Real
SolutionAux::computeValue()
{
// The value to output
Real output;
// _direct=true, extract the values using the dof
if (_direct)
{
if (isNodal())
output = _solution_object.directValue(_current_node, _var_name);
else
output = _solution_object.directValue(_current_elem, _var_name);
}
// _direct=false, extract the values using time and point
else
{
if (isNodal())
output = _solution_object.pointValue(_t, *_current_node, _var_name);
else
output = _solution_object.pointValue(_t, _current_elem->centroid(), _var_name);
}
// Apply factors and return the value
return _scale_factor*output + _add_factor;
}
GlobalDisplacementAux::GlobalDisplacementAux(const InputParameters & parameters)
: AuxKernel(parameters),
_scalar_global_strain(coupledScalarValue("scalar_global_strain")),
_component(getParam<unsigned int>("component")),
_output_global_disp(getParam<bool>("output_global_displacement")),
_pst(getUserObject<GlobalStrainUserObjectInterface>("global_strain_uo")),
_periodic_dir(_pst.getPeriodicDirections()),
_dim(_mesh.dimension()),
_ndisp(coupledComponents("displacements")),
_disp(_ndisp)
{
if (!isNodal())
paramError("variable", "GlobalDisplacementAux must be used on a nodal auxiliary variable");
if (_component >= _dim)
paramError("component",
"The component ",
_component,
" does not exist for ",
_dim,
" dimensional problems");
for (unsigned int i = 0; i < _ndisp; ++i)
_disp[i] = &coupledValue("displacements", i);
}
void
EulerAngleProvider2RGBAux::precalculateValue()
{
// ID of unique grain at current point
const int grain_id = _grain_tracker.getEntityValue((isNodal() ? _current_node->id() : _current_elem->id()),
FeatureFloodCount::FieldType::UNIQUE_REGION, 0);
// Recover euler angles for current grain
RealVectorValue angles;
if (grain_id >= 0)
angles = _euler.getEulerAngles(grain_id);
// Assign correct RGB value either from euler2RGB or from _no_grain_color
Point RGB;
if (grain_id < 0) //If not in a grain, return _no_grain_color
RGB = _no_grain_color;
else
RGB = euler2RGB(_sd, angles(0) / 180.0 * libMesh::pi, angles(1) / 180.0 * libMesh::pi, angles(2) / 180.0 * libMesh::pi, 1.0, _xtal_class);
// Create correct scalar output
if (_output_type < 3)
_value = RGB(_output_type);
else if (_output_type == 3)
{
Real RGBint = 0.0;
for (unsigned int i = 0; i < 3; ++i)
RGBint = 256 * RGBint + (RGB(i) >= 1 ? 255 : std::floor(RGB(i) * 256.0));
_value = RGBint;
}
else
mooseError("Incorrect value for output_type in EulerAngleProvider2RGBAux");
}
Real
NodalFloodCountAux::computeValue()
{
switch (_field_display)
{
case 0: // UNIQUE_REGION
case 1: // VARIABLE_COLORING
return _flood_counter.getNodalValue(_current_node->id(), _var_idx, _var_coloring);
case 2: // ACTIVE_BOUNDS
if (isNodal())
return _flood_counter.getNodalValues(_current_node->id()).size();
else
{
size_t size=0;
std::vector<std::vector<std::pair<unsigned int, unsigned int> > > values = _flood_counter.getElementalValues(_current_elem->id());
for (unsigned int i = 0; i < values.size(); ++i)
size += values[i].size();
return size;
}
case 3: // CENTROID
return _flood_counter.getElementalValue(_current_elem->id());
}
return 0;
}
void
FeatureFloodCountAux::precalculateValue()
{
switch (_field_display)
{
case 0: // UNIQUE_REGION
case 1: // VARIABLE_COLORING
case 2: // GHOSTED_ENTITIES
case 3: // HALOS
case 4: // CENTROID
_value = _flood_counter.getEntityValue((isNodal() ? _current_node->id() : _current_elem->id()), _field_type, _var_idx);
break;
case 5: // ACTIVE_BOUNDS
if (_grain_tracker_ptr)
{
const auto & op_to_grains = _grain_tracker_ptr->getOpToGrainsVector(_current_elem->id());
_value = std::count_if(op_to_grains.begin(), op_to_grains.end(),
[](unsigned int grain_id)
{
return grain_id != libMesh::invalid_uint;
});
}
else
_value = 0;
break;
default:
mooseError("Unimplemented \"field_display\" type");
}
}
Real
NewmarkVelAux::computeValue()
{
Real vel_old = _u_old[_qp];
if (!isNodal())
mooseError("must run on a nodal variable");
return vel_old + (_dt*(1-_gamma))*_accel_old[_qp] + _gamma*_dt*_accel[_qp];
}
Real
ProcessorIDAux::computeValue()
{
if (isNodal())
return _current_node->processor_id();
else
return _current_elem->processor_id();
}
Real
AccumulateAux::computeValue()
{
if (isNodal())
return _var.nodalSln()[_qp] + _accumulate_from[_qp];
else
return _var.nodalSln()[0] + _accumulate_from[_qp];
}
Real
Position::computeValue()
{
if (isNodal())
return (*_current_node)(0) / _r_units;
else
return _q_point[_qp](0) / _r_units;
}
Real
FunctionAux::computeValue()
{
if (isNodal())
return _func.value(_t, *_current_node);
else
return _func.value(_t, _q_point[_qp]);
}
Real
FunctionOfVariableAux::computeValue()
{
Real t_val = _t_variable[_qp];
if (isNodal())
return _func.value(t_val, *_current_node);
else
return _func.value(t_val, _current_elem->centroid());
}
Real
NewmarkVelAux::computeValue()
{
Real vel_old = _u_old[_qp];
if (!isNodal())
mooseError("must run on a nodal variable");
// Calculates Velocity using Newmark time integration scheme
return vel_old + (_dt * (1 - _gamma)) * _accel_old[_qp] + _gamma * _dt * _accel[_qp];
}
Real
TestNewmarkTI::computeValue()
{
if (!isNodal())
mooseError("must run on a nodal variable");
// assigns the first/second time derivative of displacement to the provided auxvariable
return _value[_qp];
}
Real
FissionRateAux::computeValue()
{
//Aux to calcu the fission rate.Axial and radical power function are defined as function1 and 2.
if (isNodal())
return _Function1->value(_t,*_current_node)*_Function2->value(_t,*_current_node)/_energy_per_fission;
else
return _Function1->value(_t,_q_point[_qp])*_Function2->value(_t,_q_point[_qp])/_energy_per_fission;
}
VectorVariableComponentAux::VectorVariableComponentAux(const InputParameters & parameters)
: AuxKernel(parameters),
_vector_variable_value(coupledNodalValue<RealVectorValue>("vector_variable")),
_component(getParam<MooseEnum>("component"))
{
if (!isNodal())
mooseError(
"VectorVariableComponentAux is meant to be used with LAGRANGE_VEC variables and so the "
"auxiliary variable should be nodal");
}
void
AuxKernel::compute()
{
precalculateValue();
if (isNodal()) /* nodal variables */
{
if (_var.isNodalDefined())
{
_qp = 0;
Real value = computeValue();
// update variable data, which is referenced by other kernels, so the value is up-to-date
_var.setNodalValue(value);
}
}
else /* elemental variables */
{
_n_local_dofs = _var.numberOfDofs();
if (_n_local_dofs == 1) /* p0 */
{
Real value = 0;
for (_qp = 0; _qp < _qrule->n_points(); _qp++)
value += _JxW[_qp] * _coord[_qp] * computeValue();
value /= (_bnd ? _current_side_volume : _current_elem_volume);
// update the variable data refernced by other kernels.
// Note that this will update the values at the quadrature points too
// (because this is an Elemental variable)
_var.setNodalValue(value);
}
else /* high-order */
{
_local_re.resize(_n_local_dofs);
_local_re.zero();
_local_ke.resize(_n_local_dofs, _n_local_dofs);
_local_ke.zero();
// assemble the local mass matrix and the load
for (unsigned int i = 0; i < _test.size(); i++)
for (_qp = 0; _qp < _qrule->n_points(); _qp++)
{
Real t = _JxW[_qp] * _coord[_qp] * _test[i][_qp];
_local_re(i) += t * computeValue();
for (unsigned int j = 0; j < _test.size(); j++)
_local_ke(i, j) += t * _test[j][_qp];
}
// mass matrix is always SPD
_local_sol.resize(_n_local_dofs);
_local_ke.cholesky_solve(_local_re, _local_sol);
_var.setNodalValue(_local_sol);
}
}
}
Real
NewmarkAccelAux::computeValue()
{
if (!isNodal())
mooseError("must run on a nodal variable");
Real accel_old = _u_old[_qp];
if (_dt == 0)
return accel_old;
return 1/_beta*(((_disp[_qp]-_disp_old[_qp])/(_dt*_dt)) - _vel_old[_qp]/_dt - accel_old*(0.5-_beta));
}
MultipleUpdateElemAux::MultipleUpdateElemAux(const InputParameters & parameters) :
AuxKernel(parameters),
_n_vars(coupledComponents("vars"))
{
for (unsigned int i=0; i<_n_vars; i++)
{
_vars.push_back(getVar("vars", i));
if (_vars[i]->isNodal()) mooseError("variables have to be elemental");
}
if (isNodal()) mooseError("variable have to be elemental");
}
void
MooseVariable::computeIncrementAtNode(const NumericVector<Number> & increment_vec)
{
if (!isNodal())
mooseError("computeIncrementAtNode can only be called for nodal variables");
_increment.resize(1);
// Compute the increment for the current DOF
_increment[0] = increment_vec(_dof_indices[0]);
}
void
MooseVariable::setNodalValueNeighbor(Number value)
{
_nodal_u_neighbor[0] = value; // update variable nodal value
_has_nodal_value_neighbor = true;
if (!isNodal()) // If this is an elemental variable, then update the qp values as well
{
for (unsigned int qp=0; qp<_u_neighbor.size(); qp++)
_u_neighbor[qp] = value;
}
}
Real
OutputEulerAngles::computeValue()
{
// ID of unique grain at current point
const unsigned int grain_id = _grain_tracker.getEntityValue((isNodal() ? _current_node->id() : _current_elem->id()), 0, false);
// Recover euler angles for current grain
const RealVectorValue angles = _euler.getEulerAngles(grain_id);
// Return specific euler angle
return angles(_output_euler_angle);
}
Real
AxialBurnupAux::computeValue()
{
Real Pi=3.14159265;
Real temp=(_Density*_Fuel_Percentage*238/270.0)*Pi*pow(_Pellet_Diameter,2)/4.0;
//Aux to calcu the fission rate.Axial and radical power function are defined as function1 and 2.
if (isNodal())
return _AxialPowerDis->value(_t,*_current_node)*_dt/temp;
else
return (_AxialPowerDis->value(_t,_q_point[_qp])+_AxialPowerDis->value(_t+_dt,_q_point[_qp]))/2*_dt/temp*1.0e-6+_u_old[_qp];//error NOT *_q_point[_qp]
//Average burnup can be cal by post..
}
void
MooseVariable::setNodalValue(Number value, unsigned int idx/* = 0*/)
{
_nodal_u[idx] = value; // update variable nodal value
_has_nodal_value = true;
if (!isNodal()) // If this is an elemental variable, then update the qp values as well
{
for (unsigned int qp=0; qp<_u.size(); qp++)
_u[qp] = value;
}
}
const VariableValue &
MooseVariable::nodalValuePreviousNL()
{
if (isNodal())
{
_need_nodal_u_previous_nl = true;
return _nodal_u_previous_nl;
}
else
mooseError("Nodal values can be requested only on nodal variables, variable '",
name(),
"' is not nodal.");
}
const VariableValue &
MooseVariable::nodalValueDotNeighbor()
{
if (isNodal())
{
_need_nodal_u_dot_neighbor = true;
return _nodal_u_dot_neighbor;
}
else
mooseError("Nodal values can be requested only on nodal variables, variable '",
name(),
"' is not nodal.");
}
FeatureFloodCountAux::FeatureFloodCountAux(const InputParameters & parameters) :
AuxKernel(parameters),
_flood_counter(getUserObject<FeatureFloodCount>("flood_counter")),
_grain_tracker_ptr(dynamic_cast<const GrainTrackerInterface *>(&_flood_counter)),
_var_idx(isParamValid("map_index") ? getParam<unsigned int>("map_index") : std::numeric_limits<unsigned int>::max()),
_field_display(getParam<MooseEnum>("field_display")),
_var_coloring(_field_display == "VARIABLE_COLORING"),
_field_type(_field_display.getEnum<FeatureFloodCount::FieldType>())
{
if (_flood_counter.isElemental() == isNodal() &&
(_field_display == "UNIQUE_REGION" || _field_display == "VARIABLE_COLORING" || _field_display == "GHOSTED_ENTITIES" || _field_display == "HALOS"))
mooseError("UNIQUE_REGION, VARIABLE_COLORING, GHOSTED_ENTITIES and HALOS must be on variable types that match the entity mode of the FeatureFloodCounter");
if (isNodal())
{
if (_field_display == "ACTIVE_BOUNDS")
mooseError("ACTIVE_BOUNDS is only available for elemental aux variables");
if (_field_display == "CENTROID")
mooseError("CENTROID is only available for elemental aux variables");
}
}
/**
* Auxiliary Kernels override computeValue() instead of computeQpResidual(). Aux Variables
* are calculated either one per elemenet or one per node depending on whether we declare
* them as "Elemental (Constant Monomial)" or "Nodal (First Lagrange)". No changes to the
* source are necessary to switch from one type or the other.
*/
Real
CoolantChannelAux::computeValue()
{
//integral power distribution function value
std::vector<Real> axial_height(_axial_layeredvalue+1);
std::vector<Real> function_value(_axial_layeredvalue);
std::vector<Real> integral_value(_axial_layeredvalue+1);
Point p1;
p1(0)=0.0;
p1(1)=0.0;
p1(2)=0.0;
/*
0----1----2----3 axial_height
0----1---2 function_value
*/
axial_height[0] = 0.0;
integral_value[0] = 0.0;
axial_height[_axial_layeredvalue] = _total_pellet_height;
double step=_total_pellet_height/_axial_layeredvalue;
p1(2)=0.5*step;
function_value[0]=_Axial_Power_Dis.value(_t,p1);
p1(2)=0.0;
function_value[0]=_Axial_Power_Dis.value(_t,p1);
//
for(unsigned int i=1;i<=_axial_layeredvalue-1;++i)
{
axial_height[i]=axial_height[i-1]+step;
p1(2)=p1(2)+step;
function_value[i]=_Axial_Power_Dis.value(_t,p1);
integral_value[i] = integral_value[i-1]+function_value[i-1]*step;
}
integral_value[_axial_layeredvalue]=integral_value[_axial_layeredvalue-1]+function_value[_axial_layeredvalue-1]*step;
_coolant_temp.setData(axial_height,integral_value);
if (isNodal())
mooseError("error!NOT nodal,should be monomial and constant ");
else
if(_dimension=="2D")
//2D default axial direction is Y.
return _coolant_temp.sample(_q_point[_qp](1))/_coef/_coolant_heatcapacity[_qp]/_coolant_density[_qp]+_inlet_temp;
else
//3D default axial direction is Z.
return _coolant_temp.sample(_q_point[_qp](2))/_coef/_coolant_heatcapacity[_qp]/_coolant_density[_qp]+_inlet_temp;
}
Real
EBSDReaderAvgDataAux::computeValue()
{
// get the dominant grain for the current element/node
const int grain_id = _grain_tracker.getEntityValue(isNodal() ? _current_node->id() : _current_elem->id(),
FeatureFloodCount::FieldType::UNIQUE_REGION, 0);
// no grain found
if (grain_id < 0)
return _invalid;
// get the data for the grain
return (*_val)(_ebsd_reader.getAvgData(grain_id));
}
XFEMCutPlaneAux::XFEMCutPlaneAux(const InputParameters & parameters) :
AuxKernel(parameters),
_quantity(Xfem::XFEM_CUTPLANE_QUANTITY(int(getParam<MooseEnum>("quantity")))),
_plane_id(getParam<unsigned int>("plane_id"))
{
FEProblem * fe_problem = dynamic_cast<FEProblem *>(&_subproblem);
if (fe_problem == NULL)
mooseError("Problem casting _subproblem to FEProblem in XFEMCutPlaneAux");
_xfem = MooseSharedNamespace::dynamic_pointer_cast<XFEM>(fe_problem->getXFEM());
if (_xfem == NULL)
mooseError("Problem casting to XFEM in XFEMCutPlaneAux");
if (isNodal())
mooseError("XFEMCutPlaneAux can only be run on an element variable");
}
Real
NewmarkAccelAux::computeValue()
{
if (!isNodal())
mooseError("must run on a nodal variable");
Real accel_old = _u_old[_qp];
if (_dt == 0)
return accel_old;
// Calculates acceeleration using Newmark time integration method
return 1.0 / _beta * ((_disp[_qp] - _disp_old[_qp]) / (_dt * _dt) - _vel_old[_qp] / _dt -
accel_old * (0.5 - _beta));
}