void AutoAway::goIdle() {
idle = true;
AutoAwayStatus aas(idle, idle_time, this);
events_i->fire_event(aas);
if(current_settings.enable) {
QStringList protos = accounts_i->protocol_names();
foreach(QString proto_name, protos) {
QStringList account_ids = accounts_i->account_ids(proto_name);
foreach(QString account_id, account_ids) {
Account *acc = accounts_i->account_info(proto_name, account_id);
if(acc->status != ST_OFFLINE && acc->status != ST_INVISIBLE) {
if(current_settings.restore) saved_status[acc] = acc->status;
AccountStatusReq asr(acc, current_settings.status, this);
events_i->fire_event(asr);
}
}
int main()
{
// ========================================================================
std::cout << " Create an amino acid sequence" << std::endl;
libaas::AminoAcidSequence aas("DCGTQS");
// ========================================================================
std::cout << " Add a standard modification" << std::endl;
libaas::modifications::Modification mod1("Acetyl");
aas.applyModificationAtPosition(mod1, 2);
libaas::modifications::Modification mod2("Oxidation");
libaas::AminoAcidSequence::ModificationList ml;
ml.push_back(mod2);
aas.applyFixedModifications(ml);
// ========================================================================
std::cout << " Add a custom modification" << std::endl;
// start creating custom raw modification
libaas::modifications::RawModificationImpl::RawModificationImplKeyType id =
"My Mod";
libaas::String name = "My mod";
libaas::String fullName = "My mod is special";
libaas::Bool verified = true;
libaas::modifications::RawModificationImpl customMod(id, name, fullName,
verified);
libaas::String altName = "My mod is super special";
customMod.addAltName(altName);
libaas::Stoichiometry myStoichiometry;
myStoichiometry.set(libaas::elements::Element(8), 1);
myStoichiometry.set(libaas::elements::Element(1), 1);
customMod.setStoichiometry(myStoichiometry);
customMod.addSpecificity(
libaas::modifications::Specificity(
libaas::aminoAcids::RawAminoAcid('D'),
libaas::modifications::Specificity::ANYWHERE,
libaas::modifications::Specificity::ARTEFACT));
// add custom raw modification
addRawModification(customMod);
aas.applyModificationAtPosition(id, 1);
// ========================================================================
std::cout << " Remove a modifications" << std::endl;
// ========================================================================
std::cout << " a remove mod by key" << std::endl;
aas.remove("Oxidation");
// ========================================================================
std::cout << " b remove mod by ref" << std::endl;
aas.remove(mod1);
// ========================================================================
std::cout << " Apply stoichiometry config" << std::endl;
libaas::StoichiometryConfigImpl::StoichiometryConfigImplKeyType custom_key =
"My_Stoichiometry_Configuration 1";
libaas::StoichiometryConfigImpl customConfig(custom_key);
// create custom element ...
libaas::elements::ElementImpl customElement(
libaas::elements::ElementImpl::getNextId(), "C", 6);
customElement.addIsotope(13.0034, 1.0);
libaas::elements::Element customElementRef(customElement);
// ... and add by instance of an element
customConfig.insertElement(
libaas::elements::Element(customElement.getId()));
addStoichiometryConfig(customConfig);
aas.applyAminoAcidStoichiometryConfig(custom_key);
aas.applyModificationStoichiometryConfig(custom_key);
// ========================================================================
std::cout << " Retrieve the stoichiometry" << std::endl;
aas.getStoichiometry();
return 0;
}
