void bedToBigBed(char *inName, char *chromSizes, char *outName)
/* bedToBigBed - Convert bed file to bigBed.. */
{
struct slName *extraIndexList = slNameListFromString(extraIndex, ',');
struct asObject *as = asParseText(asText);
if (as == NULL)
errAbort("AutoSql file (%s) not in legal format.", asFile);
asCompareObjAgainstStandardBed(as, bedN, TRUE); // abort if bedN columns are not standard
bbFileCreate(inName, chromSizes, blockSize, itemsPerSlot, asText, as,
doCompress, extraIndexList, outName);
}
struct asObject *getAsObj(int columnCount)
/* If the -as=table.as option was given, parse the autoSql file into an asObject.
* Otherwise try to deduce autoSql from type; if no type info, just return NULL. */
{
struct asObject *asObj = NULL;
if (as != NULL)
{
asObj = asParseFile(as);
if (asObj->next != NULL)
errAbort("Can only handle .as files containing a single object.");
if (typeBedN > 0)
// abort if -type=bedN columns are not standard
asCompareObjAgainstStandardBed(asObj, typeBedN, TRUE);
}
else if (bedDetail)
asObj = bedDetailAsObj();
else if (typeBedN > 0)
{
char *asText = bedAsDef(typeBedN, columnCount);
asObj = asParseText(asText);
freeMem(asText);
}
return asObj;
}
