SEXP R_mongo_collection_update(SEXP ptr_col, SEXP ptr_selector, SEXP ptr_update, SEXP ptr_filters, SEXP upsert, SEXP multiple, SEXP replace){
mongoc_collection_t *col = r2col(ptr_col);
bson_t *selector = r2bson(ptr_selector);
bson_t *update = r2bson(ptr_update);
bool success;
bson_t opts;
bson_init (&opts);
BSON_APPEND_BOOL (&opts, "upsert", Rf_asLogical(upsert));
if(!Rf_isNull(ptr_filters))
BSON_APPEND_ARRAY (&opts, "arrayFilters", r2bson(ptr_filters));
bson_error_t err;
bson_t reply;
if(Rf_asLogical(replace)){
success = mongoc_collection_replace_one(col, selector, update, &opts, &reply, &err);
} else {
success = Rf_asLogical(multiple) ?
mongoc_collection_update_many(col, selector, update, &opts, &reply, &err) :
mongoc_collection_update_one(col, selector, update, &opts, &reply, &err);
}
if(!success)
stop(err.message);
return bson2list(&reply);
}
SEXP R_mongo_client_server_status(SEXP ptr_client) {
bson_t reply;
bson_error_t err;
mongoc_client_t *client = r2client(ptr_client);
if(!mongoc_client_get_server_status(client, NULL, &reply, &err))
stop(err.message);
return bson2list(&reply);
}
SEXP R_mongo_collection_stats(SEXP ptr_col){
mongoc_collection_t *col = r2col(ptr_col);
bson_t reply;
bson_error_t err;
if(!mongoc_collection_stats(col, NULL, &reply, &err))
stop(err.message);
SEXP out = PROTECT(bson2list(&reply));
bson_destroy (&reply);
UNPROTECT(1);
return out;
}
SEXP R_mongo_collection_command_simple(SEXP ptr_col, SEXP command){
mongoc_collection_t *col = r2col(ptr_col);
bson_t *cmd = r2bson(command);
bson_t reply;
bson_error_t err;
if(!mongoc_collection_command_simple(col, cmd, NULL, &reply, &err))
stop(err.message);
SEXP out = PROTECT(bson2list(&reply));
bson_destroy (&reply);
UNPROTECT(1);
return out;
}
SEXP R_mongo_collection_insert_page(SEXP ptr_col, SEXP json_vec, SEXP stop_on_error){
if(!Rf_isString(json_vec) || !Rf_length(json_vec))
stop("json_vec must be character string of at least length 1");
//ordered means serial execution
bool ordered = Rf_asLogical(stop_on_error);
//create bulk operation
bson_error_t err;
bson_t *b;
bson_t reply;
mongoc_bulk_operation_t *bulk = mongoc_collection_create_bulk_operation_with_opts (r2col(ptr_col), NULL);
for(int i = 0; i < Rf_length(json_vec); i++){
b = bson_new_from_json ((uint8_t*) Rf_translateCharUTF8(Rf_asChar(STRING_ELT(json_vec, i))), -1, &err);
if(!b){
mongoc_bulk_operation_destroy (bulk);
stop(err.message);
}
mongoc_bulk_operation_insert(bulk, b);
bson_destroy (b);
b = NULL;
}
//execute bulk operation
bool success = mongoc_bulk_operation_execute (bulk, &reply, &err);
mongoc_bulk_operation_destroy (bulk);
//check for errors
if(!success){
if(ordered){
Rf_errorcall(R_NilValue, err.message);
} else {
Rf_warningcall(R_NilValue, "Not all inserts were successful: %s\n", err.message);
}
}
//get output
SEXP out = PROTECT(bson2list(&reply));
bson_destroy (&reply);
UNPROTECT(1);
return out;
}
SEXP R_mongo_cursor_next_page(SEXP ptr, SEXP size){
mongoc_cursor_t *c = r2cursor(ptr);
int n = asInteger(size);
const bson_t *b = NULL;
SEXP list = PROTECT(allocVector(VECSXP, n));
int total = 0;
for(int i = 0; i < n && mongoc_cursor_next(c, &b); i++){
SET_VECTOR_ELT(list, i, bson2list((bson_t*) b));
total++;
}
//iterator exhausted
if(total == 0){
UNPROTECT(1);
return R_NilValue;
}
//found a full page
if(total == n){
UNPROTECT(1);
return list;
}
//not a full page
SEXP shortlist = PROTECT(allocVector(VECSXP, total));
for(int i = 0; i < total; i++){
SET_VECTOR_ELT(shortlist, i, VECTOR_ELT(list, i));
}
UNPROTECT(2);
//also check for errors
bson_error_t err;
if(mongoc_cursor_error (c, &err))
stop(err.message);
return shortlist;
}
SEXP R_bson_to_list(SEXP ptr) {
bson_t *b = r2bson(ptr);
return bson2list(b);
}