struct lfs *lfsLoadAll(char *fileName)
/* Load all lfs from a tab-separated file.
* Dispose of this with lfsFreeList(). */
{
struct lfs *list = NULL, *el;
struct lineFile *lf = lineFileOpen(fileName, TRUE);
char *row[11];
while (lineFileRow(lf, row))
{
el = lfsLoad(row);
slAddHead(&list, el);
}
lineFileClose(&lf);
slReverse(&list);
return list;
}
struct bed *convertLfsToBed (struct lineFile *lf)
/* Read in lfs file contents. Convert to bed struct and store as a list */
{
struct lfs *el = NULL;
char *row[11];
struct bed *lfBedList = NULL;
char *chrom, *name;
unsigned int chromStart, chromEnd;
int i;
while (lineFileRow(lf, row))
{
el = lfsLoad(row);
if (el != NULL)
/* add each linked feature to list */
lfBedList = addLfToList(el, lfBedList);
}
if (lfBedList == NULL)
errAbort("Bed list is null.\n");
return lfBedList;
}
