraph partitioning. */
int Zoltan_PHG_Partition (
ZZ *zz, /* Zoltan data structure */
HGraph *hg, /* Input hypergraph to be partitioned */
int p, /* Input: number partitions to be generated */
float *part_sizes, /* Input: array of length p containing percentages
of work to be assigned to each partition */
Partition parts, /* Input: initial partition #s; aligned with vtx
arrays.
Output: computed partition #s */
PHGPartParams *hgp, /* Input: parameters for hgraph partitioning. */
int level)
{
PHGComm *hgc = hg->comm;
VCycle *vcycle=NULL, *del=NULL;
int i, err = ZOLTAN_OK;
int prevVcnt = 2*hg->dist_x[hgc->nProc_x];
int prevVedgecnt = 2*hg->dist_y[hgc->nProc_y];
char *yo = "Zoltan_PHG_Partition";
static int timer_match = -1, /* Timers for various stages */
timer_coarse = -1, /* Declared static so we can accumulate */
timer_refine = -1, /* times over calls to Zoltan_PHG_Partition */
timer_coarsepart = -1,
timer_project = -1,
timer_vcycle = -1; /* times everything in Vcycle not included
in above timers */
int do_timing = (hgp->use_timers > 1);
int vcycle_timing = (hgp->use_timers > 4);
ZOLTAN_TRACE_ENTER(zz, yo);
if (do_timing) {
if (timer_vcycle < 0)
timer_vcycle = Zoltan_Timer_Init(zz->ZTime, 0, "Vcycle");
if (timer_match < 0)
timer_match = Zoltan_Timer_Init(zz->ZTime, 1, "Matching");
if (timer_coarse < 0)
timer_coarse = Zoltan_Timer_Init(zz->ZTime, 1, "Coarsening");
if (timer_coarsepart < 0)
timer_coarsepart = Zoltan_Timer_Init(zz->ZTime, 1,
"Coarse_Partition");
if (timer_refine < 0)
timer_refine = Zoltan_Timer_Init(zz->ZTime, 1, "Refinement");
if (timer_project < 0)
timer_project = Zoltan_Timer_Init(zz->ZTime, 1, "Project_Up");
ZOLTAN_TIMER_START(zz->ZTime, timer_vcycle, hgc->Communicator);
}
if (!(vcycle = newVCycle(zz, hg, parts, NULL, vcycle_timing))) {
ZOLTAN_PRINT_ERROR (zz->Proc, yo, "VCycle is NULL.");
return ZOLTAN_MEMERR;
}
/****** Coarsening ******/
#define COARSEN_FRACTION_LIMIT 0.9 /* Stop if we don't make much progress */
while ((hg->redl>0) && (hg->dist_x[hgc->nProc_x] > hg->redl)
&& ((hg->dist_x[hgc->nProc_x] < (int) (COARSEN_FRACTION_LIMIT * prevVcnt + 0.5))
|| (hg->dist_y[hgc->nProc_y] < (int) (COARSEN_FRACTION_LIMIT * prevVedgecnt + 0.5)))
&& hg->dist_y[hgc->nProc_y] && hgp->matching) {
int *match = NULL;
VCycle *coarser=NULL;
prevVcnt = hg->dist_x[hgc->nProc_x];
prevVedgecnt = hg->dist_y[hgc->nProc_y];
#ifdef _DEBUG
/* UVC: load balance stats */
Zoltan_PHG_LoadBalStat(zz, hg);
#endif
if (hgp->output_level >= PHG_DEBUG_LIST) {
uprintf(hgc,
"START %3d |V|=%6d |E|=%6d #pins=%6d %d/%s/%s/%s p=%d...\n",
hg->info, hg->nVtx, hg->nEdge, hg->nPins, hg->redl,
hgp->redm_str,
hgp->coarsepartition_str, hgp->refinement_str, p);
if (hgp->output_level > PHG_DEBUG_LIST) {
err = Zoltan_HG_Info(zz, hg);
if (err != ZOLTAN_OK && err != ZOLTAN_WARN)
goto End;
}
}
if (hgp->output_level >= PHG_DEBUG_PLOT)
Zoltan_PHG_Plot(zz->Proc, hg->nVtx, p, hg->vindex, hg->vedge, NULL,
"coarsening plot");
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer_vcycle, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer_match, hgc->Communicator);
}
if (vcycle_timing) {
if (vcycle->timer_match < 0) {
char str[80];
sprintf(str, "VC Matching %d", hg->info);
vcycle->timer_match = Zoltan_Timer_Init(vcycle->timer, 0, str);
}
ZOLTAN_TIMER_START(vcycle->timer, vcycle->timer_match,
hgc->Communicator);
}
/* Allocate and initialize Matching Array */
if (hg->nVtx && !(match = (int*) ZOLTAN_MALLOC (hg->nVtx*sizeof(int)))) {
ZOLTAN_PRINT_ERROR(zz->Proc, yo, "Insufficient memory: Matching array");
return ZOLTAN_MEMERR;
}
for (i = 0; i < hg->nVtx; i++)
match[i] = i;
/* Calculate matching (packing or grouping) */
err = Zoltan_PHG_Matching (zz, hg, match, hgp);
if (err != ZOLTAN_OK && err != ZOLTAN_WARN) {
ZOLTAN_FREE ((void**) &match);
goto End;
}
if (vcycle_timing)
ZOLTAN_TIMER_STOP(vcycle->timer, vcycle->timer_match,
hgc->Communicator);
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer_match, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer_coarse, hgc->Communicator);
}
if (vcycle_timing) {
if (vcycle->timer_coarse < 0) {
char str[80];
sprintf(str, "VC Coarsening %d", hg->info);
vcycle->timer_coarse = Zoltan_Timer_Init(vcycle->timer, 0, str);
}
ZOLTAN_TIMER_START(vcycle->timer, vcycle->timer_coarse,
hgc->Communicator);
}
if (!(coarser = newVCycle(zz, NULL, NULL, vcycle, vcycle_timing))) {
ZOLTAN_FREE ((void**) &match);
ZOLTAN_PRINT_ERROR (zz->Proc, yo, "coarser is NULL.");
goto End;
}
/* Construct coarse hypergraph and LevelMap */
err = Zoltan_PHG_Coarsening (zz, hg, match, coarser->hg, vcycle->LevelMap,
&vcycle->LevelCnt, &vcycle->LevelSndCnt, &vcycle->LevelData,
&vcycle->comm_plan, hgp);
if (err != ZOLTAN_OK && err != ZOLTAN_WARN)
goto End;
if (vcycle_timing)
ZOLTAN_TIMER_STOP(vcycle->timer, vcycle->timer_coarse,
hgc->Communicator);
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer_coarse, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer_vcycle, hgc->Communicator);
}
ZOLTAN_FREE ((void**) &match);
if ((err=allocVCycle(coarser))!= ZOLTAN_OK)
goto End;
vcycle = coarser;
hg = vcycle->hg;
}
if (hgp->output_level >= PHG_DEBUG_LIST) {
uprintf(hgc, "START %3d |V|=%6d |E|=%6d #pins=%6d %d/%s/%s/%s p=%d...\n",
hg->info, hg->nVtx, hg->nEdge, hg->nPins, hg->redl,
hgp->redm_str, hgp->coarsepartition_str, hgp->refinement_str, p);
if (hgp->output_level > PHG_DEBUG_LIST) {
err = Zoltan_HG_Info(zz, hg);
if (err != ZOLTAN_OK && err != ZOLTAN_WARN)
goto End;
}
}
if (hgp->output_level >= PHG_DEBUG_PLOT)
Zoltan_PHG_Plot(zz->Proc, hg->nVtx, p, hg->vindex, hg->vedge, NULL,
"coarsening plot");
/* free array that may have been allocated in matching */
if (hgp->vtx_scal) ZOLTAN_FREE(&(hgp->vtx_scal));
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer_vcycle, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer_coarsepart, hgc->Communicator);
}
/****** Coarse Partitioning ******/
err = Zoltan_PHG_CoarsePartition (zz, hg, p, part_sizes, vcycle->Part, hgp);
if (err != ZOLTAN_OK && err != ZOLTAN_WARN)
goto End;
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer_coarsepart, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer_vcycle, hgc->Communicator);
}
del = vcycle;
/****** Uncoarsening/Refinement ******/
while (vcycle) {
VCycle *finer = vcycle->finer;
hg = vcycle->hg;
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer_vcycle, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer_refine, hgc->Communicator);
}
if (vcycle_timing) {
if (vcycle->timer_refine < 0) {
char str[80];
sprintf(str, "VC Refinement %d", hg->info);
vcycle->timer_refine = Zoltan_Timer_Init(vcycle->timer, 0, str);
}
ZOLTAN_TIMER_START(vcycle->timer, vcycle->timer_refine,
hgc->Communicator);
}
err = Zoltan_PHG_Refinement (zz, hg, p, part_sizes, vcycle->Part, hgp);
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer_refine, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer_vcycle, hgc->Communicator);
}
if (vcycle_timing)
ZOLTAN_TIMER_STOP(vcycle->timer, vcycle->timer_refine,
hgc->Communicator);
if (hgp->output_level >= PHG_DEBUG_LIST)
uprintf(hgc,
"FINAL %3d |V|=%6d |E|=%6d #pins=%6d %d/%s/%s/%s p=%d bal=%.2f cutl=%.2f\n",
hg->info, hg->nVtx, hg->nEdge, hg->nPins, hg->redl,
hgp->redm_str,
hgp->coarsepartition_str, hgp->refinement_str, p,
Zoltan_PHG_Compute_Balance(zz, hg, part_sizes, p, vcycle->Part),
Zoltan_PHG_Compute_ConCut(hgc, hg, vcycle->Part, p, &err));
if (hgp->output_level >= PHG_DEBUG_PLOT)
Zoltan_PHG_Plot(zz->Proc, hg->nVtx, p, hg->vindex, hg->vedge, vcycle->Part,
"partitioned plot");
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer_vcycle, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer_project, hgc->Communicator);
}
if (vcycle_timing) {
if (vcycle->timer_project < 0) {
char str[80];
sprintf(str, "VC Project Up %d", hg->info);
vcycle->timer_project = Zoltan_Timer_Init(vcycle->timer, 0, str);
}
ZOLTAN_TIMER_START(vcycle->timer, vcycle->timer_project,
hgc->Communicator);
}
/* Project coarse partition to fine partition */
if (finer) {
int *rbuffer;
/* easy to undo internal matches */
for (i = 0; i < finer->hg->nVtx; i++)
if (finer->LevelMap[i] >= 0)
finer->Part[i] = vcycle->Part[finer->LevelMap[i]];
/* fill sendbuffer with part data for external matches I owned */
for (i = 0; i < finer->LevelCnt; i++) {
++i; /* skip return lno */
finer->LevelData[i] = finer->Part[finer->LevelData[i]];
}
/* allocate rec buffer */
rbuffer = NULL;
if (finer->LevelSndCnt > 0) {
rbuffer = (int*) ZOLTAN_MALLOC (2 * finer->LevelSndCnt * sizeof(int));
if (!rbuffer) {
ZOLTAN_PRINT_ERROR (zz->Proc, yo, "Insufficient memory.");
return ZOLTAN_MEMERR;
}
}
/* get partition assignments from owners of externally matchted vtxs */
Zoltan_Comm_Resize (finer->comm_plan, NULL, COMM_TAG, &i);
Zoltan_Comm_Do_Reverse (finer->comm_plan, COMM_TAG+1,
(char*) finer->LevelData, 2 * sizeof(int), NULL, (char*) rbuffer);
/* process data to undo external matches */
for (i = 0; i < 2 * finer->LevelSndCnt;) {
int lno, partition;
lno = rbuffer[i++];
partition = rbuffer[i++];
finer->Part[lno] = partition;
}
ZOLTAN_FREE (&rbuffer);
Zoltan_Comm_Destroy (&finer->comm_plan);
}
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer_project, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer_vcycle, hgc->Communicator);
}
if (vcycle_timing)
ZOLTAN_TIMER_STOP(vcycle->timer, vcycle->timer_project,
hgc->Communicator);
vcycle = finer;
} /* while (vcycle) */
End:
vcycle = del;
while (vcycle) {
if (vcycle_timing) {
Zoltan_Timer_PrintAll(vcycle->timer, 0, hgc->Communicator, stdout);
Zoltan_Timer_Destroy(&vcycle->timer);
}
if (vcycle->finer) { /* cleanup by level */
Zoltan_HG_HGraph_Free (vcycle->hg);
Zoltan_Multifree (__FILE__, __LINE__, 4, &vcycle->Part, &vcycle->LevelMap,
&vcycle->LevelData, &vcycle->hg);
}
else /* cleanup top level */
Zoltan_Multifree (__FILE__, __LINE__, 2, &vcycle->LevelMap,
&vcycle->LevelData);
del = vcycle;
vcycle = vcycle->finer;
ZOLTAN_FREE(&del);
}
if (do_timing)
ZOLTAN_TIMER_STOP(zz->ZTime, timer_vcycle, hgc->Communicator);
ZOLTAN_TRACE_EXIT(zz, yo) ;
return err;
}
/* Main partitioning function for hypergraph partitioning. */
int Zoltan_PHG_Partition (
ZZ *zz, /* Zoltan data structure */
HGraph *hg, /* Input hypergraph to be partitioned */
int p, /* Input: number partitions to be generated */
float *part_sizes, /* Input: array of length p containing percentages
of work to be assigned to each partition */
Partition parts, /* Input: initial partition #s; aligned with vtx
arrays.
Output: computed partition #s */
PHGPartParams *hgp) /* Input: parameters for hgraph partitioning. */
{
PHGComm *hgc = hg->comm;
VCycle *vcycle=NULL, *del=NULL;
int i, err = ZOLTAN_OK, middle;
ZOLTAN_GNO_TYPE origVpincnt; /* for processor reduction test */
ZOLTAN_GNO_TYPE prevVcnt = 2*hg->dist_x[hgc->nProc_x]; /* initialized so that the */
ZOLTAN_GNO_TYPE prevVedgecnt = 2*hg->dist_y[hgc->nProc_y]; /* while loop will be entered
before any coarsening */
ZOLTAN_GNO_TYPE tot_nPins, local_nPins;
MPI_Datatype zoltan_gno_mpi_type;
char *yo = "Zoltan_PHG_Partition";
int do_timing = (hgp->use_timers > 1);
int fine_timing = (hgp->use_timers > 2);
int vcycle_timing = (hgp->use_timers > 4 && hgp->ProRedL == 0);
short refine = 0;
struct phg_timer_indices *timer = Zoltan_PHG_LB_Data_timers(zz);
int reset_geometric_matching = 0;
char reset_geometric_string[4];
ZOLTAN_TRACE_ENTER(zz, yo);
zoltan_gno_mpi_type = Zoltan_mpi_gno_type();
if (do_timing) {
if (timer->vcycle < 0)
timer->vcycle = Zoltan_Timer_Init(zz->ZTime, 0, "Vcycle");
if (timer->procred < 0)
timer->procred = Zoltan_Timer_Init(zz->ZTime, 0, "Processor Reduction");
if (timer->match < 0)
timer->match = Zoltan_Timer_Init(zz->ZTime, 1, "Matching");
if (timer->coarse < 0)
timer->coarse = Zoltan_Timer_Init(zz->ZTime, 1, "Coarsening");
if (timer->coarsepart < 0)
timer->coarsepart = Zoltan_Timer_Init(zz->ZTime, 1,
"Coarse_Partition");
if (timer->refine < 0)
timer->refine = Zoltan_Timer_Init(zz->ZTime, 1, "Refinement");
if (timer->project < 0)
timer->project = Zoltan_Timer_Init(zz->ZTime, 1, "Project_Up");
ZOLTAN_TIMER_START(zz->ZTime, timer->vcycle, hgc->Communicator);
}
local_nPins = (ZOLTAN_GNO_TYPE)hg->nPins;
MPI_Allreduce(&local_nPins,&tot_nPins,1,zoltan_gno_mpi_type,MPI_SUM,hgc->Communicator);
origVpincnt = tot_nPins;
if (!(vcycle = newVCycle(zz, hg, parts, NULL, vcycle_timing))) {
ZOLTAN_PRINT_ERROR (zz->Proc, yo, "VCycle is NULL.");
ZOLTAN_TRACE_EXIT(zz, yo);
return ZOLTAN_MEMERR;
}
/* For geometric coarsening, hgp->matching pointer and string are reset
* after geometric_levels of coarsening. Will need to reset them after
* this vcycle is completed. Capture that fact now! */
if (!strcasecmp(hgp->redm_str, "rcb") || !strcasecmp(hgp->redm_str, "rib")) {
reset_geometric_matching = 1;
strcpy(reset_geometric_string, hgp->redm_str);
}
/****** Coarsening ******/
#define COARSEN_FRACTION_LIMIT 0.9 /* Stop if we don't make much progress */
while ((hg->redl>0) && (hg->dist_x[hgc->nProc_x] > (ZOLTAN_GNO_TYPE)hg->redl)
&& ((hg->dist_x[hgc->nProc_x] < (ZOLTAN_GNO_TYPE) (COARSEN_FRACTION_LIMIT * prevVcnt + 0.5)) /* prevVcnt initialized to 2*hg->dist_x[hgc->nProc_x] */
|| (hg->dist_y[hgc->nProc_y] < (ZOLTAN_GNO_TYPE) (COARSEN_FRACTION_LIMIT * prevVedgecnt + 0.5))) /* prevVedgecnt initialized to 2*hg->dist_y[hgc->nProc_y] */
&& hg->dist_y[hgc->nProc_y] && hgp->matching) {
ZOLTAN_GNO_TYPE *match = NULL;
VCycle *coarser=NULL, *redistributed=NULL;
prevVcnt = hg->dist_x[hgc->nProc_x];
prevVedgecnt = hg->dist_y[hgc->nProc_y];
#ifdef _DEBUG
/* UVC: load balance stats */
Zoltan_PHG_LoadBalStat(zz, hg);
#endif
if (hgp->output_level >= PHG_DEBUG_LIST) {
uprintf(hgc,
"START %3d |V|=%6d |E|=%6d #pins=%6d %d/%s/%s/%s p=%d...\n",
hg->info, hg->nVtx, hg->nEdge, hg->nPins, hg->redl,
hgp->redm_str,
hgp->coarsepartition_str, hgp->refinement_str, p);
if (hgp->output_level > PHG_DEBUG_LIST) {
err = Zoltan_HG_Info(zz, hg);
if (err != ZOLTAN_OK && err != ZOLTAN_WARN)
goto End;
}
}
if (hgp->output_level >= PHG_DEBUG_PLOT)
Zoltan_PHG_Plot(zz->Proc, hg->nVtx, p, hg->vindex, hg->vedge, NULL,
"coarsening plot");
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer->vcycle, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer->match, hgc->Communicator);
}
if (vcycle_timing) {
if (vcycle->timer_match < 0) {
char str[80];
sprintf(str, "VC Matching %d", hg->info);
vcycle->timer_match = Zoltan_Timer_Init(vcycle->timer, 0, str);
}
ZOLTAN_TIMER_START(vcycle->timer, vcycle->timer_match,
hgc->Communicator);
}
/* Allocate and initialize Matching Array */
if (hg->nVtx && !(match = (ZOLTAN_GNO_TYPE *) ZOLTAN_MALLOC (hg->nVtx*sizeof(ZOLTAN_GNO_TYPE)))) {
ZOLTAN_PRINT_ERROR(zz->Proc, yo, "Insufficient memory: Matching array");
ZOLTAN_TRACE_EXIT(zz, yo);
return ZOLTAN_MEMERR;
}
for (i = 0; i < hg->nVtx; i++)
match[i] = i;
/* Calculate matching (packing or grouping) */
err = Zoltan_PHG_Matching (zz, hg, match, hgp);
if (err != ZOLTAN_OK && err != ZOLTAN_WARN) {
ZOLTAN_FREE (&match);
goto End;
}
if (vcycle_timing)
ZOLTAN_TIMER_STOP(vcycle->timer, vcycle->timer_match,
hgc->Communicator);
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer->match, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer->coarse, hgc->Communicator);
}
if (vcycle_timing) {
if (vcycle->timer_coarse < 0) {
char str[80];
sprintf(str, "VC Coarsening %d", hg->info);
vcycle->timer_coarse = Zoltan_Timer_Init(vcycle->timer, 0, str);
}
ZOLTAN_TIMER_START(vcycle->timer, vcycle->timer_coarse,
hgc->Communicator);
}
if (!(coarser = newVCycle(zz, NULL, NULL, vcycle, vcycle_timing))) {
ZOLTAN_FREE (&match);
ZOLTAN_PRINT_ERROR (zz->Proc, yo, "coarser is NULL.");
goto End;
}
/* Construct coarse hypergraph and LevelMap */
err = Zoltan_PHG_Coarsening (zz, hg, match, coarser->hg, vcycle->LevelMap,
&vcycle->LevelCnt, &vcycle->LevelSndCnt, &vcycle->LevelData,
&vcycle->comm_plan, hgp);
if (err != ZOLTAN_OK && err != ZOLTAN_WARN)
goto End;
if (vcycle_timing)
ZOLTAN_TIMER_STOP(vcycle->timer, vcycle->timer_coarse,
hgc->Communicator);
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer->coarse, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer->vcycle, hgc->Communicator);
}
ZOLTAN_FREE (&match);
if ((err=allocVCycle(coarser))!= ZOLTAN_OK)
goto End;
vcycle = coarser;
hg = vcycle->hg;
if (hgc->nProc > 1 && hgp->ProRedL > 0) {
local_nPins = (ZOLTAN_GNO_TYPE)hg->nPins;
MPI_Allreduce(&local_nPins, &tot_nPins, 1, zoltan_gno_mpi_type, MPI_SUM,
hgc->Communicator);
if (tot_nPins < (ZOLTAN_GNO_TYPE)(hgp->ProRedL * origVpincnt + 0.5)) {
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer->vcycle, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer->procred, hgc->Communicator);
}
/* redistribute to half the processors */
origVpincnt = tot_nPins; /* update for processor reduction test */
if(hg->nVtx&&!(hg->vmap=(int*)ZOLTAN_MALLOC(hg->nVtx*sizeof(int)))) {
ZOLTAN_PRINT_ERROR(zz->Proc, yo, "Insufficient memory: hg->vmap");
ZOLTAN_TRACE_EXIT(zz, yo);
return ZOLTAN_MEMERR;
}
for (i = 0; i < hg->nVtx; i++)
hg->vmap[i] = i;
middle = (int)((float) (hgc->nProc-1) * hgp->ProRedL);
if (hgp->nProc_x_req!=1&&hgp->nProc_y_req!=1) { /* Want 2D decomp */
if ((middle+1) > SMALL_PRIME && Zoltan_PHG_isPrime(middle+1))
--middle; /* if it was prime just use one less #procs (since
it should be bigger than SMALL_PRIME it is safe to
decrement) */
}
if (!(hgc = (PHGComm*) ZOLTAN_MALLOC (sizeof(PHGComm)))) {
ZOLTAN_PRINT_ERROR(zz->Proc, yo, "Insufficient memory: PHGComm");
ZOLTAN_TRACE_EXIT(zz, yo);
return ZOLTAN_MEMERR;
}
if (!(redistributed=newVCycle(zz,NULL,NULL,vcycle,vcycle_timing))) {
ZOLTAN_FREE (&hgc);
ZOLTAN_PRINT_ERROR (zz->Proc, yo, "redistributed is NULL.");
goto End;
}
Zoltan_PHG_Redistribute(zz,hgp,hg,0,middle,hgc, redistributed->hg,
&vcycle->vlno,&vcycle->vdest);
if (hgp->UseFixedVtx || hgp->UsePrefPart)
redistributed->hg->bisec_split = hg->bisec_split;
if ((err=allocVCycle(redistributed))!= ZOLTAN_OK)
goto End;
vcycle = redistributed;
if (hgc->myProc < 0)
/* I'm not in the redistributed part so I should go to uncoarsening
refinement and wait */ {
if (fine_timing) {
if (timer->cpgather < 0)
timer->cpgather = Zoltan_Timer_Init(zz->ZTime, 1, "CP Gather");
if (timer->cprefine < 0)
timer->cprefine =Zoltan_Timer_Init(zz->ZTime, 0, "CP Refine");
if (timer->cpart < 0)
timer->cpart = Zoltan_Timer_Init(zz->ZTime, 0, "CP Part");
}
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer->procred, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer->vcycle, hgc->Communicator);
}
goto Refine;
}
hg = vcycle->hg;
hg->redl = hgp->redl; /* not set with hg creation */
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer->procred, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer->vcycle, hgc->Communicator);
}
}
}
}
if (hgp->output_level >= PHG_DEBUG_LIST) {
uprintf(hgc, "START %3d |V|=%6d |E|=%6d #pins=%6d %d/%s/%s/%s p=%d...\n",
hg->info, hg->nVtx, hg->nEdge, hg->nPins, hg->redl,
hgp->redm_str, hgp->coarsepartition_str, hgp->refinement_str, p);
if (hgp->output_level > PHG_DEBUG_LIST) {
err = Zoltan_HG_Info(zz, hg);
if (err != ZOLTAN_OK && err != ZOLTAN_WARN)
goto End;
}
}
if (hgp->output_level >= PHG_DEBUG_PLOT)
Zoltan_PHG_Plot(zz->Proc, hg->nVtx, p, hg->vindex, hg->vedge, NULL,
"coarsening plot");
/* free array that may have been allocated in matching */
if (hgp->vtx_scal) {
hgp->vtx_scal_size = 0;
ZOLTAN_FREE(&(hgp->vtx_scal));
}
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer->vcycle, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer->coarsepart, hgc->Communicator);
}
/****** Coarse Partitioning ******/
err = Zoltan_PHG_CoarsePartition (zz, hg, p, part_sizes, vcycle->Part, hgp);
if (err != ZOLTAN_OK && err != ZOLTAN_WARN)
goto End;
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer->coarsepart, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer->vcycle, hgc->Communicator);
}
Refine:
del = vcycle;
refine = 1;
/****** Uncoarsening/Refinement ******/
while (vcycle) {
VCycle *finer = vcycle->finer;
hg = vcycle->hg;
if (refine && hgc->myProc >= 0) {
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer->vcycle, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer->refine, hgc->Communicator);
}
if (vcycle_timing) {
if (vcycle->timer_refine < 0) {
char str[80];
sprintf(str, "VC Refinement %d", hg->info);
vcycle->timer_refine = Zoltan_Timer_Init(vcycle->timer, 0, str);
}
ZOLTAN_TIMER_START(vcycle->timer, vcycle->timer_refine,
hgc->Communicator);
}
err = Zoltan_PHG_Refinement (zz, hg, p, part_sizes, vcycle->Part, hgp);
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer->refine, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer->vcycle, hgc->Communicator);
}
if (vcycle_timing)
ZOLTAN_TIMER_STOP(vcycle->timer, vcycle->timer_refine,
hgc->Communicator);
if (hgp->output_level >= PHG_DEBUG_LIST)
uprintf(hgc,
"FINAL %3d |V|=%6d |E|=%6d #pins=%6d %d/%s/%s/%s p=%d bal=%.2f cutl=%.2f\n",
hg->info, hg->nVtx, hg->nEdge, hg->nPins, hg->redl,
hgp->redm_str,
hgp->coarsepartition_str, hgp->refinement_str, p,
Zoltan_PHG_Compute_Balance(zz, hg, part_sizes, 0, p,
vcycle->Part),
Zoltan_PHG_Compute_ConCut(hgc, hg, vcycle->Part, p, &err));
if (hgp->output_level >= PHG_DEBUG_PLOT)
Zoltan_PHG_Plot(zz->Proc, hg->nVtx, p, hg->vindex, hg->vedge, vcycle->Part,
"partitioned plot");
}
if (finer) {
int *rbuffer;
/* Project coarse partition to fine partition */
if (finer->comm_plan) {
refine = 1;
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer->vcycle, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer->project, hgc->Communicator);
}
if (vcycle_timing) {
if (vcycle->timer_project < 0) {
char str[80];
sprintf(str, "VC Project Up %d", hg->info);
vcycle->timer_project = Zoltan_Timer_Init(vcycle->timer, 0, str);
}
ZOLTAN_TIMER_START(vcycle->timer, vcycle->timer_project,
hgc->Communicator);
}
/* easy to assign partitions to internal matches */
for (i = 0; i < finer->hg->nVtx; i++)
if (finer->LevelMap[i] >= 0) /* if considers only the local vertices */
finer->Part[i] = vcycle->Part[finer->LevelMap[i]];
/* now that the course partition assignments have been propagated */
/* upward to the finer level for the local vertices, we need to */
/* fill the LevelData (matched pairs of a local vertex with a */
/* off processor vertex) with the partition assignment of the */
/* local vertex - can be done totally in the finer level! */
for (i = 0; i < finer->LevelCnt; i++) {
++i; /* skip over off processor lno */
finer->LevelData[i] = finer->Part[finer->LevelData[i]];
}
/* allocate rec buffer to exchange LevelData information */
rbuffer = NULL;
if (finer->LevelSndCnt > 0) {
rbuffer = (int*) ZOLTAN_MALLOC (2 * finer->LevelSndCnt * sizeof(int));
if (!rbuffer) {
ZOLTAN_PRINT_ERROR (zz->Proc, yo, "Insufficient memory.");
ZOLTAN_TRACE_EXIT(zz, yo);
return ZOLTAN_MEMERR;
}
}
/* get partition assignments from owners of externally matched vtxs */
Zoltan_Comm_Resize (finer->comm_plan, NULL, COMM_TAG, &i);
Zoltan_Comm_Do_Reverse (finer->comm_plan, COMM_TAG+1,
(char*) finer->LevelData, 2 * sizeof(int), NULL, (char*) rbuffer);
/* process data to assign partitions to expernal matches */
for (i = 0; i < 2 * finer->LevelSndCnt;) {
int lno, partition;
lno = rbuffer[i++];
partition = rbuffer[i++];
finer->Part[lno] = partition;
}
ZOLTAN_FREE (&rbuffer);
Zoltan_Comm_Destroy (&finer->comm_plan);
if (do_timing) {
ZOLTAN_TIMER_STOP(zz->ZTime, timer->project, hgc->Communicator);
ZOLTAN_TIMER_START(zz->ZTime, timer->vcycle, hgc->Communicator);
}
if (vcycle_timing)
ZOLTAN_TIMER_STOP(vcycle->timer, vcycle->timer_project,
hgc->Communicator);
} else {
int *sendbuf = NULL, size;
refine = 0;
/* ints local and partition numbers */
if (finer->vlno) {
sendbuf = (int*) ZOLTAN_MALLOC (2 * hg->nVtx * sizeof(int));
if (!sendbuf) {
ZOLTAN_PRINT_ERROR (zz->Proc, yo, "Insufficient memory.");
ZOLTAN_TRACE_EXIT(zz, yo);
return ZOLTAN_MEMERR;
}
for (i = 0; i < hg->nVtx; ++i) {
sendbuf[2 * i] = finer->vlno[i]; /* assign local numbers */
sendbuf[2 * i + 1] = vcycle->Part[i];/* assign partition numbers */
}
}
ZOLTAN_FREE (&hgc);
hgc = finer->hg->comm; /* updating hgc is required when the processors
change */
/* Create comm plan to unredistributed processors */
err = Zoltan_Comm_Create(&finer->comm_plan, finer->vlno ? hg->nVtx : 0,
finer->vdest, hgc->Communicator, COMM_TAG+2,
&size);
if (err != ZOLTAN_OK && err != ZOLTAN_WARN) {
ZOLTAN_PRINT_ERROR(hgc->myProc, yo, "Zoltan_Comm_Create failed.");
goto End;
}
/* allocate rec buffer to exchange sendbuf information */
rbuffer = NULL;
if (finer->hg->nVtx) {
rbuffer = (int*) ZOLTAN_MALLOC (2 * finer->hg->nVtx * sizeof(int));
if (!rbuffer) {
ZOLTAN_PRINT_ERROR(zz->Proc, yo, "Insufficient memory.");
ZOLTAN_TRACE_EXIT(zz, yo);
return ZOLTAN_MEMERR;
}
}
/* Use plan to send partitions to the unredistributed processors */
Zoltan_Comm_Do(finer->comm_plan, COMM_TAG+3, (char *) sendbuf,
2*sizeof(int), (char *) rbuffer);
MPI_Bcast(rbuffer, 2*finer->hg->nVtx, MPI_INT, 0, hgc->col_comm);
/* process data to assign partitions to unredistributed processors */
for (i = 0; i < 2 * finer->hg->nVtx;) {
int lno, partition;
lno = rbuffer[i++];
partition = rbuffer[i++];
finer->Part[lno] = partition;
}
if (finer->vlno)
ZOLTAN_FREE (&sendbuf);
ZOLTAN_FREE (&rbuffer);
Zoltan_Comm_Destroy (&finer->comm_plan);
}
}
vcycle = finer;
} /* while (vcycle) */
End:
vcycle = del;
while (vcycle) {
if (vcycle_timing) {
Zoltan_Timer_PrintAll(vcycle->timer, 0, hgc->Communicator, stdout);
Zoltan_Timer_Destroy(&vcycle->timer);
}
if (vcycle->finer) { /* cleanup by level */
Zoltan_HG_HGraph_Free (vcycle->hg);
if (vcycle->LevelData)
Zoltan_Multifree (__FILE__, __LINE__, 4, &vcycle->Part,
&vcycle->LevelMap, &vcycle->LevelData, &vcycle->hg);
else if (vcycle->vlno)
Zoltan_Multifree (__FILE__, __LINE__, 5, &vcycle->Part, &vcycle->vdest,
&vcycle->vlno, &vcycle->LevelMap, &vcycle->hg);
else
Zoltan_Multifree (__FILE__, __LINE__, 3, &vcycle->Part,
&vcycle->LevelMap, &vcycle->hg);
}
else /* cleanup top level */
Zoltan_Multifree (__FILE__, __LINE__, 2, &vcycle->LevelMap,
&vcycle->LevelData);
del = vcycle;
vcycle = vcycle->finer;
ZOLTAN_FREE(&del);
}
if (reset_geometric_matching) {
strcpy(hgp->redm_str, reset_geometric_string);
Zoltan_PHG_Set_Matching_Fn(hgp);
}
if (do_timing)
ZOLTAN_TIMER_STOP(zz->ZTime, timer->vcycle, hgc->Communicator);
ZOLTAN_TRACE_EXIT(zz, yo) ;
return err;
}