void xmp_gather_(_XMP_array_t **x_d, _XMP_array_t **a_d, ... ) { int i; va_list valst; _XMP_array_t *idx_p; _XMP_array_t **idx_pp; _XMP_array_t **idx_array; // _XMP_array_t *x_p = *(_XMP_array_t **)x_d; _XMP_array_t *a_p = *(_XMP_array_t **)a_d; idx_array = (_XMP_array_t **)_XMP_alloc(sizeof(_XMP_array_t *)*a_p->dim); va_start( valst, a_d ); for(i=0;i<a_p->dim;i++){ idx_pp = va_arg( valst , _XMP_array_t** ); idx_p = *(_XMP_array_t **)idx_pp; idx_array[i] = idx_p; } va_end(valst); xmpf_gather(*x_d, *a_d, idx_array); _XMP_free(idx_array); }
void _XMP_reduce_gpu_CLAUSE(void *dev_addr, int count, int datatype, int op) { // setup information MPI_Datatype mpi_datatype = MPI_DATATYPE_NULL; size_t datatype_size = 0; MPI_Op mpi_op; _XMP_setup_reduce_type(&mpi_datatype, &datatype_size, datatype); _XMP_setup_reduce_op(&mpi_op, op); size_t size = datatype_size * count; void *host_buf = _XMP_alloc(size); cudaError_t e; // copy dev to host e = cudaMemcpy(host_buf, dev_addr, size, cudaMemcpyDeviceToHost); cudaErrorCheck(e); // reduce MPI_Allreduce(MPI_IN_PLACE, host_buf, count, mpi_datatype, mpi_op, *((MPI_Comm *)(_XMP_get_execution_nodes())->comm)); // copy host to dev e = cudaMemcpy(dev_addr, host_buf, size, cudaMemcpyHostToDevice); cudaErrorCheck(e); _XMP_free(host_buf); }
static void _mpi_scalar_mput(const int target_rank, const _XMP_coarray_t *dst_desc, const void *src, const size_t dst_offset, const size_t src_offset, const int dst_dims, const _XMP_array_section_t *dst_info, const bool is_dst_on_acc) { int allelmt_dim = _XMP_get_dim_of_allelmts(dst_dims, dst_info); size_t element_size = dst_desc->elmt_size; size_t allelmt_size = (allelmt_dim == dst_dims)? element_size : dst_info[allelmt_dim].distance * dst_info[allelmt_dim].elmts; char *laddr = (allelmt_dim == dst_dims)? ((char*)src + src_offset) : _XMP_alloc(allelmt_size); char *raddr = get_remote_addr(dst_desc, target_rank, is_dst_on_acc) + dst_offset; MPI_Win win = get_window(dst_desc, is_dst_on_acc); XACC_DEBUG("scalar_mput(src_p=%p, size=%zd, target=%d, dst_p=%p, is_acc=%d)", laddr, element_size, target_rank, raddr, is_dst_on_acc); XACC_DEBUG("allelmt_dim=%d, dst_dims=%d", allelmt_dim, dst_dims); if(allelmt_dim != dst_dims){ //mcopy _XMP_array_section_t info; info.start = 0; info.length = allelmt_size/element_size; info.stride = 1; info.elmts = info.length; info.distance = element_size; _XMP_stride_memcpy_1dim(laddr, (char*)src+src_offset, &info, element_size, _XMP_SCALAR_MCOPY); XACC_DEBUG("mcopy(%lld, %lld, %lld), %lld",info.start, info.length, info.stride, info.elmts); } long long idxs[allelmt_dim+1]; for(int i = 0; i < allelmt_dim+1; i++) idxs[i]=0; while(1){ size_t offset = 0; for(int i = 0; i < allelmt_dim; i++){ offset += dst_info[i].distance * idxs[i+1] * dst_info[i].stride; } MPI_Put((void*)laddr, allelmt_size, MPI_BYTE, target_rank, (MPI_Aint)(raddr+offset), allelmt_size, MPI_BYTE, win); ++idxs[allelmt_dim]; for(int i = allelmt_dim-1; i >= 0; i--){ long long length = dst_info[i].length; if(idxs[i+1] >= length){ idxs[i+1] -= length; ++idxs[i]; }else{ break; } } if(idxs[0] > 0){ break; } } _wait_puts(target_rank, win); if(allelmt_dim != dst_dims){ _XMP_free(laddr); } }
void _XMP_reduce_gpu_NODES_ENTIRE(_XMP_nodes_t *nodes, void *dev_addr, int count, int datatype, int op) { if (count == 0) { return; // FIXME not good implementation } if (!nodes->is_member) { return; } // setup information MPI_Datatype mpi_datatype = MPI_DATATYPE_NULL; size_t datatype_size = 0; MPI_Op mpi_op; _XMP_setup_reduce_type(&mpi_datatype, &datatype_size, datatype); _XMP_setup_reduce_op(&mpi_op, op); size_t size = datatype_size * count; void *host_buf = _XMP_alloc(size); cudaError_t e; // copy dev to host e = cudaMemcpy(host_buf, dev_addr, size, cudaMemcpyDeviceToHost); cudaErrorCheck(e); MPI_Allreduce(MPI_IN_PLACE, host_buf, count, mpi_datatype, mpi_op, *((MPI_Comm *)nodes->comm)); // copy host to dev e = cudaMemcpy(dev_addr, host_buf, size, cudaMemcpyHostToDevice); cudaErrorCheck(e); _XMP_free(host_buf); }
/** Destroy shift queue */ void _XMP_mpi_destroy_shift_queue(bool is_acc) { struct _shift_queue_t *shift_queue = is_acc? &_shift_queue_acc : &_shift_queue; _XMP_free(shift_queue->shifts); shift_queue->shifts = NULL; }
void _XMP_tca_comm_finalize() { for(int i = 0; i < _XMP_world_size; i++){ if(i == _XMP_world_rank) continue; _XMP_tca_ring_buf_finalize(&_ring_bufs[i]); } _XMP_free(_ring_bufs); //fprintf(stderr, "spin_wait_count=%llu\n", spin_wait_count); }
void _XMP_mpi_coarray_detach(_XMP_coarray_t *coarray_desc, const bool is_acc) { if(_XMP_flag_multi_win){ MPI_Win win = is_acc? coarray_desc->win_acc : coarray_desc->win; MPI_Win_unlock_all(win); _XMP_barrier_EXEC(); _XMP_mpi_onesided_destroy_win(&win); }else{ MPI_Win win = _xmp_mpi_distarray_win; void *real_addr = coarray_desc->real_addr; #ifdef _XMP_XACC if(is_acc){ win = _xmp_mpi_distarray_win_acc; real_addr = coarray_desc->real_addr_dev; } #endif MPI_Win_detach(win, real_addr); } if(is_acc){ #ifdef _XMP_XACC _XMP_free(coarray_desc->addr_dev); //FIXME may be wrong coarray_desc->addr_dev = NULL; coarray_desc->real_addr_dev = NULL; coarray_desc->win_acc = MPI_WIN_NULL; coarray_desc->nodes = NULL; #endif }else{ _XMP_free(coarray_desc->addr); coarray_desc->addr = NULL; coarray_desc->real_addr = NULL; coarray_desc->win = MPI_WIN_NULL; coarray_desc->nodes = NULL; } }
void _XMP_reflect_async__(_XMP_array_t *a, int async_id) { if (!a->is_allocated){ _xmp_set_reflect_flag = 0; return; } if (!_xmp_set_reflect_flag){ for (int i = 0; i < a->dim; i++){ _XMP_array_info_t *ai = &(a->info[i]); _xmp_lwidth[i] = ai->shadow_size_lo; _xmp_uwidth[i] = ai->shadow_size_hi; _xmp_is_periodic[i] = 0; } } _XMP_reflect_sched(a, _xmp_lwidth, _xmp_uwidth, _xmp_is_periodic, 1); _XMP_reflect_start(a, _xmp_lwidth, _xmp_uwidth, _xmp_is_periodic, async_id); _XMP_async_comm_t *async = _XMP_get_current_async(); _XMP_free(async->reqs); async->reqs = NULL; // reqs not needed in RDMA reflects. for (int i = 0; i < a->dim; i++){ _XMP_reflect_sched_t *reflect = a->info[i].reflect_sched; if (_xmp_lwidth[i] && reflect->hi_rank != -1) async->nreqs += reflect->count; if (_xmp_uwidth[i] && reflect->lo_rank != -1) async->nreqs += reflect->count; } _xmp_set_reflect_flag = 0; for (int i = 0; i < a->dim; i++){ _xmp_lwidth[i] = 0; _xmp_uwidth[i] = 0; _xmp_is_periodic[i] = 0; } }
void xmp_transpose_(_XMP_array_t **dst_d, _XMP_array_t **src_d, int *opt){ #if 1 xmpf_transpose(*dst_d, *src_d, *opt); return; #else _XMP_array_t *dst_array = *(_XMP_array_t **)dst_d; _XMP_array_t *src_array = *(_XMP_array_t **)src_d; int nnodes; int dst_block_dim, src_block_dim; void *sendbuf=NULL, *recvbuf=NULL; unsigned long long count, bufsize; int dst_chunk_size, dst_ser_size, type_size; int src_chunk_size, src_ser_size; nnodes = dst_array->align_template->onto_nodes->comm_size; // 2-dimensional Matrix if (dst_array->dim != 2) { _XMP_fatal("bad dimension for xmp_transpose"); } // No Shadow if (dst_array->info[0].shadow_size_lo != 0 || dst_array->info[0].shadow_size_hi != 0 || src_array->info[0].shadow_size_lo != 0 || src_array->info[0].shadow_size_hi != 0) { _XMP_fatal("A global array must not have shadows"); fflush(stdout); } // Dividable by the number of nodes if (dst_array->info[0].ser_size % nnodes != 0) { _XMP_fatal("Not dividable by the number of nodes"); fflush(stdout); } dst_block_dim = (dst_array->info[0].align_manner == _XMP_N_ALIGN_BLOCK) ? 0 : 1; src_block_dim = (src_array->info[0].align_manner == _XMP_N_ALIGN_BLOCK) ? 0 : 1; dst_chunk_size = dst_array->info[dst_block_dim].par_size; dst_ser_size = dst_array->info[dst_block_dim].ser_size; src_chunk_size = src_array->info[src_block_dim].par_size; src_ser_size = src_array->info[src_block_dim].ser_size; type_size = dst_array->type_size; count = dst_chunk_size * src_chunk_size; bufsize = count * nnodes * type_size; _XMP_check_reflect_type(); if (src_block_dim == 1){ if (*opt ==0){ sendbuf = _XMP_alloc(bufsize); }else if (*opt==1){ sendbuf = dst_array->array_addr_p; } // src_array -> sendbuf _XMP_pack_vector2((char *)sendbuf, (char *)src_array->array_addr_p , src_chunk_size, dst_chunk_size, nnodes, type_size, src_block_dim); } else { sendbuf = src_array->array_addr_p; } if (*opt == 0){ recvbuf = _XMP_alloc(bufsize); }else if (*opt ==1){ recvbuf = src_array->array_addr_p; } MPI_Alltoall(sendbuf, count * type_size, MPI_BYTE, recvbuf, count * type_size, MPI_BYTE, *((MPI_Comm *)src_array->align_template->onto_nodes->comm)); if (dst_block_dim == 1){ _XMPF_unpack_transpose_vector((char *)dst_array->array_addr_p , (char *)recvbuf , src_ser_size, dst_chunk_size, type_size, dst_block_dim); if (*opt==0){ _XMP_free(recvbuf); } } if (src_block_dim == 1){ if (*opt == 0){ _XMP_free(sendbuf); } } return; #endif }
void _XMP_reflect_pcopy_sched_dim(_XMP_array_t *adesc, int target_dim, int lwidth, int uwidth, int is_periodic, int shadow_comm_type){ if (lwidth == 0 && uwidth == 0) return; _XMP_array_info_t *ai = &(adesc->info[target_dim]); _XMP_array_info_t *ainfo = adesc->info; _XMP_ASSERT(ai->align_manner == _XMP_N_ALIGN_BLOCK); _XMP_ASSERT(ai->is_shadow_comm_member); if (lwidth > ai->shadow_size_lo || uwidth > ai->shadow_size_hi){ _XMP_fatal("reflect width is larger than shadow width."); } _XMP_reflect_sched_t *reflect = ai->reflect_sched; int target_tdim = ai->align_template_index; _XMP_nodes_info_t *ni = adesc->align_template->chunk[target_tdim].onto_nodes_info; if (ni->size == 1 && !is_periodic) return; int ndims = adesc->dim; // 0-origin int my_pos = ni->rank; int lb_pos = _XMP_get_owner_pos(adesc, target_dim, ai->ser_lower); int ub_pos = _XMP_get_owner_pos(adesc, target_dim, ai->ser_upper); int lo_pos = (my_pos == lb_pos) ? ub_pos : my_pos - 1; int hi_pos = (my_pos == ub_pos) ? lb_pos : my_pos + 1; MPI_Comm *comm = adesc->align_template->onto_nodes->comm; int my_rank = adesc->align_template->onto_nodes->comm_rank; int lo_rank = my_rank + (lo_pos - my_pos) * ni->multiplier; int hi_rank = my_rank + (hi_pos - my_pos) * ni->multiplier; int count = 0, blocklength = 0; long long stride = 0; int type_size = adesc->type_size; void *array_addr = adesc->array_addr_p; void *lo_send_array = NULL, *lo_recv_array = NULL; void *hi_send_array = NULL, *hi_recv_array = NULL; void *lo_send_buf = NULL; void *lo_recv_buf = NULL; void *hi_send_buf = NULL; void *hi_recv_buf = NULL; int lo_buf_size = 0; int hi_buf_size = 0; if (reflect->prev_pcopy_sched_type && lwidth == reflect->lo_width && uwidth == reflect->hi_width && is_periodic == reflect->is_periodic){ if ((adesc->order == MPI_ORDER_FORTRAN && target_dim != ndims - 1) || (adesc->order == MPI_ORDER_C && target_dim != 0)){ goto init_comm; } else if (reflect->prev_pcopy_sched_type != shadow_comm_type){ count = reflect->count; blocklength = reflect->blocklength; stride = reflect->stride; goto alloc_buf; } } // // setup data_type // if (adesc->order == MPI_ORDER_FORTRAN){ /* for XMP/F */ count = 1; blocklength = type_size; stride = ainfo[0].alloc_size * type_size; for (int i = ndims - 2; i >= target_dim; i--){ count *= ainfo[i+1].alloc_size; } for (int i = 1; i <= target_dim; i++){ blocklength *= ainfo[i-1].alloc_size; stride *= ainfo[i].alloc_size; } } else if (adesc->order == MPI_ORDER_C){ /* for XMP/C */ count = 1; blocklength = type_size; stride = ainfo[ndims-1].alloc_size * type_size; for (int i = 1; i <= target_dim; i++){ count *= ainfo[i-1].alloc_size; } for (int i = ndims - 2; i >= target_dim; i--){ blocklength *= ainfo[i+1].alloc_size; stride *= ainfo[i].alloc_size; } } else { _XMP_fatal("cannot determin the base language."); } // // calculate base address // alloc_buf: // for lower reflect if (lwidth){ lo_send_array = array_addr; lo_recv_array = array_addr; for (int i = 0; i < ndims; i++) { int lb_send, lb_recv; unsigned long long dim_acc; if (i == target_dim) { lb_send = ainfo[i].local_upper - lwidth + 1; lb_recv = ainfo[i].shadow_size_lo - lwidth;; } else { // Note: including shadow area lb_send = 0; lb_recv = 0; } dim_acc = ainfo[i].dim_acc; lo_send_array = (void *)((char *)lo_send_array + lb_send * dim_acc * type_size); lo_recv_array = (void *)((char *)lo_recv_array + lb_recv * dim_acc * type_size); } } // for upper reflect if (uwidth){ hi_send_array = array_addr; hi_recv_array = array_addr; for (int i = 0; i < ndims; i++) { int lb_send, lb_recv; unsigned long long dim_acc; if (i == target_dim) { lb_send = ainfo[i].local_lower; lb_recv = ainfo[i].local_upper + 1; } else { // Note: including shadow area lb_send = 0; lb_recv = 0; } dim_acc = ainfo[i].dim_acc; hi_send_array = (void *)((char *)hi_send_array + lb_send * dim_acc * type_size); hi_recv_array = (void *)((char *)hi_recv_array + lb_recv * dim_acc * type_size); } } // // Allocate buffers // if (reflect->prev_pcopy_sched_type == _XMP_COMM_REFLECT && ((adesc->order == MPI_ORDER_FORTRAN && target_dim == ndims - 1) || (adesc->order == MPI_ORDER_C && target_dim == 0))){ ; } else { _XMP_free(reflect->lo_send_buf); _XMP_free(reflect->lo_recv_buf); _XMP_free(reflect->hi_send_buf); _XMP_free(reflect->hi_recv_buf); } // for lower reflect if (lwidth){ lo_buf_size = lwidth * blocklength * count; if (shadow_comm_type == _XMP_COMM_REFLECT && ((adesc->order == MPI_ORDER_FORTRAN && target_dim == ndims - 1) || (adesc->order == MPI_ORDER_C && target_dim == 0))){ lo_send_buf = lo_send_array; lo_recv_buf = lo_recv_array; } else { _XMP_TSTART(t0); lo_send_buf = _XMP_alloc(lo_buf_size); lo_recv_buf = _XMP_alloc(lo_buf_size); _XMP_TEND2(xmptiming_.t_mem, xmptiming_.tdim_mem[target_dim], t0); } } // for upper reflect if (uwidth){ hi_buf_size = uwidth * blocklength * count; if (shadow_comm_type == _XMP_COMM_REFLECT && ((adesc->order == MPI_ORDER_FORTRAN && target_dim == ndims - 1) || (adesc->order == MPI_ORDER_C && target_dim == 0))){ hi_send_buf = hi_send_array; hi_recv_buf = hi_recv_array; } else { _XMP_TSTART(t0); hi_send_buf = _XMP_alloc(hi_buf_size); hi_recv_buf = _XMP_alloc(hi_buf_size); _XMP_TEND2(xmptiming_.t_mem, xmptiming_.tdim_mem[target_dim], t0); } } // // cache schedule // reflect->count = count; reflect->blocklength = blocklength; reflect->stride = stride; reflect->lo_send_array = lo_send_array; reflect->lo_recv_array = lo_recv_array; reflect->hi_send_array = hi_send_array; reflect->hi_recv_array = hi_recv_array; reflect->lo_send_buf = lo_send_buf; reflect->lo_recv_buf = lo_recv_buf; reflect->hi_send_buf = hi_send_buf; reflect->hi_recv_buf = hi_recv_buf; // // initialize communication // int src, dst; init_comm: if (!is_periodic && my_pos == lb_pos){ // no periodic lo_rank = MPI_PROC_NULL; } if (!is_periodic && my_pos == ub_pos){ // no periodic hi_rank = MPI_PROC_NULL; } lo_buf_size = lwidth * reflect->blocklength * reflect->count; hi_buf_size = uwidth * reflect->blocklength * reflect->count; // for lower shadow if (lwidth){ src = lo_rank; dst = hi_rank; } else { src = MPI_PROC_NULL; dst = MPI_PROC_NULL; } if (shadow_comm_type == _XMP_COMM_REDUCE_SHADOW){ if (reflect->req_reduce[0] != MPI_REQUEST_NULL){ MPI_Request_free(&reflect->req_reduce[0]); } if (reflect->req_reduce[1] != MPI_REQUEST_NULL){ MPI_Request_free(&reflect->req_reduce[1]); } MPI_Send_init(reflect->lo_recv_buf, lo_buf_size, MPI_BYTE, src, _XMP_N_MPI_TAG_REFLECT_LO, *comm, &reflect->req_reduce[0]); MPI_Recv_init(reflect->lo_send_buf, lo_buf_size, MPI_BYTE, dst, _XMP_N_MPI_TAG_REFLECT_LO, *comm, &reflect->req_reduce[1]); } else { if (reflect->req[0] != MPI_REQUEST_NULL){ MPI_Request_free(&reflect->req[0]); } if (reflect->req[1] != MPI_REQUEST_NULL){ MPI_Request_free(&reflect->req[1]); } MPI_Recv_init(reflect->lo_recv_buf, lo_buf_size, MPI_BYTE, src, _XMP_N_MPI_TAG_REFLECT_LO, *comm, &reflect->req[0]); MPI_Send_init(reflect->lo_send_buf, lo_buf_size, MPI_BYTE, dst, _XMP_N_MPI_TAG_REFLECT_LO, *comm, &reflect->req[1]); } // for upper shadow if (uwidth){ src = hi_rank; dst = lo_rank; } else { src = MPI_PROC_NULL; dst = MPI_PROC_NULL; } if (shadow_comm_type == _XMP_COMM_REDUCE_SHADOW){ if (reflect->req_reduce[2] != MPI_REQUEST_NULL){ MPI_Request_free(&reflect->req_reduce[2]); } if (reflect->req_reduce[3] != MPI_REQUEST_NULL){ MPI_Request_free(&reflect->req_reduce[3]); } MPI_Send_init(reflect->hi_recv_buf, hi_buf_size, MPI_BYTE, src, _XMP_N_MPI_TAG_REFLECT_HI, *comm, &reflect->req_reduce[2]); MPI_Recv_init(reflect->hi_send_buf, hi_buf_size, MPI_BYTE, dst, _XMP_N_MPI_TAG_REFLECT_HI, *comm, &reflect->req_reduce[3]); } else { if (reflect->req[2] != MPI_REQUEST_NULL){ MPI_Request_free(&reflect->req[2]); } if (reflect->req[3] != MPI_REQUEST_NULL){ MPI_Request_free(&reflect->req[3]); } MPI_Recv_init(reflect->hi_recv_buf, hi_buf_size, MPI_BYTE, src, _XMP_N_MPI_TAG_REFLECT_HI, *comm, &reflect->req[2]); MPI_Send_init(reflect->hi_send_buf, hi_buf_size, MPI_BYTE, dst, _XMP_N_MPI_TAG_REFLECT_HI, *comm, &reflect->req[3]); } reflect->prev_pcopy_sched_type = shadow_comm_type; reflect->lo_rank = lo_rank; reflect->hi_rank = hi_rank; }