bool ResponseEstimator::operator() (const FODSegResult& in)
{
Image::Nav::set_pos (dwi, in.get_vox(), 0, 3);
// Load the raw DWI data
Math::Vector<float> dwi_data (shared.dwis.size());
for (size_t n = 0; n < shared.dwis.size(); n++) {
dwi[3] = shared.dwis[n];
dwi_data[n] = dwi.value();
if (dwi_data[n] < 0.0)
dwi_data[n] = 0.0;
}
// Rotate the diffusion gradient orientations into a new reference frame,
// where the Z direction is defined by the FOD peak
Math::Matrix<float> R = gen_rotation_matrix (in.get_peak_dir());
Math::Matrix<float> rotated_grad (shared.grad.rows(), 4);
Math::Vector<float> vec (3), rot (3);
for (size_t row = 0; row != shared.grad.rows(); ++row) {
vec[0] = shared.grad (row, 0);
vec[1] = shared.grad (row, 1);
vec[2] = shared.grad (row, 2);
Math::mult (rot, R, vec);
rotated_grad (row, 0) = rot[0];
rotated_grad (row, 1) = rot[1];
rotated_grad (row, 2) = rot[2];
rotated_grad (row, 3) = shared.grad (row, 3);
}
// Convert directions from Euclidean space to azimuth/elevation pairs
Math::Matrix<float> dirs = DWI::gen_direction_matrix (rotated_grad, shared.dwis);
try {
// Convert the DWI signal to spherical harmonics in the new reference frame
Math::SH::Transform<float> transform (dirs, lmax);
Math::Vector<float> SH;
transform.A2SH (SH, dwi_data);
// Extract the m=0 components and save
Math::Vector<float> response (lmax/2+1);
for (size_t l = 0; l <= lmax; l += 2)
response[l/2] = SH[Math::SH::index (l, 0)];
std::lock_guard<std::mutex> lock (*mutex);
output += response;
} catch (...) {
WARN ("Invalid rotated-gradient SH transformation in voxel " + str(in.get_vox()));
}
return true;
}
static void do_render(bool alt_color)
{
glMatrixMode(GL_MODELVIEW);
glLoadIdentity();
glTranslatef(0.0f, 0.0f, -2.0f);
glRotatef(g_angle_x, 1.0f, 0.0f, 0.0f);
glRotatef(g_angle_y, 0.0f, 1.0f, 0.0f);
if (!alt_color)
glColor3f(0.3f, 0.4f, 0.7f);
else
glColor3f(0.2f, 0.3f, 0.5f);
for (World::sphere_array_t::const_iterator it = g_world->spheres.begin();
it != g_world->spheres.end(); ++it)
{
Sphere *sp = *it;
glPushMatrix();
glTranslatef(sp->origin.x, sp->origin.y, sp->origin.z);
glutSolidSphere(sp->r - sphere_r_bias, 20, 20);
glPopMatrix();
}
for (World::plane_array_t::const_iterator it = g_world->planes.begin();
it != g_world->planes.end(); ++it)
{
Plane *pl = *it;
glPushMatrix();
glm::vec3 offset = -pl->n * pl->d;
glTranslatef(offset.x, offset.y, offset.z);
glm::mat4 rot_matrix = gen_rotation_matrix(pl->n, glm::vec3(0.f, 1.f, 0.f));
glMultMatrixf(glm::value_ptr(rot_matrix));
g_plane_surface->draw();
glPopMatrix();
}
if (!alt_color)
glColor3f(0.4f, 0.7f, 0.8f);
else
glColor3f(0.75f, 0.3f, 0.25f);
g_cloth->draw();
}
