void COSBindingNode::prune()
{
CosNaming::Name_var contextName;
for(unsigned i=0; i < branches(); i++) {
_branches.at(i)->prune();
}
//If all branches are dead, mark this node as dead. It will later be unbound by its parent node.
if (allBranchesDead()) {
_isDead = true;
}
//Unbind all dead branches
for (unsigned i = 0; i < branches(); i++) {
if (_branches.at(i)->isDead()) {
contextName = omni::omniURI::stringToName(
_branches.at(i)->getName().c_str());
context->unbind(contextName);
}
}
//if (isDead()) {
// // unregisterNode();
//}
}
void BaseTreeView::restoreLayout(KConfig *config, const QString &group)
{
KListView::restoreLayout(config, group);
KConfigGroupSaver saver(config, group);
setShowToolTips( config->readBoolEntry("ShowToolTips", true) );
if (! m_saveOpenFolder || ! qConfig.saveTrees)
return;
BaseTreeBranch *btb;
KFileTreeBranchIterator it( branches() );
int maxBranch = config->readNumEntry("NumOpenFolderList", 0);
for (int i = 1; i <= maxBranch; ++i)
{
QStringList folderList = QuantaCommon::readPathListEntry(config, "OpenFolderList" + QString::number(i));
if (folderList.count() > 1) {
KURL rootURL = (*folderList.begin());
folderList.remove(folderList.begin()); // remove the root URL
KFileTreeBranchIterator it( branches() );
for ( ; it.current(); ++it)
{
if ((*it)->rootUrl() == rootURL) {
btb = dynamic_cast<BaseTreeBranch *>( (*it) );
if (btb) {
btb->folderToOpen = folderList;
btb->reopenFolder();
break;
}
}
}
}
}
}
FileTreeViewItem *ScanGallery::findItemByUrl(const KUrl &url, FileTreeBranch *branch)
{
KUrl u(url);
if (u.protocol()=="file") // for local files,
{
QDir d(url.path()); // ensure path is canonical
u.setPath(d.canonicalPath());
}
kDebug() << "URL search for" << u;
// Prepare a list of branches to search. If the parameter 'branch'
// is set, search only in the specified branch. If it is NULL, search
// all branches.
FileTreeBranchList branchList;
if (branch!=NULL) branchList.append(branch);
else branchList = branches();
FileTreeViewItem *foundItem = NULL;
for (FileTreeBranchList::const_iterator it = branchList.constBegin();
it!=branchList.constEnd(); ++it)
{
FileTreeBranch *branchloop = (*it);
FileTreeViewItem *ftvi = branchloop->findItemByUrl(u);
if (ftvi!=NULL)
{
foundItem = ftvi;
kDebug() << "found item for" << ftvi->url();
break;
}
}
return (foundItem);
}
bool COSBindingNode::allBranchesDead()
{
bool dead = true;
for (unsigned i = 0; i < branches(); i++) {
dead &= _branches.at(i)->isDead();
}
return hasBranches() && dead; // true if all branches of this node are dead
}
void ScanGallery::updateParent(const FileTreeViewItem *curr)
{
FileTreeBranch *branch = branches().at(0); /* There should be at least one */
if (branch==NULL) return;
KUrl dir = itemDirectory(curr);
kDebug() << "Updating directory" << dir;
branch->updateDirectory(dir);
FileTreeViewItem *parent = branch->findItemByUrl(dir);
if (parent!=NULL) parent->setExpanded(true); /* Ensure parent is expanded */
}
void K3bFileTreeView::followUrl( const KURL& url )
{
// TODO: first try the current branch
KFileTreeBranchIterator it( branches() );
for( ; *it; ++it ) {
if( !d->branchDeviceMap.contains( *it ) )
if( KFileTreeViewItem* item = (*it)->findTVIByURL( url ) ) {
setCurrentItem( item );
setSelected(item, true);
ensureItemVisible( item );
return;
}
}
}
void ScanGallery::slotSelectDirectory(const QString &branchName, const QString &relPath)
{
kDebug() << "branch" << branchName << "path" << relPath;
FileTreeViewItem *item;
if (!branchName.isEmpty()) item = findItemInBranch(branchName, relPath);
else item = findItemInBranch(branches().at(0), relPath);
// assume the 1st/only branch
if (item==NULL) return;
scrollToItem(item);
setCurrentItem(item);
slotItemActivated(item); // load thumbnails, etc.
}
DvcsJob::JobStatus GitRunner::currentBranch()
{
DvcsJob::JobStatus status = branches();
if (status != DvcsJob::JobSucceeded)
return status;
// Every branch is listed in one line. so first split by lines,
// then look for the branch marked with a "*".
QStringList list = m_result.split('\n');
QString tmp = list.takeFirst();
while (!tmp.contains('*', Qt::CaseInsensitive))
tmp = list.takeFirst();
tmp.remove(0, 2);
m_result = tmp;
return status;
}
void COSBindingNode::printNode(unsigned int offset)
{
unsigned i;
for(i = 0; i < offset; i++)
std::cerr << "*";
std::cerr << name << " ";
if( isLeaf() )
std::cerr << (isDead() ? "(Dead)" : "(Alive)");
std::cerr << std::endl;
for(i = 0; i < branches(); i++)
{
(*this)[i].printNode(offset + 1);
}
}
void BaseCheckoutWizardPage::slotRefreshBranches()
{
if (!isBranchSelectorVisible())
return;
// Refresh branch list on demand. This is hard to make
// automagically since there can be network slowness/timeouts, etc.
int current;
const QStringList branchList = branches(repository(), ¤t);
d->ui.branchComboBox->clear();
d->ui.branchComboBox->setEnabled(branchList.size() > 1);
if (!branchList.isEmpty()) {
d->ui.branchComboBox->addItems(branchList);
if (current >= 0 && current < branchList.size())
d->ui.branchComboBox->setCurrentIndex(current);
}
slotChanged();
}
void BaseTreeView::slotReloadAllTrees()
{
QPtrStack<BaseTreeBranch> stack;
BaseTreeBranch *btb;
KFileTreeBranchIterator it( branches() );
for ( ; it.current(); ++it)
{
btb = dynamic_cast<BaseTreeBranch *>( (*it) );
if (btb && btb->rootUrl().isLocalFile()) {
stack.push(btb);
}
}
while (! stack.isEmpty())
{
reload(stack.pop());
}
}
void BaseTreeView::slotDocumentClosed(const KURL& url)
{
KFileTreeViewItem * item;
KFileTreeBranchIterator it( branches() );
for ( ; it.current(); ++it)
{
item = (*it)->findTVIByURL(url);
if (item)
{
item->repaint();
}
}
/* QListViewItemIterator iter(this);
for ( ; iter.current(); ++iter )
{
iter.current()->repaint();
}*/
}
bool ScanGallery::prepareToSave(const ImageMetaInfo *info)
{
if (info==NULL) kDebug() << "no image info";
else kDebug() << "type" << info->getImageType();
delete mSaver; mSaver = NULL; // recreate with clean info
// Resolve where to save the new image when it arrives
FileTreeViewItem *curr = highlightedFileTreeViewItem();
if (curr==NULL) // into root if nothing is selected
{
FileTreeBranch *branch = branches().at(0); // there should be at least one
if (branch!=NULL)
{ // if user has created this????
curr = findItemInBranch(branch, i18n("Incoming/"));
if (curr==NULL) curr = branch->root();
}
if (curr==NULL) return (false); // should never happen
curr->setSelected(true);
}
mSavedTo = curr; // note for selecting later
// Create the ImgSaver to use later
KUrl dir(itemDirectory(curr)); // where new image will go
mSaver = new ImgSaver(dir); // create saver to use later
if (info!=NULL) // have image information,
{ // tell saver about it
ImgSaver::ImageSaveStatus stat = mSaver->setImageInfo(info);
if (stat==ImgSaver::SaveStatusCanceled) return (false);
}
return (true); // all ready to save
}
void BaseTreeView::saveLayout(KConfig *config, const QString &group)
{
KListView::saveLayout(config, group);
if (! m_saveOpenFolder || ! qConfig.saveTrees)
return;
KConfigGroupSaver saver(config, group);
BaseTreeBranch *btb;
int i = 0;
KFileTreeBranchIterator it( branches() );
for ( ; it.current(); ++it)
{
btb = dynamic_cast<BaseTreeBranch *>( (*it) );
if (btb && btb->rootUrl().isLocalFile()) {
++i;
QStringList folderList;
// remember the root url so that I find the branch on restore
folderList.append(btb->rootUrl().url());
btb->addOpenFolder(&folderList);
config->writePathEntry("OpenFolderList" + QString::number(i), folderList);
}
}
config->writeEntry("NumOpenFolderList", i);
}
bool COSBindingNode::hasBranches() const
{
return ( branches() > 0 );
}
void HiForest::correlateTracks(TTree* jetTree, Jets& jets, bool allEvents, bool smeared){
vector<TBranch*> branches(0);
if(allEvents || currentEvent == 0){
if(1){
jtChg = new Float_t[maxEntry];
jtNeut = new Float_t[maxEntry];
jtEM = new Float_t[maxEntry];
jtChgGen = new Float_t[maxEntry];
jtNeutGen = new Float_t[maxEntry];
jtEMGen = new Float_t[maxEntry];
jtPtMax = new Float_t[maxEntry];
jtPtMean = new Float_t[maxEntry];
jtPtMeanW = new Float_t[maxEntry];
jtLeadType = new Int_t[maxEntry];
}
tjDeltaEtaLead = new Float_t[maxEntryTrack];
tjDeltaPhiLead = new Float_t[maxEntryTrack];
zLead = new Float_t[maxEntryTrack];
tjDeltaEtaSubLead = new Float_t[maxEntryTrack];
tjDeltaPhiSubLead = new Float_t[maxEntryTrack];
zSubLead = new Float_t[maxEntryTrack];
zOldLead = new Float_t[maxEntryTrack];
zOldSubLead = new Float_t[maxEntryTrack];
zSingleLead = new Float_t[maxEntryTrack];
zLabLead = new Float_t[maxEntryTrack];
tjDeltaThetaLead = new Float_t[maxEntryTrack];
tjDeltaThetaLabLead = new Float_t[maxEntryTrack];
tjDeltaThetaSingleLead = new Float_t[maxEntryTrack];
zSingleSubLead = new Float_t[maxEntryTrack];
zLabSubLead = new Float_t[maxEntryTrack];
tjDeltaThetaSubLead = new Float_t[maxEntryTrack];
tjDeltaThetaLabSubLead = new Float_t[maxEntryTrack];
tjDeltaThetaSingleSubLead = new Float_t[maxEntryTrack];
corrLead = new Float_t[maxEntryTrack];
corrSubLead = new Float_t[maxEntryTrack];
branches.push_back(jetTree->Branch("jtChg",jtChg,"jtChg[nref]/F"));
branches.push_back(jetTree->Branch("jtNeut",jtNeut,"jtNeut[nref]/F"));
branches.push_back(jetTree->Branch("jtEM",jtEM,"jtEM[nref]/F"));
branches.push_back(jetTree->Branch("jtChgGen",jtChgGen,"jtChgGen[nref]/F"));
branches.push_back(jetTree->Branch("jtNeutGen",jtNeutGen,"jtNeutGen[nref]/F"));
branches.push_back(jetTree->Branch("jtEMGen",jtEMGen,"jtEMGen[nref]/F"));
branches.push_back(jetTree->Branch("jtPtMax",jtPtMax,"jtPtMax[nref]/F"));
branches.push_back(jetTree->Branch("jtPtMean",jtPtMean,"jtPtMean[nref]/F"));
branches.push_back(jetTree->Branch("jtPtMeanW",jtPtMeanW,"jtPtMeanW[nref]/F"));
branches.push_back(jetTree->Branch("jtLeadType",jtLeadType,"jtLeadType[nref]/I"));
branches.push_back(trackTree->Branch("tjDetaLead",tjDeltaEtaLead,"tjDetaLead[nTrk]/F"));
branches.push_back(trackTree->Branch("tjDphiLead",tjDeltaPhiLead,"tjDphiLead[nTrk]/F"));
branches.push_back(trackTree->Branch("zLead",zLead,"zLead[nTrk]/F"));
branches.push_back(trackTree->Branch("tjDetaSubLead",tjDeltaEtaSubLead,"tjDetaSubLead[nTrk]/F"));
branches.push_back(trackTree->Branch("tjDphiSubLead",tjDeltaPhiSubLead,"tjDphiSubLead[nTrk]/F"));
branches.push_back(trackTree->Branch("zSubLead",zSubLead,"zSubLead[nTrk]/F"));
branches.push_back(trackTree->Branch("zOldLead",zOldLead,"zOldLead[nTrk]/F"));
branches.push_back(trackTree->Branch("zOldSubLead",zOldSubLead,"zOldSubLead[nTrk]/F"));
branches.push_back(trackTree->Branch("zSingleLead",zSingleLead,"zSingleLead[nTrk]/F"));
branches.push_back(trackTree->Branch("zSingleSubLead",zSingleSubLead,"zSingleSubLead[nTrk]/F"));
branches.push_back(trackTree->Branch("zLabLead",zLabLead,"zLabLead[nTrk]/F"));
branches.push_back(trackTree->Branch("zLabSubLead",zSubLead,"zLabSubLead[nTrk]/F"));
branches.push_back(trackTree->Branch("tjDthetaLead",tjDeltaThetaLead,"tjDthetaLead[nTrk]/F"));
branches.push_back(trackTree->Branch("tjDthetaLabLead",tjDeltaThetaLabLead,"tjDthetaLabLead[nTrk]/F"));
branches.push_back(trackTree->Branch("tjDthetaSingleLead",tjDeltaThetaSingleLead,"tjDthetaSingleLead[nTrk]/F"));
branches.push_back(trackTree->Branch("tjDthetaSubLead",tjDeltaThetaSubLead,"tjDthetaSubLead[nTrk]/F"));
branches.push_back(trackTree->Branch("tjDthetaLabSubLead",tjDeltaThetaLabSubLead,"tjDthetaLabSubLead[nTrk]/F"));
branches.push_back(trackTree->Branch("tjDthetaSingleSubLead",tjDeltaThetaSingleSubLead,"tjDthetaSingleSubLead[nTrk]/F"));
branches.push_back(trackTree->Branch("corrLead",corrLead,"corrLead[nTrk]/F"));
branches.push_back(trackTree->Branch("corrSubLead",corrSubLead,"corrSubLead[nTrk]/F"));
jetTree->SetAlias("jtFracChg","jtChg/jtpt");
jetTree->SetAlias("jtFracNeut","jtNeut/jtpt");
jetTree->SetAlias("jtFracEM","jtFracEM/jtpt");
jetTree->SetAlias("refFracChg","jtChg/refpt");
jetTree->SetAlias("refFracNeut","jtNeut/refpt");
jetTree->SetAlias("refFracEM","jtFracEM/refpt");
jetTree->SetAlias("jtFracChgGen","jtChgGen/jtpt");
jetTree->SetAlias("jtFracNeutGen","jtNeutGen/refpt");
jetTree->SetAlias("jtFracEMGen","jtFracEMGen/refpt");
trackTree->SetAlias("tjDRlead","sqrt(tjDetaLead*tjDetaLead+tjDphiLead*tjDphiLead)");
trackTree->SetAlias("tjDRsublead","sqrt(tjDetaSubLead*tjDetaSubLead+tjDphiSubLead*tjDphiSubLead)");
}
double correctionFactors[4] = {0,0,0,0};
for (int i=0; allEvents ? i<GetEntries() : 1;i++){
if(i % 1000 == 0) cout<<"Processing Event : "<<i<<endl;
if(allEvents){
jetTree->GetEntry(i);
trackTree->GetEntry(i);
hltTree->GetEntry(i);
}
int cbin = evt.hiBin;
if(collisionMode == cPP) cbin = 33;
double eventEta = 0;
if(hasDiJet(jets)) eventEta = (jets.jteta[jtLead]+jets.jteta[jtSubLead])/2.;
for(int j = 0; j < jets.nref; ++j){
jtChg[j] = 0;
jtNeut[j] = 0;
jtEM[j] = 0;
jtPtMax[j] = 0;
jtPtMean[j] = 0;
jtPtMeanW[j] = 0;
jtLeadType[j] = 0;
for (int t = 0; t < track.nTrk; ++t) {
double jetPt = jets.jtpt[j];
if(smeared)jetPt = jets.smpt[j];
if(j == jtLead){
tjDeltaEtaLead[t] = track.trkEta[t] - jets.jteta[j];
tjDeltaPhiLead[t] = deltaPhi(track.trkPhi[t],jets.jtphi[j]);
zOldLead[t] = track.trkPt[t]/jetPt;
zLead[t] = getProjectedZ(jetPt,jets.jteta[j],jets.jtphi[j],track.trkPt[t],track.trkEta[t],track.trkPhi[t],eventEta);
// cout<<"jtpt : "<<jets.jtpt[j]<<" spt : "<<jets.smpt[j]<<endl;
corrLead[t] = trackCorrections[0]->GetCorr(track.trkPt[t],track.trkEta[t],jetPt,cbin,correctionFactors);
}
if(j == jtSubLead){
tjDeltaEtaSubLead[t] = track.trkEta[t] - jets.jteta[j];
tjDeltaPhiSubLead[t] = deltaPhi(track.trkPhi[t],jets.jtphi[j]);
zSubLead[t] = getProjectedZ(jetPt,jets.jteta[j],jets.jtphi[j],track.trkPt[t],track.trkEta[t],track.trkPhi[t],eventEta);
zOldSubLead[t] = track.trkPt[t]/jetPt;
corrSubLead[t] = trackCorrections[1]->GetCorr(track.trkPt[t],track.trkEta[t],jetPt,cbin,correctionFactors);
}
double dr = deltaR(track.trkEta[t],track.trkPhi[t],jets.jteta[j],jets.jtphi[j]);
if(dr > cone) continue;
if(jtPtMax[j] < track.trkPt[t]) jtPtMax[j] = track.trkPt[t];
jtChg[j] += track.trkPt[t];
}
}
for(unsigned int ib = 0; ib < branches.size(); ++ib){
branches[ib]->Fill();
}
}
return;
}
void HiForest::sortJets(TTree* jetTree, Jets& jets, double etaMax, double ptMin, bool allEvents, int smearType){
jetsmear::JetResolution* res = 0;
if(smearType==0){
res = new jetsmear::JetResolution();
}
vector<TBranch*> branches(0);
if(allEvents || currentEvent == 0){
branches.push_back(jetTree->Branch("Lead",&jtLead,"Lead/I"));
branches.push_back(jetTree->Branch("SubLead",&jtSubLead,"SubLead/I"));
branches.push_back(jetTree->Branch("HasDijet",&jtHasDijet,"HasDijet/O"));
branches.push_back(jetTree->Branch("HasLeadingJet",&jtHasLeadingJet,"HasLeadingJet/O"));
if(smearType==0 && !mc){
branches.push_back(jetTree->Branch("smpt",jets.smpt,"smpt[nref]/F"));
}
jetTree->SetAlias("AJ","(jtpt[Lead]-jtpt[SubLead])/(jtpt[Lead]+jtpt[SubLead])");
jetTree->SetAlias("dijetEta","(jteta[Lead]+jteta[SubLead])/2.");
}
vector<JetIndex> vecs;
vecs.reserve(maxEntry);
for (int i=0; allEvents ? i<GetEntries() : 1;i++){
if(verbose && i % 50000 == 0) cout<<"Processing Event : "<<i<<endl;
if(allEvents){
jetTree->GetEntry(i);
}
vecs.clear();
if(smearType == 0)res->roll();
for(int j = 0; j < jets.nref; ++j){
// if(jets.jtpt[j] < ptMin) continue;
if(fabs(jets.jteta[j]) > etaMax) continue;
JetIndex entry;
entry.pt = jets.jtpt[j];
entry.index = j;
if(smearType == 0){
entry.pt += res->getFluct(jets,j);
if(collisionMode == cPbPb && i>=0) cout<<"Flucted"<<endl;
jets.smpt[j] = entry.pt;
jets.jtpt[j] = entry.pt;
}
vecs.push_back(entry);
}
sort(vecs.begin(),vecs.end(),comparePt);
jtLead=-1;
jtSubLead=-1;
jtHasLeadingJet = 0;
jtHasDijet = 0;
if(vecs.size() > 0){
jtLead = vecs[0].index;
if(smearType == 0 && jets.smpt[jtLead] > 100) jtHasLeadingJet = 1;
if(smearType != 0 && jets.jtpt[jtLead] > 100) jtHasLeadingJet = 1;
}
if(vecs.size() > 1){
jtSubLead = vecs[1].index;
if(smearType == 0 &&jets.smpt[jtSubLead] > 40){
jtHasDijet = jtHasLeadingJet && fabs(deltaPhi(jets.jtphi[jtLead],jets.jtphi[jtSubLead])) > 2.*3.1415926/3.;
}
if(smearType != 0 && jets.jtpt[jtSubLead] > 40){
jtHasDijet = jtHasLeadingJet && fabs(deltaPhi(jets.jtphi[jtLead],jets.jtphi[jtSubLead])) > 2.*3.1415926/3.;
}
}
for(int ib = 0; ib < branches.size(); ++ib){
branches[ib]->Fill();
}
}
return;
}
std::size_t
Sim::branches() const
{
return branches(allPeers);
}
bool prune_branch(NeuronTree nt, NeuronTree & result)
{
double thres = 0.05;
V3DLONG siz = nt.listNeuron.size();
vector<V3DLONG> branches(siz,0); //number of branches on the pnt: 0-tip, 1-internal, >=2-branch
for (V3DLONG i=0;i<siz;i++)
{
if (nt.listNeuron[i].pn<0) continue;
V3DLONG pid = nt.hashNeuron.value(nt.listNeuron[i].pn);
branches[pid]++;
}
double diameter = calculate_diameter(nt, branches);
printf("diameter=%.3f\n",diameter);
//calculate the shortest edge starting from each tip point
vector<bool> to_prune(siz, false);
for (V3DLONG i=0;i<siz;i++)
{
if (branches[i]!=0) continue;
//only consider tip points
vector<V3DLONG> segment;
double edge_length = 0;
V3DLONG cur = i;
V3DLONG pid;
do
{
NeuronSWC s = nt.listNeuron[cur];
segment.push_back(cur);
pid = nt.hashNeuron.value(s.pn);
edge_length += DIST(s, nt.listNeuron[pid]);
cur = pid;
}
while (branches[pid]==1 && pid>0);
if (pid<0)
{
printf("The input tree has only 1 root point. Please check.\n");
return false;
}
if (edge_length < diameter * thres)
{
for (int j=0;j<segment.size();j++)
to_prune[segment[j]] = true;
}
}
//prune branches
result.listNeuron.clear();
result.hashNeuron.clear();
for (V3DLONG i=0;i<siz;i++)
{
if (!to_prune[i])
{
NeuronSWC s = nt.listNeuron[i];
result.listNeuron.append(s);
result.hashNeuron.insert(nt.listNeuron[i].n, result.listNeuron.size()-1);
}
}
return true;
}
array<patch>
branches (patch p, int i, int j) {
ASSERT (0 <= i && i <= nr_branches (p), "index out of range");
ASSERT (i <= j && j <= nr_branches (p), "index out of range");
return range (branches (p), i, j);
}