void orFile(Bits *acc, char *track, char *chrom, int chromSize)
/* Or some sort of file into bits. */
{
if (isFileType(track, "psl"))
{
fbOrPsl(acc, track, chrom, chromSize);
}
else if (isFileType(track, "bed"))
{
fbOrBed(acc, track, chrom, chromSize);
}
else if (isFileType(track, "chain"))
{
fbOrChain(acc, track, chrom, chromSize);
}
else
errAbort("can't determine file type of: %s", track);
}
// Read a file
void AViz::readFile( const QString &fn )
{
// Check if the file type was set correctly, based on
// file name
if ( strstr(qPrintable(fn), ".xyz"))
setFileType( XYZ_FILE );
if ( strstr(qPrintable(fn), "filelist.dat") || !strstr(qPrintable(fn), "."))
setFileType( ANIMATION );
if ( strstr(qPrintable(fn), ".vpm"))
setFileType( VP_FILE );
m_mainForm->readFile( fn );
m_mainForm->updateRendering();
// Launch the file list board upon reading
// a list of files
if (isFileType() == ANIMATION) {
m_mainForm->launchFileList( fn );
}
}
