/*
* Initialization function of spatial extension module which is automatically invoked
* by SBMLExtensionRegister class before main() function invoked.
*/
void
SpatialExtension::init()
{
//----------------------------------------------------------------
//
// 1. Check if the spatial package has already been registered
//
//----------------------------------------------------------------
if (SBMLExtensionRegistry::getInstance().isRegistered(getPackageName()))
{
// do nothing
return;
}
//----------------------------------------------------------------
//
// 2. Creates an SBMLExtension derived object
//
//----------------------------------------------------------------
SpatialExtension spatialExtension;
//----------------------------------------------------------------
//
// 3. Creates the SBasePlugins required by this package
//
//----------------------------------------------------------------
std::vector<std::string> packageURIs;
packageURIs.push_back(getXmlnsL3V1V1());
SBaseExtensionPoint sbmldocExtPoint("core", SBML_DOCUMENT);
SBaseExtensionPoint modelExtPoint("core", SBML_MODEL);
SBaseExtensionPoint compartmentExtPoint("core", SBML_COMPARTMENT);
SBaseExtensionPoint speciesExtPoint("core", SBML_SPECIES);
SBaseExtensionPoint parameterExtPoint("core", SBML_PARAMETER);
SBaseExtensionPoint reactionExtPoint("core", SBML_REACTION);
SBasePluginCreator<SpatialSBMLDocumentPlugin, SpatialExtension> sbmldocPluginCreator(sbmldocExtPoint, packageURIs);
SBasePluginCreator<SpatialModelPlugin, SpatialExtension> modelPluginCreator(modelExtPoint, packageURIs);
SBasePluginCreator<SpatialCompartmentPlugin, SpatialExtension> compartmentPluginCreator(compartmentExtPoint, packageURIs);
SBasePluginCreator<SpatialSpeciesPlugin, SpatialExtension> speciesPluginCreator(speciesExtPoint, packageURIs);
SBasePluginCreator<SpatialParameterPlugin, SpatialExtension> parameterPluginCreator(parameterExtPoint, packageURIs);
SBasePluginCreator<SpatialReactionPlugin, SpatialExtension> reactionPluginCreator(reactionExtPoint, packageURIs);
//----------------------------------------------------------------
//
// 4. Adds the creator objects to the extension
//
//----------------------------------------------------------------
spatialExtension.addSBasePluginCreator(&sbmldocPluginCreator);
spatialExtension.addSBasePluginCreator(&modelPluginCreator);
spatialExtension.addSBasePluginCreator(&compartmentPluginCreator);
spatialExtension.addSBasePluginCreator(&speciesPluginCreator);
spatialExtension.addSBasePluginCreator(¶meterPluginCreator);
spatialExtension.addSBasePluginCreator(&reactionPluginCreator);
//----------------------------------------------------------------
//
// 5. Register the object with the registry
//
//----------------------------------------------------------------
int result = SBMLExtensionRegistry::getInstance().addExtension(&spatialExtension);
if (result != LIBSBML_OPERATION_SUCCESS)
{
std::cerr << "[Error] SpatialExtension::init() failed." << std::endl;
}
}
/*
* Initialization function of multi extension module which is automatically invoked
* by SBMLExtensionRegister class before main() function invoked.
*/
void
MultiExtension::init()
{
//----------------------------------------------------------------
//
// 1. Check if the multi package has already been registered
//
//----------------------------------------------------------------
if (SBMLExtensionRegistry::getInstance().isRegistered(getPackageName()))
{
// do nothing
return;
}
//----------------------------------------------------------------
//
// 2. Creates an SBMLExtension derived object
//
//----------------------------------------------------------------
MultiExtension multiExtension;
//----------------------------------------------------------------
//
// 3. Creates the SBasePlugins required by this package
//
//----------------------------------------------------------------
std::vector<std::string> packageURIs;
packageURIs.push_back(getXmlnsL3V1V1());
SBaseExtensionPoint sbmldocExtPoint("core", SBML_DOCUMENT);
SBaseExtensionPoint modelExtPoint("core", SBML_MODEL);
SBaseExtensionPoint compartmentExtPoint("core", SBML_COMPARTMENT);
SBaseExtensionPoint speciesExtPoint("core", SBML_SPECIES);
SBaseExtensionPoint reactionExtPoint("core", SBML_REACTION);
SBaseExtensionPoint simplespeciesreferenceExtPoint("core", SBML_MODIFIER_SPECIES_REFERENCE);
SBaseExtensionPoint speciesreferenceExtPoint("core", SBML_SPECIES_REFERENCE);
SBasePluginCreator<MultiSBMLDocumentPlugin, MultiExtension> sbmldocPluginCreator(sbmldocExtPoint, packageURIs);
SBasePluginCreator<MultiModelPlugin, MultiExtension> modelPluginCreator(modelExtPoint, packageURIs);
SBasePluginCreator<MultiCompartmentPlugin, MultiExtension> compartmentPluginCreator(compartmentExtPoint, packageURIs);
SBasePluginCreator<MultiSpeciesPlugin, MultiExtension> speciesPluginCreator(speciesExtPoint, packageURIs);
SBasePluginCreator<MultiReactionPlugin, MultiExtension> reactionPluginCreator(reactionExtPoint, packageURIs);
SBasePluginCreator<MultiSimpleSpeciesReferencePlugin, MultiExtension> simplespeciesreferencePluginCreator(simplespeciesreferenceExtPoint, packageURIs);
SBasePluginCreator<MultiSpeciesReferencePlugin, MultiExtension> speciesreferencePluginCreator(speciesreferenceExtPoint, packageURIs);
//----------------------------------------------------------------
//
// 4. Adds the creator objects to the extension
//
//----------------------------------------------------------------
multiExtension.addSBasePluginCreator(&sbmldocPluginCreator);
multiExtension.addSBasePluginCreator(&modelPluginCreator);
multiExtension.addSBasePluginCreator(&compartmentPluginCreator);
multiExtension.addSBasePluginCreator(&speciesPluginCreator);
multiExtension.addSBasePluginCreator(&reactionPluginCreator);
multiExtension.addSBasePluginCreator(&simplespeciesreferencePluginCreator);
multiExtension.addSBasePluginCreator(&speciesreferencePluginCreator);
multiExtension.setASTBasePlugin(new MultiASTPlugin(getXmlnsL3V1V1()));
//----------------------------------------------------------------
//
// 5. Register the object with the registry
//
//----------------------------------------------------------------
int result = SBMLExtensionRegistry::getInstance().addExtension(&multiExtension);
if (result != LIBSBML_OPERATION_SUCCESS)
{
std::cerr << "[Error] MultiExtension::init() failed." << std::endl;
}
}
/*
* Initialization function of dyn extension module which is automatically invoked
* by SBMLExtensionRegister class before main() function invoked.
*/
void
DynExtension::init()
{
//----------------------------------------------------------------
//
// 1. Check if the dyn package has already been registered
//
//----------------------------------------------------------------
if (SBMLExtensionRegistry::getInstance().isRegistered(getPackageName()))
{
// do nothing
return;
}
//----------------------------------------------------------------
//
// 2. Creates an SBMLExtension derived object
//
//----------------------------------------------------------------
DynExtension dynExtension;
//----------------------------------------------------------------
//
// 3. Creates the SBasePlugins required by this package
//
//----------------------------------------------------------------
std::vector<std::string> packageURIs;
packageURIs.push_back(getXmlnsL3V1V1());
SBaseExtensionPoint sbmldocExtPoint("core", SBML_DOCUMENT);
SBaseExtensionPoint compartmentExtPoint("core", SBML_COMPARTMENT);
SBaseExtensionPoint eventExtPoint("core", SBML_EVENT);
SBaseExtensionPoint sbaseExtPoint("all", SBML_GENERIC_SBASE);
SBasePluginCreator<DynSBMLDocumentPlugin, DynExtension> sbmldocPluginCreator(sbmldocExtPoint, packageURIs);
SBasePluginCreator<DynCompartmentPlugin, DynExtension> compartmentPluginCreator(compartmentExtPoint, packageURIs);
SBasePluginCreator<DynEventPlugin, DynExtension> eventPluginCreator(eventExtPoint, packageURIs);
SBasePluginCreator<DynSBasePlugin, DynExtension> sbasePluginCreator(sbaseExtPoint, packageURIs);
//----------------------------------------------------------------
//
// 4. Adds the creator objects to the extension
//
//----------------------------------------------------------------
dynExtension.addSBasePluginCreator(&sbmldocPluginCreator);
dynExtension.addSBasePluginCreator(&compartmentPluginCreator);
dynExtension.addSBasePluginCreator(&eventPluginCreator);
dynExtension.addSBasePluginCreator(&sbasePluginCreator);
//----------------------------------------------------------------
//
// 5. Register the object with the registry
//
//----------------------------------------------------------------
int result = SBMLExtensionRegistry::getInstance().addExtension(&dynExtension);
if (result != LIBSBML_OPERATION_SUCCESS)
{
std::cerr << "[Error] DynExtension::init() failed." << std::endl;
}
}
