static void cactusDisk_writeBinaryRepresentation(CactusDisk *cactusDisk,
void (*writeFn)(const void * ptr, size_t size, size_t count)) {
binaryRepresentation_writeElementType(CODE_CACTUS_DISK, writeFn);
binaryRepresentation_writeBool(cactusDisk->storeSequencesInAFile, writeFn);
if (cactusDisk->storeSequencesInAFile) {
assert(cactusDisk->sequencesFileName != NULL);
binaryRepresentation_writeString(cactusDisk->sequencesFileName, writeFn);
}
binaryRepresentation_writeElementType(CODE_CACTUS_DISK, writeFn);
}
void flower_writeBinaryRepresentation(Flower *flower, void(*writeFn)(const void * ptr, size_t size, size_t count)) {
Flower_SequenceIterator *sequenceIterator;
Flower_EndIterator *endIterator;
Flower_BlockIterator *blockIterator;
Flower_GroupIterator *groupIterator;
Flower_ChainIterator *chainIterator;
Sequence *sequence;
End *end;
Block *block;
Group *group;
Chain *chain;
binaryRepresentation_writeElementType(CODE_FLOWER, writeFn);
binaryRepresentation_writeName(flower_getName(flower), writeFn);
binaryRepresentation_writeBool(flower_builtBlocks(flower), writeFn);
binaryRepresentation_writeBool(flower_builtTrees(flower), writeFn);
binaryRepresentation_writeBool(flower_builtFaces(flower), writeFn);
binaryRepresentation_writeName(flower->parentFlowerName, writeFn);
if (flower_getEventTree(flower) != NULL) {
eventTree_writeBinaryRepresentation(flower_getEventTree(flower), writeFn);
}
sequenceIterator = flower_getSequenceIterator(flower);
while ((sequence = flower_getNextSequence(sequenceIterator)) != NULL) {
sequence_writeBinaryRepresentation(sequence, writeFn);
}
flower_destructSequenceIterator(sequenceIterator);
endIterator = flower_getEndIterator(flower);
while ((end = flower_getNextEnd(endIterator)) != NULL) {
end_writeBinaryRepresentation(end, writeFn);
}
flower_destructEndIterator(endIterator);
blockIterator = flower_getBlockIterator(flower);
while ((block = flower_getNextBlock(blockIterator)) != NULL) {
block_writeBinaryRepresentation(block, writeFn);
}
flower_destructBlockIterator(blockIterator);
groupIterator = flower_getGroupIterator(flower);
while ((group = flower_getNextGroup(groupIterator)) != NULL) {
group_writeBinaryRepresentation(group, writeFn);
}
flower_destructGroupIterator(groupIterator);
chainIterator = flower_getChainIterator(flower);
while ((chain = flower_getNextChain(chainIterator)) != NULL) {
chain_writeBinaryRepresentation(chain, writeFn);
}
flower_destructChainIterator(chainIterator);
binaryRepresentation_writeElementType(CODE_FLOWER, writeFn); //this avoids interpretting things wrong.
}
void eventTree_writeBinaryRepresentation(EventTree *eventTree, void (*writeFn)(const void * ptr, size_t size, size_t count)) {
int64_t i;
Event *event;
event = eventTree_getRootEvent(eventTree);
binaryRepresentation_writeElementType(CODE_EVENT_TREE, writeFn);
binaryRepresentation_writeName(event_getName(event), writeFn);
for(i=0; i<event_getChildNumber(event); i++) {
eventTree_writeBinaryRepresentationP(event_getChild(event, i), writeFn);
}
binaryRepresentation_writeElementType(CODE_EVENT_TREE, writeFn);
}
void testBinaryRepresentation_elementType(CuTest* testCase) {
cactusSerialisationTestSetup();
void *vA2 = vA;
binaryRepresentation_writeElementType(CODE_ADJACENCY, writeFn);
binaryRepresentation_writeElementType(CODE_LINK, writeFn);
CuAssertTrue(testCase, binaryRepresentation_peekNextElementType(vA2) == CODE_ADJACENCY);
CuAssertTrue(testCase, binaryRepresentation_popNextElementType(&vA2) == CODE_ADJACENCY);
CuAssertTrue(testCase, binaryRepresentation_peekNextElementType(vA2) == CODE_LINK);
CuAssertTrue(testCase, binaryRepresentation_popNextElementType(&vA2) == CODE_LINK);
cactusSerialisationTestTeardown();
}
void event_writeBinaryRepresentation(Event *event, void(*writeFn)(
const void * ptr, size_t size, size_t count)) {
binaryRepresentation_writeElementType(CODE_EVENT, writeFn);
binaryRepresentation_writeName(event_getName(event_getParent(event)),
writeFn);
binaryRepresentation_writeName(event_getName(event), writeFn);
binaryRepresentation_writeFloat(event_getBranchLength(event), writeFn);
binaryRepresentation_writeString(event_getHeader(event), writeFn);
binaryRepresentation_writeBool(event_isOutgroup(event), writeFn);
}
void metaSequence_writeBinaryRepresentation(MetaSequence *metaSequence,
void (*writeFn)(const void * ptr, size_t size, size_t count)) {
binaryRepresentation_writeElementType(CODE_META_SEQUENCE, writeFn);
binaryRepresentation_writeName(metaSequence_getName(metaSequence), writeFn);
binaryRepresentation_writeInteger(metaSequence_getStart(metaSequence), writeFn);
binaryRepresentation_writeInteger(metaSequence_getLength(metaSequence), writeFn);
binaryRepresentation_writeName(metaSequence_getEventName(metaSequence), writeFn);
binaryRepresentation_writeName(metaSequence->stringName, writeFn);
binaryRepresentation_writeString(metaSequence_getHeader(metaSequence), writeFn);
binaryRepresentation_writeBool(metaSequence_isTrivialSequence(metaSequence), writeFn);
}
void sequence_writeBinaryRepresentation(Sequence *sequence, void (*writeFn)(const void * ptr, size_t size, size_t count)) {
binaryRepresentation_writeElementType(CODE_SEQUENCE, writeFn);
binaryRepresentation_writeName(sequence_getName(sequence), writeFn);
}
