static void s_InitializeECNumberMaps(void)
{
CFastMutexGuard GUARD(s_ECNumberMutex);
if (s_ECNumberMapsInitialized) {
return;
}
string dir;
const char* env_val = NULL;
env_val = getenv("NCBI_ECNUM_USE_DATA_DIR_FIRST");
if (env_val != NULL && NStr::EqualNocase(env_val, "TRUE"))
{
string file = g_FindDataFile("ecnum_specific.txt");
if ( !file.empty() ) {
dir = CDirEntry::AddTrailingPathSeparator(CDirEntry(file).GetDir());
}
if (dir.empty()) {
ERR_POST_X(2, Info << "s_InitializeECNumberMaps: "
"falling back on built-in data.");
}
}
#define LOAD_EC(x) s_LoadECNumberTable \
(dir, #x, kECNum_##x, sizeof(kECNum_##x) / sizeof(*kECNum_##x), \
CProt_ref::eEC_##x)
s_ECNumSpecificStatus = LOAD_EC(specific);
s_ECNumAmbiguousStatus = LOAD_EC(ambiguous);
s_ECNumReplacedStatus = LOAD_EC(replaced);
s_ECNumDeletedStatus = LOAD_EC(deleted);
#undef LOAD_EC
s_ECNumberMapsInitialized = true;
}
static void s_InitializeECNumberMaps(void)
{
CFastMutexGuard GUARD(s_ECNumberMutex);
if (s_ECNumberMapsInitialized) {
return;
}
string dir;
{{
string file = g_FindDataFile("ecnum_specific.txt");
if ( !file.empty() ) {
dir = CDirEntry::AddTrailingPathSeparator(CDirEntry(file).GetDir());
}
}}
if (dir.empty()) {
ERR_POST_X(2, Info << "s_InitializeECNumberMaps: "
"falling back on built-in data.");
}
#define LOAD_EC(x) s_LoadECNumberTable \
(dir, #x, kECNum_##x, sizeof(kECNum_##x) / sizeof(*kECNum_##x), \
CProt_ref::eEC_##x)
LOAD_EC(specific);
LOAD_EC(ambiguous);
LOAD_EC(replaced);
LOAD_EC(deleted);
#undef LOAD_EC
s_ECNumberMapsInitialized = true;
}
static void s_InitializeOrganelleProductRules(void)
{
CFastMutexGuard GUARD(s_OrganelleProductRulesMutex);
if (s_OrganelleProductRulesInitialized) {
return;
}
s_OrganelleProductRules.Reset(new CSuspect_rule_set());
string file = g_FindDataFile("organelle_products.prt");
if ( !file.empty() ) {
auto_ptr<CObjectIStream> in;
in.reset(CObjectIStream::Open(file, eSerial_AsnText));
string header = in->ReadFileHeader();
in->Read(ObjectInfo(*s_OrganelleProductRules), CObjectIStream::eNoFileHeader);
}
if (!s_OrganelleProductRules->IsSet()) {
size_t num_lines = sizeof (s_Defaultorganelleproducts) / sizeof (char *);
string all_rules = "";
for (size_t i = 0; i < num_lines; i++) {
all_rules += s_Defaultorganelleproducts[i];
}
CNcbiIstrstream istr(all_rules.c_str());
istr >> MSerial_AsnText >> *s_OrganelleProductRules;
}
