void testBlock_getChain(CuTest* testCase) {
cactusBlockTestSetup();
Block *block2 = block_construct(2, flower);
Flower *flower2 = flower_construct(cactusDisk);
eventTree_copyConstruct(flower_getEventTree(flower), flower2, NULL);
end_copyConstruct(block_get3End(block), flower2);
end_copyConstruct(block_get5End(block2), flower2);
Group *group = group_construct(flower, flower2);
Chain *chain = chain_construct(flower);
link_construct(block_get3End(block), block_get5End(block2), group, chain);
CuAssertTrue(testCase, block_getChain(block_construct(2, flower)) == NULL);
CuAssertTrue(testCase, block_getChain(block) == chain);
CuAssertTrue(testCase, block_getChain(block2) == chain);
cactusBlockTestTeardown();
}
void mapBlockToExon(Cap *cap, int level, FILE *fileHandle){
fprintf(fileHandle, "\t\t\t<block>\n");
Block *block = end_getBlock(cap_getEnd(cap));
Chain *chain = block_getChain(block);
int start = cap_getCoordinate(cap);
int end = cap_getCoordinate(cap_getOtherSegmentCap(cap)) +1;
fprintf(fileHandle, "\t\t\t\t<blockName>%s</blockName>\n", cactusMisc_nameToString(block_getName(block)));
if(chain != NULL){
fprintf(fileHandle, "\t\t\t\t<chainName>%s</chainName>\n", cactusMisc_nameToString(chain_getName(chain)));
}else{
fprintf(fileHandle, "\t\t\t\t<chainName>NA</chainName>\n");
}
fprintf(fileHandle, "\t\t\t\t<level>%d</level>\n", level);
fprintf(fileHandle, "\t\t\t\t<start>%d</start>\n", start);
fprintf(fileHandle, "\t\t\t\t<end>%d</end>\n", end);
fprintf(fileHandle, "\t\t\t</block>\n");
st_logInfo("mapBlockToExon: start: %d, end: %d\n", start, end);
}
